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Platform GPL4652 Query DataSets for GPL4652
Status Public on Dec 08, 2006
Title [Medicago] Affymetrix Medicago Genome Array
Technology type in situ oligonucleotide
Distribution commercial
Organisms Sinorhizobium meliloti; Medicago sativa; Medicago truncatula
Manufacturer Affymetrix
Manufacture protocol see manufacturer's web site
 
Description Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

The GeneChip Medicago Genome Array is designed specifically to monitor gene expression in Medicago truncatula, Medicago sativa, and the symbiotic organism Sinorhizobium meliloti. The Medicago Genome Array is particularly useful for agriculture researchers studying legume genomics and symbiotic relationships between nitrogen fixing bacteria and plants.
Sequence information for this array was selected from data sources including the TIGR M. truncatula gene index (The Institute for Genomic Research, January 2005), gene predictions from the International Medicago Genome Annotation Group (IMGAG), gene predictions from the S. meliloti genome, and M. sativa EST information made available by TIGR. The array contains over 61,200 probe sets: 32,167 M. truncatula EST/mRNA-based and chloroplast gene-based probe sets; 18,733 M. truncatula IMGAG and phase 2/3 BAC prediction-based probe sets; 1,896 M. sativa EST/mRNA-based probe sets; and 8,305 S. meliloti gene prediction-based probe sets.
 
Web link http://www.affymetrix.com/products/arrays/specific/medicago.affx
Submission date Dec 08, 2006
Last update date Jun 03, 2009
Organization Affymetrix, Inc.
E-mail geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (668) GSM201195, GSM201196, GSM201197, GSM201198, GSM201199, GSM201200 
Series (54)
GSE8115 A transcript profile of Medicago truncatula root meristem cells
GSE8131 A transcript profile of Medicago truncatula 2HA and Jemmalong during somatic embryogenesis
GSE8138 A transcript profile of Medicago truncatula 2HA tissue culture with auxin treatment

Data table header descriptions
ID Affymetrix Probe Set ID
Species Scientific Name The genus and species of the organism represented by the probe set.
Annotation Date The date that the annotations for this probe array were last updated. It will generally be earlier than the date when the annotations were posted on the Affymetrix web site.
Sequence Type The date that the annotations for this probe array were last updated. It will generally be earlier than the date when the annotations were posted on the Affymetrix web site.
Transcript ID(Array Design)
Target Description
Representative Public ID
UniGene ID
Gene Title Title of Gene represented by the probe set.
SwissProt
Gene Ontology Biological Process
Gene Ontology Cellular Component
Gene Ontology Molecular Function
Protein Families
Protein Domains
InterPro
Annotation Description
Annotation Transcript Cluster
Transcript Assignments
Annotation Notes
GB_ACC GenBank accession number
GI GI number
SPOT_ID

Data table
ID Species Scientific Name Annotation Date Sequence Type Transcript ID(Array Design) Target Description Representative Public ID UniGene ID Gene Title SwissProt Gene Ontology Biological Process Gene Ontology Cellular Component Gene Ontology Molecular Function Protein Families Protein Domains InterPro Annotation Description Annotation Transcript Cluster Transcript Assignments Annotation Notes GB_ACC GI SPOT_ID
AFFX-BioB-3_at Medicago sativa 15-Nov-06 Consensus sequence AFFX-Ec-bioB E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2755-3052 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. AFFX-BioB-3 P12994 /// P12995 /// P12996 /// P12998 /// P12999 /// P13000 9102 // biotin biosynthesis // inferred from electronic annotation /// 8152 // metabolism // inferred from electronic annotation /// 9058 // biosynthesis // inferred from electronic annotation /// 9236 // cobalamin biosynthesis // inferred from electronic annotation 4015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 8483 // transaminase activity // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 30170 // pyridoxal phosphate binding // inferred from electronic annotation /// 3824 // catalytic activity // inferred from electronic annotation /// 4076 // biotin synthase activity // inferred from electronic annotation /// 5506 // iron ion binding // inferred from electronic annotation /// 46872 // metal ion binding // inferred from electronic annotation /// 51536 // iron-sulfur cluster binding // inferred from electronic annotation /// 51537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 51539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation /// 8710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 16769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 8168 // methyltransferase activity // inferred from electronic annotation /// 166 // nucleotide binding // inferred from electronic annotation /// 287 // magnesium ion binding // inferred from electronic annotation /// 4141 // dethiobiotin synthase activity // inferred from electronic annotation /// 5524 // ATP binding // inferred from electronic annotation /// 16874 // ligase activity // inferred from electronic annotation /// 42242 // cobyrinic acid a,c-diamide synthase activity // inferred from electronic annotation This probe set was annotated using the Design Representative Id based pipeline to a GenBank identifier using 4 transcripts. // false // Design Representative Id // R J04423 J04423 // J04423 E coli bioB gene biotin synthetase (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// J04423 // Escherichia coli /REF=J04423 /DEF=E coli bioB gene biotin synthetase corresponding to nucleotides 2393-2682 of J04423 /LEN=1114 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioB gene biotin synthetase (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioB gene biotin synthetase (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioB gene biotin synthetase (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioB gene biotin synthetase (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// AFFX-BioB-3 // E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2755-3052 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. // affx // // /// J04423 // Escherichia coli /REF=J04423 /DEF=E coli bioB gene biotin synthetase /LEN=1114 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// AFFX-BioB-3 // // unknown // // /// AFFX-BioB-3 // // unknown // // /// AFFX-BioB-3 // // unknown // // /// AFFX-BioB-3 // // unknown // // /// AFFX-BioB-3 // // gb // // /// AFFX-BioB-3 // E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2755-3052 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. // affx // // /// J04423 // J04423 E coli bioB gene biotin synthetase (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// // // affx // // /// // // affx // // /// AFFX-BioB-3 // // unknown // // /// AFFX-BioB-3 // // affx // // /// AFFX-BioB-3 // // affx // // /// // // affx // // /// AFFX-BioB-3 // // affx // // /// AFFX-BioB-3 // // affx // // /// AFFX-BioB-3 // // affx // // /// AFFX-BioB-3 // // affx // // /// AFFX-BioB-3 // // affx // // /// AFFX-BioB-3 // // affx // // /// AFFX-BioB-3 // // affx // // /// AFFX-BioB-3 // // affx // // /// AFFX-BioB-3 // // affx // // /// AFFX-BioB-3 // // affx // // /// AFFX-BioB-3 // // affx // // /// AFFX-BioB-3 // // affx // // /// AFFX-BioB-3 // // affx // // /// AFFX-BioB-3 // // affx // // J04423
AFFX-BioB-5_at Medicago sativa 15-Nov-06 Consensus sequence AFFX-Ec-bioB E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2032-2305 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. AFFX-BioB-5 P12994 /// P12995 /// P12996 /// P12998 /// P12999 /// P13000 9102 // biotin biosynthesis // inferred from electronic annotation /// 8152 // metabolism // inferred from electronic annotation /// 9058 // biosynthesis // inferred from electronic annotation /// 9236 // cobalamin biosynthesis // inferred from electronic annotation 4015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 8483 // transaminase activity // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 30170 // pyridoxal phosphate binding // inferred from electronic annotation /// 3824 // catalytic activity // inferred from electronic annotation /// 4076 // biotin synthase activity // inferred from electronic annotation /// 5506 // iron ion binding // inferred from electronic annotation /// 46872 // metal ion binding // inferred from electronic annotation /// 51536 // iron-sulfur cluster binding // inferred from electronic annotation /// 51537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 51539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation /// 8710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 16769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 8168 // methyltransferase activity // inferred from electronic annotation /// 166 // nucleotide binding // inferred from electronic annotation /// 287 // magnesium ion binding // inferred from electronic annotation /// 4141 // dethiobiotin synthase activity // inferred from electronic annotation /// 5524 // ATP binding // inferred from electronic annotation /// 16874 // ligase activity // inferred from electronic annotation /// 42242 // cobyrinic acid a,c-diamide synthase activity // inferred from electronic annotation This probe set was annotated using the Design Representative Id based pipeline to a GenBank identifier using 4 transcripts. // false // Design Representative Id // R J04423 J04423 // J04423 E coli bioB gene biotin synthetase (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// J04423 // Escherichia coli /REF=J04423 /DEF=E coli bioB gene biotin synthetase corresponding to nucleotides 2393-2682 of J04423 /LEN=1114 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioB gene biotin synthetase (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioB gene biotin synthetase (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioB gene biotin synthetase (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioB gene biotin synthetase (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioB gene biotin synthetase (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// AFFX-BioB-5 // E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2032-2305 