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Platform GPL4902 Query DataSets for GPL4902
Status Public on Mar 03, 2007
Title Riken Thermus thermophilus HB8 4K mRNA array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Thermus thermophilus HB8
Manufacturer Affymetrix
Manufacture protocol Affymetrix custom array standard protocol. Please see http://www.affymetrix.com for more information.
 
 
Contributor(s) Nakagawa N, Hatakeyama M, Masui R, Konagaya A, Yokoyama S, Kuramitsu S
Submission date Mar 01, 2007
Last update date Mar 03, 2007
Contact name Akeo Shinkai
E-mail ashinkai@spring8.or.jp
Organization name RIKEN Harima Institute
Street address 1-1-1, Kouto, Sayo
City Hyogo
ZIP/Postal code 679-5148
Country Japan
 
Samples (179) GSM172532, GSM172533, GSM172534, GSM172535, GSM172536, GSM172537 
Series (24)
GSE7165 Time course of the mRNA expression in wild-type Thermus thermophilus HB8 strain grown on a rich medium (labeling:ENZO)
GSE7166 Comparative expression analysis between CRP (TTHA1437) deletion mutant and wild-type of T. thermophilus HB8
GSE7175 SuperSeries for the study of expression analysis of the T. thermophilus CRP (TTHA1437)

Data table header descriptions
ID
GeneChip Array name of the custum GeneChip array
ORGANISM source of gene
Probe_Pairs number of probe
ORF locus tag
Descriptions annotation of ORF
SPOT_ID spot identifier

