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Platform GPL5175 Query DataSets for GPL5175
Status Public on May 21, 2007
Title [HuEx-1_0-st] Affymetrix Human Exon 1.0 ST Array [transcript (gene) version]
Technology type in situ oligonucleotide
Distribution commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol See manufacturer's web site

 
Description Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

June 03, 2009: annotation table updated with netaffx build 28
Oct 11, 2012: annotation table updated with netaffx build 32
 
Web link http://www.affymetrix.com/support/technical/byproduct.affx?product=huexon-st
http://www.affymetrix.com/analysis/index.affx
Submission date May 18, 2007
Last update date Feb 18, 2019
Organization Affymetrix, Inc.
E-mail geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (15528) GSM188687, GSM188688, GSM188689, GSM188690, GSM188691, GSM188692 
Series (407)
GSE7760 Exon Level Expression Profiling: a Novel Unbiased Transcriptome Analysis for Body Fluids
GSE7761 Identification of Genetic Variants Contributing to Cisplatin-Induced Cytotoxicity using a Genome-wide Approach
GSE7792 A genome-wide approach to identify genetic variants that contribute to etoposide-induced cytotoxicity
Relations
Alternative to GPL6609
Alternative to GPL7153
Alternative to GPL8238
Affiliated with GPL5188
Alternative to GPL9793
Alternative to GPL10200 (Alternative CDF [Brainarray v11.0.1, ENTREZG])
Alternative to GPL10264 (Alternative CDF)
Alternative to GPL10588 (Alternative CDF [HuEx10stv2_Hs_VEGAG_v10])
Alternative to GPL10647 (Alternative CDF [HsEx10stv2_Hs_ENTREZG])
Alternative to GPL13454 (Alternative CDF [huex10stv2_58_37c_0112.cdf])
Alternative to GPL8476 (Alternative CDF [huex10stv2_52_36n_0110-bin.cdf])
Alternative to GPL15236 (Alternative CDF)
Alternative to GPL15974 (Alternative CDF [CDF: Brainarray Version 9.0.1, HsEx10stv2_Hs_REFSEQ])
Alternative to GPL15981 (Alternative CDF)
Alternative to GPL15997 (GENCODEv10)
Alternative to GPL16163
Alternative to GPL16209 (Alternative CDF [HuEx_1_0_st_v2_core_na31_hg19_HB20110919_noSNPs])
Alternative to GPL16240 (Alternative CDF)
Alternative to GPL16329 (Alternative CDF)
Alternative to GPL17120
Alternative to GPL17279 (Alternative CDF)
Alternative to GPL17426 (Alternative CDF [huex10stv2_67_020.cdf])
Alternative to GPL17629
Alternative to GPL18627 (Alternative CDF)
Alternative to GPL18761 (Alternative CDF [HuEx_1_0_st_v2_na29.hg18.RefSeq-core])
Alternative to GPL19420 (Alternative CDF)
Alternative to GPL19859 (Alternative CDF [Brainarray Version 16.1.0, HsEx10stv2_Hs_REFSEQ])
Alternative to GPL20149 (Alternative CDF [GATExplorer: HuexonSpecificGeneProbes])
Alternative to GPL20843 (alternative)
Alternative to GPL20982 (Alternative CDF [Brainarray v16.0.0, HuEx10stv2_Hs_ENTREZG])
Alternative to GPL21472
Alternative to GPL22891 (Alternative CDF)
Alternative to GPL22995 (Alternative CDF)
Alternative to GPL25685 (Alternative CDF [Brainarray v19.0.0, huex10st_Hs_ENTREZG])
Alternative to GPL25734 ((Alternative CDF [Brainarray v18.0.0, huex10st_Hs_ENTREZG]))

Data table header descriptions
ID Unique identifier for the transcript cluster
GB_LIST GenBank and RefSeq Accessions from mrna_assignment column
SPOT_ID genomic location of the transcript cluster in the version of the genome assembly used at annotation time. Coordinates are standard 1-based (length=stop-start+1).
seqname chromosome number
RANGE_GB NCBI RefSeq for chromosome of current build
RANGE_STRAND strand (+|-)
RANGE_START start (integer). Coordinates are standard 1-based (length=stop-start+1).