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. // affx // // /// J04423 // Escherichia coli /REF=J04423 /DEF=E coli bioB gene biotin synthetase /LEN=1114 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// AFFX-BioB-5 // // unknown // // /// AFFX-BioB-5 // // unknown // // /// AFFX-BioB-5 // // unknown // // /// AFFX-BioB-5 // // unknown // // /// AFFX-BioB-5 // // gb // // /// AFFX-BioB-5 // E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2032-2305 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. // affx // // /// J04423 // J04423 E coli bioB gene biotin synthetase (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// // // affx // // /// // // affx // // /// AFFX-BioB-5 // // unknown // // /// AFFX-BioB-5 // // affx // // /// AFFX-BioB-5 // // affx // // /// // // affx // // /// AFFX-BioB-5 // // affx // // /// AFFX-BioB-5 // // affx // // /// AFFX-BioB-5 // // affx // // /// AFFX-BioB-5 // // affx // // /// AFFX-BioB-5 // // affx // // /// AFFX-BioB-5 // // affx // // /// AFFX-BioB-5 // // affx // // /// AFFX-BioB-5 // // affx // // /// AFFX-BioB-5 // // affx // // /// AFFX-BioB-5 // // affx // // /// AFFX-BioB-5 // // affx // // /// AFFX-BioB-5 // // affx // // /// AFFX-BioB-5 // // affx // // /// AFFX-BioB-5 // // affx // // J04423
AFFX-BioB-M_at Medicago sativa 15-Nov-06 Consensus sequence AFFX-Ec-bioB E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2482-2739 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. AFFX-BioB-M P12994 /// P12995 /// P12996 /// P12998 /// P12999 /// P13000 9102 // biotin biosynthesis // inferred from electronic annotation /// 8152 // metabolism // inferred from electronic annotation /// 9058 // biosynthesis // inferred from electronic annotation /// 9236 // cobalamin biosynthesis // inferred from electronic annotation 4015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 8483 // transaminase activity // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 30170 // pyridoxal phosphate binding // inferred from electronic annotation /// 3824 // catalytic activity // inferred from electronic annotation /// 4076 // biotin synthase activity // inferred from electronic annotation /// 5506 // iron ion binding // inferred from electronic annotation /// 46872 // metal ion binding // inferred from electronic annotation /// 51536 // iron-sulfur cluster binding // inferred from electronic annotation /// 51537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 51539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation /// 8710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 16769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 8168 // methyltransferase activity // inferred from electronic annotation /// 166 // nucleotide binding // inferred from electronic annotation /// 287 // magnesium ion binding // inferred from electronic annotation /// 4141 // dethiobiotin synthase activity // inferred from electronic annotation /// 5524 // ATP binding // inferred from electronic annotation /// 16874 // ligase activity // inferred from electronic annotation /// 42242 // cobyrinic acid a,c-diamide synthase activity // inferred from electronic annotation This probe set was annotated using the Design Representative Id based pipeline to a GenBank identifier using 4 transcripts. // false // Design Representative Id // R J04423 J04423 // J04423 E coli bioB gene biotin synthetase (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// J04423 // Escherichia coli /REF=J04423 /DEF=E coli bioB gene biotin synthetase corresponding to nucleotides 2393-2682 of J04423 /LEN=1114 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioB gene biotin synthetase (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioB gene biotin synthetase (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioB gene biotin synthetase (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioB gene biotin synthetase (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// AFFX-BioB-M // E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2482-2739 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. // affx // // /// J04423 // Escherichia coli /REF=J04423 /DEF=E coli bioB gene biotin synthetase /LEN=1114 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// AFFX-BioB-M // // unknown // // /// AFFX-BioB-M // // unknown // // /// AFFX-BioB-M // // unknown // // /// AFFX-BioB-M // // unknown // // /// AFFX-BioB-M // // gb // // /// AFFX-BioB-M // E. coli /GEN=bioB /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 2482-2739 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. // affx // // /// J04423 // J04423 E coli bioB gene biotin synthetase (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// // // affx // // /// // // affx // // /// AFFX-BioB-M // // unknown // // /// AFFX-BioB-M // // affx // // /// AFFX-BioB-M // // affx // // /// // // affx // // /// AFFX-BioB-M // // affx // // /// AFFX-BioB-M // // affx // // /// AFFX-BioB-M // // affx // // /// AFFX-BioB-M // // affx // // /// AFFX-BioB-M // // affx // // /// AFFX-BioB-M // // affx // // /// AFFX-BioB-M // // affx // // /// AFFX-BioB-M // // affx // // /// AFFX-BioB-M // // affx // // /// AFFX-BioB-M // // affx // // /// AFFX-BioB-M // // affx // // /// AFFX-BioB-M // // affx // // /// AFFX-BioB-M // // affx // // /// AFFX-BioB-M // // affx // // J04423