Data table
ID GeneChip Array ORGANISM Probe_Pairs ORF Descriptions SPOT_ID
AFFX-BioB-5_at TTHB8401a520105F 20 E. coli GEN=bioB DB_XREF=gb:J04423.1 NOTE=SIF corresponding to nucleotides 2032-2305 of gb:J04423.1 DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. E. coli
AFFX-BioB-M_at TTHB8401a520105F 20 E. coli GEN=bioB DB_XREF=gb:J04423.1 NOTE=SIF corresponding to nucleotides 2482-2739 of gb:J04423.1 DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. E. coli
AFFX-BioB-3_at TTHB8401a520105F 20 E. coli GEN=bioB DB_XREF=gb:J04423.1 NOTE=SIF corresponding to nucleotides 2755-3052 of gb:J04423.1 DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. E. coli
AFFX-BioC-5_at TTHB8401a520105F 20 E. coli GEN=bioC DB_XREF=gb:J04423.1 NOTE=SIF corresponding to nucleotides 4218-4566 of gb:J04423.1 DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. E. coli
AFFX-BioC-3_at TTHB8401a520105F 20 E. coli GEN=bioC DB_XREF=gb:J04423.1 NOTE=SIF corresponding to nucleotides 4626-4878 of gb:J04423.1 DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. E. coli
AFFX-BioDn-5_at TTHB8401a520105F 20 E. coli GEN=bioD DB_XREF=gb:J04423.1 NOTE=SIF corresponding to nucleotides 4980-5256 of gb:J04423.1, not 100% identical DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. E. coli
AFFX-BioDn-3_at TTHB8401a520105F 20 E. coli GEN=bioD DB_XREF=gb:J04423.1 NOTE=SIF corresponding to nucleotides 5286-5570 of gb:J04423.1, not 100% identical DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. E. coli
AFFX-CreX-5_at TTHB8401a520105F 20 Bacteriophage P1 GEN=cre DB_XREF=gb:X03453.1 NOTE=SIF corresponding to nucleotides 513-1047 of gb:X03453.1 DEF=Bacteriophage P1 cre gene for recombinase protein. Bacteriophage P1 GEN
AFFX-CreX-3_at TTHB8401a520105F 20 Bacteriophage P1 GEN=cre DB_XREF=gb:X03453.1 NOTE=SIF corresponding to nucleotides 1089-1495 of gb:X03453.1 DEF=Bacteriophage P1 cre gene for recombinase protein. Bacteriophage P1 GEN
AFFX-DapX-5_at TTHB8401a520105F 20 B. subtilis GEN=dapB DB_XREF=gb:L38424.1 NOTE=SIF corresponding to nucleotides 1428-1926 of gb:L38424.1 DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds s. B. subtilis
AFFX-DapX-M_at TTHB8401a520105F 20 B. subtilis GEN=dapB, jojF DB_XREF=gb:L38424.1 NOTE=SIF corresponding to nucleotides 2020-2580 of gb:L38424.1, not 100% identical DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds s. B. subtilis
AFFX-DapX-3_at TTHB8401a520105F 20 B. subtilis GEN=jojG DB_XREF=gb:L38424.1 NOTE=SIF corresponding to nucleotides 2684-3130 of gb:L38424.1 DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds s. B. subtilis
AFFX-LysX-5_at TTHB8401a520105F 20 B. subtilis GEN=lys DB_XREF=gb:X17013.1 NOTE=SIF corresponding to nucleotides 387-658 of gb:X17013.1, not 100% identical DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). B. subtilis
AFFX-LysX-M_at TTHB8401a520105F 20 B. subtilis GEN=lys DB_XREF=gb:X17013.1 NOTE=SIF corresponding to nucleotides 720-990 of gb:X17013.1, not 100% identical DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). B. subtilis
AFFX-LysX-3_at TTHB8401a520105F 20 B. subtilis GEN=lys DB_XREF=gb:X17013.1 NOTE=SIF corresponding to nucleotides 1061-1343 of gb:X17013.1, not 100% identical DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). B. subtilis
AFFX-PheX-5_at TTHB8401a520105F 20 B. subtilis GEN=pheA DB_XREF=gb:M24537.1 NOTE=SIF corresponding to nucleotides 2028-2375 of gb:M24537.1, not 100% identical DEF=Bacillus subtillis sporulation protein (spoOB), GTP-binding protein (obg), phenylalanine biosynthesis associated protein (pheB), and monofunctional prephenate dehydratase (pheA) genes, complete cds. B. subtilis
AFFX-PheX-M_at TTHB8401a520105F 20 B. subtilis GEN=pheA DB_XREF=gb:M24537.1 NOTE=SIF corresponding to nucleotides 2437-2828 of gb:M24537.1 DEF=Bacillus subtillis sporulation protein (spoOB), GTP-binding protein (obg), phenylalanine biosynthesis associated protein (pheB), and monofunctional prephenate dehydratase (pheA) genes, complete cds. B. subtilis
AFFX-PheX-3_at TTHB8401a520105F 20 B. subtilis GEN=pheB DB_XREF=gb:M24537.1 NOTE=SIF corresponding to nucleotides 2885-3326 of gb:M24537.1, not 100% identical DEF=Bacillus subtillis sporulation protein (spoOB), GTP-binding protein (obg), phenylalanine biosynthesis associated protein (pheB), and monofunctional prephenate dehydratase (pheA) genes, complete cds. B. subtilis
AFFX-ThrX-5_at TTHB8401a520105F 20 B. subtilis GEN=thrC DB_XREF=gb:X04603.1 NOTE=SIF corresponding to nucleotides 288-932 of gb:X04603.1 DEF=B. subtilis thrB and thrC genes for homoserine kinase and threonine synthase (EC 2.7.1.39 and EC 4.2.99.2, respectively). B. subtilis
AFFX-ThrX-M_at TTHB8401a520105F 20 B. subtilis GEN=thrC, thrB DB_XREF=gb:X04603.1 NOTE=SIF corresponding to nucleotides 995-1562 of gb:X04603.1, not 100% identical DEF=B. subtilis thrB and thrC genes for homoserine kinase and threonine synthase (EC 2.7.1.39 and EC 4.2.99.2, respectively). B. subtilis

Total number of rows: 3873

Table truncated, full table size 397 Kbytes.






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GPL4902.cdf.gz 3.1 Mb (ftp)(http) CDF

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