RANGE_STOP stop (integer). Coordinates are standard 1-based (length=stop-start+1).
total_probes Total number of probes contained by this transcript cluster
gene_assignment Gene information for each assigned mRNA for mRNAs that corresponds to known genes
mrna_assignment Description of the public mRNAs that should be detected by the sets within this transcript cluster based on sequence alignment
category Array design category of the transcript cluster

Data table
ID GB_LIST SPOT_ID seqname RANGE_GB RANGE_STRAND RANGE_START RANGE_STOP total_probes gene_assignment mrna_assignment category
2315100 NR_024005, NR_034090, NR_024004, AK093685 chr1:11884-14409 chr1 NC_000001.10 + 11884 14409 20 NR_024005 // DDX11L2 // DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 like 2 // 2q13 // 84771 /// NR_034090 // DDX11L9 // DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 like 9 // 15q26.3 // 100288486 /// NR_024004 // DDX11L2 // DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 like 2 // 2q13 // 84771 /// AK093685 // DDX11L2 // DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 like 2 // 2q13 // 84771 NR_024005 // RefSeq // Homo sapiens DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 like 2 (DDX11L2), transcript variant 2, non-coding RNA. // chr1 // 100 // 80 // 16 // 16 // 0 /// NR_034090 // RefSeq // Homo sapiens DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 like 9 (DDX11L9), non-coding RNA. // chr1 // 100 // 80 // 16 // 16 // 0 /// NR_024004 // RefSeq // Homo sapiens DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 like 2 (DDX11L2), transcript variant 1, non-coding RNA. // chr1 // 100 // 75 // 15 // 15 // 0 /// AK093685 // GenBank // Homo sapiens cDNA FLJ36366 fis, clone THYMU2007824. // chr1 // 94 // 80 // 15 // 16 // 0 /// ENST00000513886 // ENSEMBL // cdna:known chromosome:GRCh37:16:61555:64090:1 gene:ENSG00000233614 // chr1 // 100 // 80 // 16 // 16 // 0 /// ENST00000456328 // ENSEMBL // cdna:known chromosome:GRCh37:1:11869:14409:1 gene:ENSG00000223972 // chr1 // 100 // 80 // 16 // 16 // 0 /// ENST00000518655 // ENSEMBL // cdna:known chromosome:GRCh37:1:11869:14409:1 gene:ENSG00000253101 // chr1 // 100 // 80 // 16 // 16 // 0 main
2315106 DQ786314 chr1:14760-15198 chr1 NC_000001.10 + 14760 15198 8 --- DQ786314 // GenBank // Homo sapiens clone HLS_IMAGE_811138 mRNA sequence. // chr1 // 100 // 38 // 3 // 3 // 0 main
2315109 chr1:19408-19712 chr1 NC_000001.10 + 19408 19712 4 --- --- ---
2315111 chr1:25142-25532 chr1 NC_000001.10 + 25142 25532 4 --- --- ---
2315113 DQ786265 chr1:27563-27813 chr1 NC_000001.10 + 27563 27813 4 --- DQ786265 // GenBank // Homo sapiens clone HLS_IMAGE_298685 mRNA sequence. // chr1 // 100 // 100 // 4 // 4 // 0 main
2315115 chr1:28425-29158 chr1 NC_000001.10 + 28425 29158 4 --- ENST00000422679 // ENSEMBL // cdna:novel chromosome:GRCh37:9:27657:30891:1 gene:ENSG00000227518 // chr1 // 100 // 100 // 4 // 4 // 0 main