AFFX-BioC-3_at Medicago sativa 15-Nov-06 Consensus sequence AFFX-Ec-bioC E. coli /GEN=bioC /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4626-4878 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. AFFX-BioC-3 P12994 /// P12995 /// P12996 /// P12998 /// P12999 /// P13000 9102 // biotin biosynthesis // inferred from electronic annotation /// 8152 // metabolism // inferred from electronic annotation /// 9058 // biosynthesis // inferred from electronic annotation /// 9236 // cobalamin biosynthesis // inferred from electronic annotation 4015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 8483 // transaminase activity // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 30170 // pyridoxal phosphate binding // inferred from electronic annotation /// 3824 // catalytic activity // inferred from electronic annotation /// 4076 // biotin synthase activity // inferred from electronic annotation /// 5506 // iron ion binding // inferred from electronic annotation /// 46872 // metal ion binding // inferred from electronic annotation /// 51536 // iron-sulfur cluster binding // inferred from electronic annotation /// 51537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 51539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation /// 8710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 16769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 8168 // methyltransferase activity // inferred from electronic annotation /// 166 // nucleotide binding // inferred from electronic annotation /// 287 // magnesium ion binding // inferred from electronic annotation /// 4141 // dethiobiotin synthase activity // inferred from electronic annotation /// 5524 // ATP binding // inferred from electronic annotation /// 16874 // ligase activity // inferred from electronic annotation /// 42242 // cobyrinic acid a,c-diamide synthase activity // inferred from electronic annotation This probe set was annotated using the Design Representative Id based pipeline to a GenBank identifier using 4 transcripts. // false // Design Representative Id // R J04423 J04423 // J04423 E coli bioC protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// J04423 // Escherichia coli /REF=J04423 /DEF=E coli bioC protein corresponding to nucleotides 4609-4883 of J04423 /LEN=777 (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioC protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioC protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioC protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioC protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioC protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// AFFX-BioC-3 // E. coli /GEN=bioC /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4626-4878 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. // affx // // /// J04423 // Escherichia coli /REF=J04423 /DEF=E coli bioC protein /LEN=777 (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// AFFX-BioC-3 // // unknown // // /// AFFX-BioC-3 // // unknown // // /// AFFX-BioC-3 // // unknown // // /// AFFX-BioC-3 // // unknown // // /// AFFX-BioC-3 // // gb // // /// AFFX-BioC-3 // E. coli /GEN=bioC /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4626-4878 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. // affx // // /// J04423 // J04423 E coli bioC protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// // // affx // // /// // // affx // // /// AFFX-BioC-3 // // unknown // // /// AFFX-BioC-3 // // affx // // /// AFFX-BioC-3 // // affx // // /// // // affx // // /// AFFX-BioC-3 // // affx // // /// AFFX-BioC-3 // // affx // // /// AFFX-BioC-3 // // affx // // /// AFFX-BioC-3 // // affx // // /// AFFX-BioC-3 // // affx // // /// AFFX-BioC-3 // // affx // // /// AFFX-BioC-3 // // affx // // /// AFFX-BioC-3 // // affx // // /// AFFX-BioC-3 // // affx // // /// AFFX-BioC-3 // // affx // // /// AFFX-BioC-3 // // affx // // /// AFFX-BioC-3 // // affx // // /// AFFX-BioC-3 // // affx // // /// AFFX-BioC-3 // // affx // // J04423
AFFX-BioC-5_at Medicago sativa 15-Nov-06 Consensus sequence AFFX-Ec-bioC E. coli /GEN=bioC /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4218-4566 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. AFFX-BioC-5 P12994 /// P12995 /// P12996 /// P12998 /// P12999 /// P13000 9102 // biotin biosynthesis // inferred from electronic annotation /// 8152 // metabolism // inferred from electronic annotation /// 9058 // biosynthesis // inferred from electronic annotation /// 9236 // cobalamin biosynthesis // inferred from electronic annotation 4015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 8483 // transaminase activity // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 30170 // pyridoxal phosphate binding // inferred from electronic annotation /// 3824 // catalytic activity // inferred from electronic annotation /// 4076 // biotin synthase activity // inferred from