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Platform GPL4933 Query DataSets for GPL4933
Status Public on Mar 18, 2007
Title Nimblegen 1.5M Mouse Condensed Tiling array of mm5 at 100bp resolution v1.0 set 3 of 4
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Nimblegen Systems Inc.
Manufacture protocol Condensed mouse genome tiling arrays and the design principle of this array has been described previously (Kim et al., 2005).
 
Description The 4 condensed scan arrays were based on NCBI33 build of the mouse genome (mm5) and contained a total of 1,495,582 50-mer oligonucleotides. The tiled probes are within the regions bound by Pol2 in brain, heart, kidney, liver or mES from the genomewide scan. There are a total of 4 arrays. This is set 3.
 
Web link http://www.nimblegen.com/
Contributor(s) Li Z, Barrera L, Smith A, Zhang MQ, Green RD, Ren B
Submission date Mar 06, 2007
Last update date May 23, 2007
Contact name Bing Ren
E-mail(s) biren@ucsd.edu
Organization name Ludwig Institute for Cancer Research
Department Department of Cellular and Molecular Medicine
Lab Laboratory of Gene Regulation
Street address 9500 Gilman Drive
City La Jolla
State/province CA
ZIP/Postal code 92093-0653
Country USA
 
Samples (15) GSM175648, GSM175649, GSM175650, GSM175651, GSM175653, GSM175654 
Series (1)
GSE7688 Genome-wide mapping and analysis of active promoters in mouse ES cells and adult organs

Data table header descriptions
ID PROBE_DESIGN_ID
DESIGN_ID PROBE_ID
COORDINATES MM5 chrPposition or control annotation
SEQUENCE SEQUENCE UCSC mm5
GB_RANGE

Data table
ID DESIGN_ID COORDINATES SEQUENCE GB_RANGE
2251_0001_0001 MM5000P08238284 chr10P128615656 TTTAGACCTTGGGGAGAGGAAGAAGGTTTGGGATATAAGGTTTTTCCAGT NC_000076.1[128615656..128615706]
2251_0004_0001 CPK6 FIDUCIAL_UPPER_LEFTP0 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN
2251_0006_0001 CPK6 FIDUCIAL_UPPER_LEFTP0 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN
2251_0008_0001 CPK6 FIDUCIAL_UPPER_LEFTP0 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN
2251_0010_0001 CPK6 FIDUCIAL_UPPER_LEFTP0 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN
2251_0012_0001 CPK6 FIDUCIAL_UPPER_LEFTP0 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN
2251_0014_0001 CPK6 FIDUCIAL_UPPER_LEFTP0 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN
2251_0016_0001 CPK6 FIDUCIAL_UPPER_LEFTP0 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN
2251_0018_0001 CPK6 FIDUCIAL_UPPER_LEFTP0 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN
2251_0020_0001 CPK6 FIDUCIAL_UPPER_LEFTP0 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN
2251_0022_0001 CPK6 FIDUCIAL_UPPER_LEFTP0 TGAGTTGTTTGATAGGATTATTCATAGAGGTCATTACAGCGAGAGGAANNNNNNNNN
2251_0025_0001 MM5000P09404670 chr12P81794012 GTCCCCTTTACGTGAACTTGGCTGGAGAGACAGAACTCCCAGTAATGGGA NC_000078.1[81794012..81794062]
2251_0027_0001 MM5000P07951564 chr10P79885207 GGGGTCCCGCGCCATGAGCTCCACGCAGTTCAACAAGGGCCCGTCCTACG NC_000076.1[79885207..79885257]
2251_0029_0001 MM5000P07030661 chr9P40341340 CGGAATATTTTCTAGAACAACCATACCCCGCTTACTGCCTGCCACTTCAA NC_000075.1[40341340..40341390]
2251_0031_0001 MM5000P06927941 chr9P21989048 AGTTTTTTTTTTTTTCATGAGAAACTTCTAGAAATCCTCCCAACACGAAA NC_000075.1[21989048..21989098]
2251_0033_0001 MM5000P07116344 chr9P53463300 CCTATTTTAAAGGCTTTGTTTTGGTGATAAAGCAATGCTGATCTTGAGTA NC_000075.1[53463300..53463350]
2251_0035_0001 MM5000P10236163 chr13P115802263 GCAGGAGAGCTACGAAGATCATAACCTTGAAAATTTGCTGTTTTTTCATA NC_000079.1[115802263..115802313]
2251_0037_0001 MM5000P10873473 chr14P115215455 TGTGCAGTCATCCTTTACGTCTTCAATTTTAGGCCTTCGCCATCATTTTC NC_000080.1[115215455..115215505]
2251_0039_0001 MM5000P09389944 chr12P79508500 CTGGAGTCATCCGACCACGCAGAAAGGGTGCATTTTTCTGATGCTATGGG NC_000078.1[79508500..79508550]
2251_0041_0001 MM5000P08879686 chr11P109322691 CGCGGGCTCGTCTCCCTCCACCCCTCCGCTCGGTGATTTCAGCCTAGCTC NC_000077.1[109322691..109322741]

Total number of rows: 391015

Table truncated, full table size 48830 Kbytes.




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