2315117 chr1:30623-30667 chr1 NC_000001.10 + 30623 30667 4 --- ENST00000473358 // ENSEMBL // cdna:known chromosome:GRCh37:1:29554:31097:1 gene:ENSG00000243485 // chr1 // 100 // 100 // 4 // 4 // 0 main
2315119 chr1:35690-35804 chr1 NC_000001.10 + 35690 35804 4 --- GENSCAN00000013301 // ENSEMBL // cdna:Genscan chromosome:GRCh37:15:102408834:102495479:-1 // chr1 // 100 // 100 // 4 // 4 // 0 /// GENSCAN00000022600 // ENSEMBL // cdna:Genscan chromosome:GRCh37:19:77299:145682:1 // chr1 // 100 // 100 // 4 // 4 // 0 main
2315121 chr1:35928-35968 chr1 NC_000001.10 + 35928 35968 2 --- --- ---
2315123 chr1:37658-37714 chr1 NC_000001.10 + 37658 37714 4 --- --- ---
2315125 NM_001005240, NM_001004195, NM_001005484, BC136848, BC136907 chr1:51913-70633 chr1 NC_000001.10 + 51913 70633 26 NM_001005240 // OR4F17 // olfactory receptor, family 4, subfamily F, member 17 // 19p13.3 // 81099 /// NM_001004195 // OR4F4 // olfactory receptor, family 4, subfamily F, member 4 // 15q26.3 // 26682 /// NM_001005484 // OR4F5 // olfactory receptor, family 4, subfamily F, member 5 // 1p36.33 // 79501 /// ENST00000318050 // OR4F17 // olfactory receptor, family 4, subfamily F, member 17 // 19p13.3 // 81099 /// ENST00000335137 // OR4F4 // olfactory receptor, family 4, subfamily F, member 4 // 15q26.3 // 26682 /// ENST00000326183 // OR4F5 // olfactory receptor, family 4, subfamily F, member 5 // 1p36.33 // 79501 /// BC136848 // OR4F17 // olfactory receptor, family 4, subfamily F, member 17 // 19p13.3 // 81099 /// BC136907 // OR4F4 // olfactory receptor, family 4, subfamily F, member 4 // 15q26.3 // 26682 /// ENST00000442916 // OR4F17 // olfactory receptor, family 4, subfamily F, member 17 // 19p13.3 // 81099 NM_001005240 // RefSeq // Homo sapiens olfactory receptor, family 4, subfamily F, member 17 (OR4F17), mRNA. // chr1 // 100 // 58 // 15 // 15 // 0 /// NM_001004195 // RefSeq // Homo sapiens olfactory receptor, family 4, subfamily F, member 4 (OR4F4), mRNA. // chr1 // 100 // 58 // 15 // 15 // 0 /// NM_001005484 // RefSeq // Homo sapiens olfactory receptor, family 4, subfamily F, member 5 (OR4F5), mRNA. // chr1 // 100 // 58 // 15 // 15 // 0 /// ENST00000318050 // ENSEMBL // Olfactory receptor 4F17 gene:ENSG00000176695 // chr1 // 100 // 58 // 15 // 15 // 0 /// ENST00000335137 // ENSEMBL // Olfactory receptor 4F4 gene:ENSG00000186092 // chr1 // 100 // 58 // 15 // 15 // 0 /// ENST00000326183 // ENSEMBL // Olfactory receptor 4F5 gene:ENSG00000177693 // chr1 // 100 // 58 // 15 // 15 // 0 /// BC136848 // GenBank // Homo sapiens olfactory receptor, family 4, subfamily F, member 17, mRNA (cDNA clone MGC:168462 IMAGE:9020839), complete cds. // chr1 // 100 // 58 // 15 // 15 // 0 /// BC136907 // GenBank // Homo sapiens olfactory receptor, family 4, subfamily F, member 4, mRNA (cDNA clone MGC:168521 IMAGE:9020898), complete cds. // chr1 // 100 // 58 // 15 // 15 // 0 /// ENST00000442916 // ENSEMBL // OR4F4 (Fragment) gene:ENSG00000176695 // chr1 // 100 // 46 // 12 // 12 // 0 main