electronic annotation /// 5506 // iron ion binding // inferred from electronic annotation /// 46872 // metal ion binding // inferred from electronic annotation /// 51536 // iron-sulfur cluster binding // inferred from electronic annotation /// 51537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 51539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation /// 8710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 16769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 8168 // methyltransferase activity // inferred from electronic annotation /// 166 // nucleotide binding // inferred from electronic annotation /// 287 // magnesium ion binding // inferred from electronic annotation /// 4141 // dethiobiotin synthase activity // inferred from electronic annotation /// 5524 // ATP binding // inferred from electronic annotation /// 16874 // ligase activity // inferred from electronic annotation /// 42242 // cobyrinic acid a,c-diamide synthase activity // inferred from electronic annotation This probe set was annotated using the Design Representative Id based pipeline to a GenBank identifier using 4 transcripts. // false // Design Representative Id // R J04423 J04423 // J04423 E coli bioC protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// J04423 // Escherichia coli /REF=J04423 /DEF=E coli bioC protein corresponding to nucleotides 4609-4883 of J04423 /LEN=777 (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioC protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioC protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioC protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioC protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// AFFX-BioC-5 // E. coli /GEN=bioC /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4218-4566 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. // affx // // /// J04423 // Escherichia coli /REF=J04423 /DEF=E coli bioC protein /LEN=777 (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// AFFX-BioC-5 // // unknown // // /// AFFX-BioC-5 // // unknown // // /// AFFX-BioC-5 // // unknown // // /// AFFX-BioC-5 // // unknown // // /// AFFX-BioC-5 // // gb // // /// AFFX-BioC-5 // E. coli /GEN=bioC /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4218-4566 of gb:J04423.1 /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. // affx // // /// J04423 // J04423 E coli bioC protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// // // affx // // /// // // affx // // /// AFFX-BioC-5 // // unknown // // /// AFFX-BioC-5 // // affx // // /// AFFX-BioC-5 // // affx // // /// // // affx // // /// AFFX-BioC-5 // // affx // // /// AFFX-BioC-5 // // affx // // /// AFFX-BioC-5 // // affx // // /// AFFX-BioC-5 // // affx // // /// AFFX-BioC-5 // // affx // // /// AFFX-BioC-5 // // affx // // /// AFFX-BioC-5 // // affx // // /// AFFX-BioC-5 // // affx // // /// AFFX-BioC-5 // // affx // // /// AFFX-BioC-5 // // affx // // /// AFFX-BioC-5 // // affx // // /// AFFX-BioC-5 // // affx // // /// AFFX-BioC-5 // // affx // // /// AFFX-BioC-5 // // affx // // J04423
AFFX-BioDn-3_at Medicago sativa 15-Nov-06 Consensus sequence AFFX-Ec-bioD E. coli /GEN=bioD /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 5286-5570 of gb:J04423.1, not 100% identical /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. AFFX-BioDn-3 P12994 /// P12995 /// P12996 /// P12998 /// P12999 /// P13000 9102 // biotin biosynthesis // inferred from electronic annotation /// 8152 // metabolism // inferred from electronic annotation /// 9058 // biosynthesis // inferred from electronic annotation /// 9236 // cobalamin biosynthesis // inferred from electronic annotation 4015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 8483 // transaminase activity // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 30170 // pyridoxal phosphate binding // inferred from electronic annotation /// 3824 // catalytic activity // inferred from electronic annotation /// 4076 // biotin synthase activity // inferred from electronic annotation /// 5506 // iron ion binding // inferred from electronic annotation /// 46872 // metal ion binding // inferred from electronic annotation /// 51536 // iron-sulfur cluster binding // inferred from electronic annotation /// 51537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 51539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation /// 8710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 16769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 8168 // methyltransferase activity // inferred from electronic annotation /// 166 // nucleotide binding // inferred from electronic annotation /// 287 // magnesium ion binding // inferred from electronic annotation /// 4141 // dethiobiotin synthase activity // inferred from electronic annotation /// 5524 // ATP binding // inferred from electronic annotation /// 16874 // ligase activity // inferred from electronic annotation /// 42242 // cobyrinic acid a,c-diamide synthase activity // inferred from electronic annotation This probe set was annotated using the Design Representative Id based pipeline to a GenBank identifier using 4 transcripts. // false // Design Representative Id // R J04423 J04423 // J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// AFFX-BioDn-3 // E. coli /GEN=bioD /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 5286-5570 of gb:J04423.1, not 100% identical /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. // affx // // /// J04423 // Escherichia coli /REF=J04423 /DEF=E coli bioD gene dethiobiotin synthetase /LEN=676 (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// AFFX-BioDn-3 // // unknown // // /// AFFX-BioDn-3 // // unknown // // /// AFFX-BioDn-3 // // unknown // // /// AFFX-BioDn-3 // // unknown // // /// AFFX-BioDn-3 // // gb // // /// AFFX-BioDn-3 // E. coli /GEN=bioD /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 5286-5570 of gb:J04423.1, not 100% identical /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. // affx // // /// J04423 // J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// // // affx // // /// // // affx // // /// AFFX-BioDn-3 // // unknown // // /// AFFX-BioDn-3 // // affx // // /// AFFX-BioDn-3 // // affx // // /// // // affx // // /// AFFX-BioDn-3 // // affx // // /// AFFX-BioDn-3 // // affx // // /// AFFX-BioDn-3 // // affx // // /// AFFX-BioDn-3 // // affx // // /// AFFX-BioDn-3 // // affx // // /// AFFX-BioDn-3 // // affx // // /// AFFX-BioDn-3 // // affx // // /// AFFX-BioDn-3 // // affx // // /// AFFX-BioDn-3 // // affx // // /// AFFX-BioDn-3 // // affx // // /// AFFX-BioDn-3 // // affx // // /// AFFX-BioDn-3 // // affx // // /// AFFX-BioDn-3 // // affx // // /// AFFX-BioDn-3 // // affx // // J04423
AFFX-BioDn-5_at Medicago sativa 15-Nov-06 Consensus sequence AFFX-Ec-bioD E. coli /GEN=bioD /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4980-5256 of gb:J04423.1, not 100% identical /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. AFFX-BioDn-5 P12994 /// P12995 /// P12996 /// P12998 /// P12999 /// P13000 9102 // biotin biosynthesis // inferred from electronic annotation /// 8152 // metabolism // inferred from electronic annotation /// 9058 // biosynthesis // inferred from electronic annotation /// 9236 // cobalamin biosynthesis // inferred from electronic annotation 4015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 8483 // transaminase activity // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 30170 // pyridoxal phosphate binding // inferred from electronic annotation /// 3824 // catalytic activity // inferred from electronic annotation /// 4076 // biotin synthase activity // inferred from electronic annotation /// 5506 // iron ion binding // inferred from electronic annotation /// 46872 // metal ion binding // inferred from electronic annotation /// 51536 // iron-sulfur cluster binding // inferred from electronic annotation /// 51537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 51539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation /// 8710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 16769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 8168 // methyltransferase activity // inferred from electronic annotation /// 166 // nucleotide binding // inferred from electronic annotation /// 287 // magnesium ion binding // inferred from electronic annotation /// 4141 // dethiobiotin synthase activity // inferred from electronic annotation /// 5524 // ATP binding // inferred from electronic annotation /// 16874 // ligase activity // inferred from electronic annotation /// 42242 // cobyrinic acid a,c-diamide synthase activity // inferred from electronic annotation This probe set was annotated using the Design Representative Id based pipeline to a GenBank identifier using 4 transcripts. // false // Design Representative Id // R J04423 J04423 // J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// J04423 // J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// AFFX-BioDn-5 // E. coli /GEN=bioD /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4980-5256 of gb:J04423.1, not 100% identical /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. // affx // // /// J04423 // Escherichia coli /REF=J04423 /DEF=E coli bioD gene dethiobiotin synthetase /LEN=676 (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// AFFX-BioDn-5 // // unknown // // /// AFFX-BioDn-5 // // unknown // // /// AFFX-BioDn-5 // // unknown // // /// AFFX-BioDn-5 // // unknown // // /// AFFX-BioDn-5 // // gb // // /// AFFX-BioDn-5 // E. coli /GEN=bioD /DB_XREF=gb:J04423.1 /NOTE=SIF corresponding to nucleotides 4980-5256 of gb:J04423.1, not 100% identical /DEF=E.coli 7,8-diamino-pelargonic acid (bioA), biotin synthetase (bioB), 7-keto-8-amino-pelargonic acid synthetase (bioF), bioC protein, and dethiobiotin synthetase (bioD), complete cds. // affx // // /// J04423 // J04423 E coli bioD gene dethiobiotin synthetase (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// // // affx // // /// // // affx // // /// AFFX-BioDn-5 // // unknown // // /// AFFX-BioDn-5 // // affx // // /// AFFX-BioDn-5 // // affx // // /// // // affx // // /// AFFX-BioDn-5 // // affx // // /// AFFX-BioDn-5 // // affx // // /// AFFX-BioDn-5 // // affx // // /// AFFX-BioDn-5 // // affx // // /// AFFX-BioDn-5 // // affx // // /// AFFX-BioDn-5 // // affx // // /// AFFX-BioDn-5 // // affx // // /// AFFX-BioDn-5 // // affx // // /// AFFX-BioDn-5 // // affx // // /// AFFX-BioDn-5 // // affx // // /// AFFX-BioDn-5 // // affx // // /// AFFX-BioDn-5 // // affx // // /// AFFX-BioDn-5 // // affx // // /// AFFX-BioDn-5 // // affx // // J04423
AFFX-CreX-3_at Medicago sativa 15-Nov-06 Consensus sequence AFFX-P1-cre Bacteriophage P1 /GEN=cre /DB_XREF=gb:X03453.1 /NOTE=SIF corresponding to nucleotides 1089-1495 of gb:X03453.1 /DEF=Bacteriophage P1 cre gene for recombinase protein. AFFX-CreX-3 P06956 /// Q38403 6310 // DNA recombination // inferred from electronic annotation /// 6313 // transposition, DNA-mediated // inferred from electronic annotation /// 15074 // DNA integration // inferred from electronic annotation 3677 // DNA binding // inferred from electronic annotation This probe set was annotated using the Design Representative Id based pipeline to a GenBank identifier using 4 transcripts. // false // Design Representative Id // R X03453 X03453 // X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// X03453 // X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// X03453 // X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// X03453 // X03453 /description=Bacteriophage P1 ORF2, putatitve cre protein // gb // // /// X03453 // X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// X03453 // X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// X03453 // X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// AFFX-CreX-3 // Bacteriophage P1 /GEN=cre /DB_XREF=gb:X03453.1 /NOTE=SIF corresponding to nucleotides 1089-1495 of gb:X03453.1 /DEF=Bacteriophage P1 cre gene for recombinase protein. // affx // // /// X03453 // Bacteriophage /REF=X03453 /DEF=Bacteriophage P1 cre recombinase protein /LEN=1058 (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// AFFX-CreX-3 // // unknown // // /// AFFX-CreX-3 // // unknown // // /// AFFX-CreX-3 // // unknown // // /// AFFX-CreX-3 // // unknown // // /// AFFX-CreX-3 // // gb // // /// AFFX-CreX-3 // Bacteriophage P1 /GEN=cre /DB_XREF=gb:X03453.1 /NOTE=SIF corresponding to nucleotides 1089-1495 of gb:X03453.1 /DEF=Bacteriophage P1 cre gene for recombinase protein. // affx // // /// X03453 // X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// // // affx // // /// // // affx // // /// AFFX-CreX-3 // // unknown // // /// AFFX-CreX-3 // // affx // // /// AFFX-CreX-3 // // affx // // /// // // affx // // /// AFFX-CreX-3 // // affx // // /// AFFX-CreX-3 // // affx // // /// AFFX-CreX-3 // // affx // // /// AFFX-CreX-3 // // affx // // /// AFFX-CreX-3 // // affx // // /// AFFX-CreX-3 // // affx // // /// AFFX-CreX-3 // // affx // // /// AFFX-CreX-3 // // affx // // /// AFFX-CreX-3 // // affx // // /// AFFX-CreX-3 // // affx // // /// AFFX-CreX-3 // // affx // // /// AFFX-CreX-3 // // affx // // /// AFFX-CreX-3 // // affx // // /// AFFX-CreX-3 // // affx // // X03453
AFFX-CreX-5_at Medicago sativa 15-Nov-06 Consensus sequence AFFX-P1-cre Bacteriophage P1 /GEN=cre /DB_XREF=gb:X03453.1 /NOTE=SIF corresponding to nucleotides 513-1047 of gb:X03453.1 /DEF=Bacteriophage P1 cre gene for recombinase protein. AFFX-CreX-5 P06956 /// Q38403 6310 // DNA recombination // inferred from electronic annotation /// 6313 // transposition, DNA-mediated // inferred from electronic annotation /// 15074 // DNA integration // inferred from electronic annotation 3677 // DNA binding // inferred from electronic annotation This probe set was annotated using the Design Representative Id based pipeline to a GenBank identifier using 4 transcripts. // false // Design Representative Id // R X03453 X03453 // X03453 /description=Bacteriophage P1 ORF2, putatitve cre protein // gb // // /// X03453 // X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// X03453 // X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// X03453 // X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// X03453 // X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// X03453 // X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// X03453 // X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// AFFX-CreX-5 // Bacteriophage P1 /GEN=cre /DB_XREF=gb:X03453.1 /NOTE=SIF corresponding to nucleotides 513-1047 of gb:X03453.1 /DEF=Bacteriophage P1 cre gene for recombinase protein. // affx // // /// X03453 // Bacteriophage /REF=X03453 /DEF=Bacteriophage P1 cre recombinase protein /LEN=1058 (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// AFFX-CreX-5 // // unknown // // /// AFFX-CreX-5 // // unknown // // /// AFFX-CreX-5 // // unknown // // /// AFFX-CreX-5 // // unknown // // /// AFFX-CreX-5 // // gb // // /// AFFX-CreX-5 // Bacteriophage P1 /GEN=cre /DB_XREF=gb:X03453.1 /NOTE=SIF corresponding to nucleotides 513-1047 of gb:X03453.1 /DEF=Bacteriophage P1 cre gene for recombinase protein. // affx // // /// X03453 // X03453 Bacteriophage P1 cre recombinase protein (-5 and -3 represent transcript regions 5 prime and 3 prime respectively) // gb // // /// // // affx // // /// // // affx // // /// AFFX-CreX-5 // // unknown // // /// AFFX-CreX-5 // // affx // // /// AFFX-CreX-5 // // affx // // /// // // affx // // /// AFFX-CreX-5 // // affx // // /// AFFX-CreX-5 // // affx // // /// AFFX-CreX-5 // // affx // // /// AFFX-CreX-5 // // affx // // /// AFFX-CreX-5 // // affx // // /// AFFX-CreX-5 // // affx // // /// AFFX-CreX-5 // // affx // // /// AFFX-CreX-5 // // affx // // /// AFFX-CreX-5 // // affx // // /// AFFX-CreX-5 // // affx // // /// AFFX-CreX-5 // // affx // // /// AFFX-CreX-5 // // affx // // /// AFFX-CreX-5 // // affx // // /// AFFX-CreX-5 // // affx // // X03453