2315129 chr1:52452-63887 chr1 NC_000001.10 + 52452 63887 20 --- ENST00000492842 // ENSEMBL // cdna:pseudogene chromosome:GRCh37:1:62948:63887:1 gene:ENSG00000240361 // chr1 // 100 // 40 // 8 // 8 // 0 main
2315135 chr1:53298-53939 chr1 NC_000001.10 + 53298 53939 4 --- --- ---
2315145 BC028185 chr1:115060-116054 chr1 NC_000001.10 + 115060 116054 4 --- BC028185 // GenBank // Homo sapiens cDNA clone IMAGE:4422069, partial cds. // chr1 // 100 // 100 // 4 // 4 // 0 main
2315147 XM_002343043, XM_002344123, XM_003119218 chr1:131158-146731 chr1 NC_000001.10 + 131158 146731 44 XM_002343043 // LOC100288692 // protein capicua homolog // 11p15.5 // 100288692 /// XM_002344123 // LOC100289383 // protein capicua homolog // 16q24.3 // 100289383 /// XM_003119218 // LOC100506283 // protein capicua homolog // --- // 100506283 ENST00000442987 // ENSEMBL // cdna:pseudogene chromosome:GRCh37:1:131104:133923:1 gene:ENSG00000233750 // chr1 // 100 // 66 // 29 // 29 // 0 /// ENST00000432723 // ENSEMBL // cdna:pseudogene chromosome:GRCh37:1:329426:332243:-1 gene:ENSG00000233653 // chr1 // 96 // 57 // 24 // 25 // 0 /// ENST00000457191 // ENSEMBL // cdna:pseudogene chromosome:GRCh37:3:197950368:197953181:-1 gene:ENSG00000230304 // chr1 // 96 // 57 // 24 // 25 // 0 /// ENST00000507432 // ENSEMBL // cdna:pseudogene chromosome:GRCh37:5:180756044:180758857:-1 gene:ENSG00000251564 // chr1 // 96 // 55 // 23 // 24 // 0 /// ENST00000440782 // ENSEMBL // cdna:pseudogene chromosome:GRCh37:1:657465:660287:1 gene:ENSG00000229376 // chr1 // 94 // 39 // 16 // 17 // 0 /// ENST00000447359 // ENSEMBL // cdna:pseudogene chromosome:GRCh37:20:62921540:62924351:-1 gene:ENSG00000232852 // chr1 // 77 // 30 // 10 // 13 // 0 /// ENST00000406017 // ENSEMBL // cdna:pseudogene chromosome:GRCh37:6:142705:145059:1 gene:ENSG00000217929 // chr1 // 78 // 20 // 7 // 9 // 0 /// ENST00000422015 // ENSEMBL // cdna:pseudogene chromosome:GRCh37:1:222641436:222644224:1 gene:ENSG00000234419 // chr1 // 80 // 11 // 4 // 5 // 0 /// ENST00000424045 // ENSEMBL // cdna:pseudogene chromosome:GRCh37:1:224135302:224138118:1 gene:ENSG00000233771 // chr1 // 75 // 9 // 3 // 4 // 0 /// XM_002343043 // RefSeq // PREDICTED: Homo sapiens protein capicua homolog (LOC100288692), mRNA. // chr1 // 86 // 64 // 24 // 28 // 0 /// XM_002344123 // RefSeq // PREDICTED: Homo sapiens protein capicua homolog (LOC100289383), mRNA. // chr1 // 86 // 64 // 24 // 28 // 0 /// XM_003119218 // RefSeq // PREDICTED: Homo sapiens protein capicua homolog (LOC100506283), partial mRNA. // chr1 // 83 // 27 // 10 // 12 // 0 /// GENSCAN00000028516 // ENSEMBL // cdna:Genscan chromosome:GRCh37:1:131158:134833:1 // chr1 // 100 // 64 // 28 // 28 // 0 /// GENSCAN00000028508 // ENSEMBL // cdna:Genscan chromosome:GRCh37:1:328521:332192:-1 // chr1 // 100 // 55 // 24 // 24 // 0 /// GENSCAN00000002268 // ENSEMBL // cdna:Genscan chromosome:GRCh37:5:180755136:180758807:-1 // chr1 // 100 // 55 // 24 // 24 // 0 /// GENSCAN00000022630 // ENSEMBL // cdna:Genscan chromosome:GRCh37:19:174495:196965:1 // chr1 // 100 // 45 // 20 // 20 // 0 /// GENSCAN00000033582 // ENSEMBL // cdna:Genscan chromosome:GRCh37:3:197949450:197953165:-1 // chr1 // 100 // 45 // 20 // 20 // 0 /// GENSCAN00000004696 // ENSEMBL // cdna:Genscan chromosome:GRCh37:11:123362:127047:1 // chr1 // 79 // 55 // 19 // 24 // 0 /// GENSCAN00000026817 // ENSEMBL // cdna:Genscan chromosome:GRCh37:16:90238515:90242190:-1 // chr1 // 75 // 45 // 15 // 20 // 0 /// GENSCAN00000017806 // ENSEMBL // cdna:Genscan chromosome:GRCh37:1:243213129:243216785:1 // chr1 // 86 // 32 // 12 // 14 // 0 /// GENSCAN00000028691 // ENSEMBL // cdna:Genscan chromosome:GRCh37:4:119554567:119581819:-1 // chr1 // 60 // 23 // 6 // 10 // 0 main
2315160 AK303004, NR_028324, NR_028326 chr1:136242-136557 chr1 NC_000001.10 + 136242 136557 8 AK303004 // FLJ45445 // hypothetical LOC399844 // 19p13.3 // 399844 /// NR_028324 // FLJ45445 // hypothetical LOC399844 // 19p13.3 // 399844 /// NR_028326 // LOC100133161 // hypothetical LOC100133161 // 11p15.5 // 100133161 AK303004 // GenBank // Homo sapiens cDNA FLJ56364 complete cds. // chr1 // 88 // 100 // 7 // 8 // 0 /// NR_028324 // RefSeq // Homo sapiens hypothetical LOC399844 (FLJ45445), non-coding RNA. // chr1 // 100 // 100 // 8 // 8 // 0 /// NR_028326 // RefSeq // Homo sapiens hypothetical LOC100133161 (LOC100133161), non-coding RNA. // chr1 // 100 // 100 // 8 // 8 // 0 /// ENST00000450789 // ENSEMBL // cdna:known chromosome:GRCh37:19:200112:202173:-1 gene:ENSG00000206082 // chr1 // 88 // 100 // 7 // 8 // 0 main
2315163 AK302511, AK302889, AK294489, BC118988, NR_028326 chr1:138440-662350 chr1 NC_000001.10 + 138440 662350 85 AK302511 // LOC100132062 // hypothetical LOC100132062 // 5q35.3 // 100132062 /// AK302889 // LOC728417 // hypothetical LOC728417 // 1q41 // 728417 /// AK294489 // LOC100133331 // hypothetical LOC100133331 // 1p36.33 // 100133331 /// BC118988 // NCRNA00266 // non-protein coding RNA 266 // --- // 140849 /// NR_028326 // LOC100133161 // hypothetical LOC100133161 // 11p15.5 // 100133161 AK302511 // GenBank // Homo sapiens cDNA FLJ61476 complete cds. // chr1 // 90 // 25 // 19 // 21 // 0 /// AK302889 // GenBank // Homo sapiens cDNA FLJ54896 complete cds. // chr1 // 100 // 14 // 12 // 12 // 0 /// AK294489 // GenBank // Homo sapiens cDNA FLJ52615 complete cds. // chr1 // 50 // 7 // 3 // 6 // 0 /// BC118988 // GenBank // Homo sapiens chromosome 20 open reading frame 69, mRNA (cDNA clone MGC:141807 IMAGE:40035995), complete cds. // chr1 // 100 // 7 // 6 // 6 // 0 /// NR_028326 // RefSeq // Homo sapiens hypothetical LOC100133161 (LOC100133161), non-coding RNA. // chr1 // 93 // 35 // 28 // 30 // 0 /// ENST00000456544 // ENSEMBL // cdna:known chromosome:GRCh37:5:180743344:180752691:1 gene:ENSG00000238035 // chr1 // 96 // 31 // 25 // 26 // 0 /// ENST00000435244 // ENSEMBL // cdna:known chromosome:GRCh37:11:129736:139099:-1 gene:ENSG00000230724 // chr1 // 89 // 21 // 16 // 18 // 0 /// ENST00000425496 // ENSEMBL // cdna:known chromosome:GRCh37:1:324564:328580:1 gene:ENSG00000237094 // chr1 // 100 // 16 // 14 // 14 // 0 /// ENST00000457364 // ENSEMBL // cdna:known chromosome:GRCh37:5:180751179:180755195:1 gene:ENSG00000238035 // chr1 // 93 // 16 // 13 // 14 // 0 /// ENST00000418377 // ENSEMBL // cdna:known chromosome:GRCh37:1:243219131:243221165:-1 gene:ENSG00000214837 // chr1 // 82 // 13 // 9 // 11 // 0 /// ENST00000455464 // ENSEMBL // cdna:known chromosome:GRCh37:1:334140:342806:1 gene:ENSG00000224813 // chr1 // 100 // 9 // 8 // 8 // 0 /// ENST00000428915 // ENSEMBL // cdna:known chromosome:GRCh37:10:38742109:38755311:1 gene:ENSG00000203496 // chr1 // 70 // 12 // 7 // 10 // 0 /// ENST00000423728 // ENSEMBL // cdna:known chromosome:GRCh37:1:320162:324461:1 gene:ENSG00000237094 // chr1 // 100 // 8 // 7 // 7 // 0 /// ENST00000279067 // ENSEMBL // cdna:known chromosome:GRCh37:20:62921738:62934912:1 gene:ENSG00000149656 // chr1 // 100 // 7 // 6 // 6 // 0 /// ENST00000436899 // ENSEMBL // cdna:known chromosome:GRCh37:6:131910:144885:-1 gene:ENSG00000170590 // chr1 // 100 // 7 // 6 // 6 // 0 /// ENST00000307499 // ENSEMBL // cdna:known supercontig::GL000227.1:57780:70752:-1 gene:ENSG00000229450 // chr1 // 100 // 7 // 6 // 6 // 0 /// ENST00000427071 // ENSEMBL // cdna:known chromosome:GRCh37:11:130207:131297:-1 gene:ENSG00000230724 // chr1 // 100 // 5 // 4 // 4 // 0 /// ENST00000424587 // ENSEMBL // cdna:known chromosome:GRCh37:1:235856:267253:-1 gene:ENSG00000228463 // chr1 // 100 // 5 // 4 // 4 // 0 /// ENST00000432557 // ENSEMBL // cdna:known chromosome:GRCh37:8:132324:150572:-1 gene:ENSG00000250210 // chr1 // 100 // 5 // 4 // 4 // 0 /// ENST00000523795 // ENSEMBL // cdna:known chromosome:GRCh37:8:141690:150563:-1 gene:ENSG00000250210 // chr1 // 100 // 5 // 4 // 4 // 0 /// ENST00000471248 // ENSEMBL // cdna:known chromosome:GRCh37:1:110953:129173:-1 gene:ENSG00000238009 // chr1 // 100 // 4 // 3 // 3 // 0 /// ENST00000432964 // ENSEMBL // cdna:known chromosome:GRCh37:1:320162:321056:1 gene:ENSG00000237094 // chr1 // 100 // 4 // 3 // 3 // 0 /// ENST00000456623 // ENSEMBL // cdna:known chromosome:GRCh37:1:324515:326852:1 gene:ENSG00000237094 // chr1 // 100 // 4 // 3 // 3 // 0 /// ENST00000441245 // ENSEMBL // cdna:known chromosome:GRCh37:1:637316:655530:-1 gene:ENSG00000230021 // chr1 // 100 // 4 // 3 // 3 // 0 main
2315189 chr1:140341-140737 chr1 NC_000001.10 + 140341 140737 4 --- --- ---
2315191 XR_110601 chr1:141298-320283 chr1 NC_000001.10 + 141298 320283 15 XR_110601 // LOC100507658 // hypothetical LOC100507658 // --- // 100507658 XR_110601 // RefSeq // PREDICTED: Homo sapiens hypothetical LOC100507658 (LOC100507658), partial miscRNA. // chr1 // 100 // 20 // 3 // 3 // 0 main
2315196 chr1:144735-144892 chr1 NC_000001.10 + 144735 144892 4 --- --- ---

Total number of rows: 316919

Table truncated, full table size 84940 Kbytes.




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