AFFX-DapX-3_at Medicago sativa 15-Nov-06 Consensus sequence AFFX-Bs-dap B. subtilis /GEN=jojG /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 2684-3130 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. AFFX-DapX-3 P42975 /// P42976 /// P42977 /// P42978 /// P42979 /// P42980 /// P42981 /// P42982 6350 // transcription // inferred from electronic annotation /// 6355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 6464 // protein modification // inferred from electronic annotation /// 8652 // amino acid biosynthesis // inferred from electronic annotation /// 9085 // lysine biosynthesis // inferred from electronic annotation /// 9089 // lysine biosynthesis via diaminopimelate // inferred from electronic annotation /// 19877 // diaminopimelate biosynthesis // inferred from electronic annotation /// 1680 // tRNA 3'-terminal CCA addition // inferred from electronic annotation /// 6396 // RNA processing // inferred from electronic annotation /// 8033 // tRNA processing // inferred from electronic annotation /// 42245 // RNA repair // inferred from electronic annotation /// 19242 // methylglyoxal biosynthesis // inferred from electronic annotation /// 9058 // biosynthesis // inferred from electronic annotation 5737 // cytoplasm // inferred from electronic annotation /// 16020 // membrane // inferred from electronic annotation /// 16021 // integral to membrane // inferred from electronic annotation 3677 // DNA binding // inferred from electronic annotation /// 3824 // catalytic activity // inferred from electronic annotation /// 4077 // biotin-[acetyl-CoA-carboxylase] ligase activity // inferred from electronic annotation /// 16564 // transcriptional repressor activity // inferred from electronic annotation /// 16874 // ligase activity // inferred from electronic annotation /// 8839 // dihydrodipicolinate reductase activity // inferred from electronic annotation /// 16491 // oxidoreductase activity // inferred from electronic annotation /// 49 // tRNA binding // inferred from electronic annotation /// 166 // nucleotide binding // inferred from electronic annotation /// 287 // magnesium ion binding // inferred from electronic annotation /// 3723 // RNA binding // inferred from electronic annotation /// 4652 // polynucleotide adenylyltransferase activity // inferred from electronic annotation /// 4810 // tRNA adenylyltransferase activity // inferred from electronic annotation /// 5524 // ATP binding // inferred from electronic annotation /// 16437 // tRNA cytidylyltransferase activity // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 16779 // nucleotidyltransferase activity // inferred from electronic annotation /// 46872 // metal ion binding // inferred from electronic annotation /// 8929 // methylglyoxal synthase activity // inferred from electronic annotation /// 16829 // lyase activity // inferred from electronic annotation /// 16757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation This probe set was annotated using the Design Representative Id based pipeline to a GenBank identifier using 4 transcripts. // false // Design Representative Id // R L38424 L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// AFFX-DapX-3 // // unknown // // /// AFFX-DapX-3 // // unknown // // /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// AFFX-DapX-3 // // unknown // // /// AFFX-DapX-3 // // unknown // // /// AFFX-DapX-3 // // gb // // /// L38424 // Bacillus subtilis /REF=L38424 /DEF=B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1439-1846 of L38424 /LEN=1931 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// AFFX-DapX-3 // B. subtilis /GEN=jojG /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 2684-3130 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. // affx // // /// L38424 // Bacillus subtilis /REF=L38424 /DEF=B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 /LEN=1931 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// AFFX-DapX-3 // B. subtilis /GEN=jojG /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 2684-3130 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. // affx // // /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// // // affx // // /// // // affx // // /// AFFX-DapX-3 // // unknown // // /// AFFX-DapX-3 // // affx // // /// AFFX-DapX-3 // // affx // // /// // // affx // // /// AFFX-DapX-3 // // affx // // /// AFFX-DapX-3 // // affx // // /// AFFX-DapX-3 // // affx // // /// AFFX-DapX-3 // // affx // // /// AFFX-DapX-3 // // affx // // /// AFFX-DapX-3 // // affx // // /// AFFX-DapX-3 // // affx // // /// AFFX-DapX-3 // // affx // // /// AFFX-DapX-3 // // affx // // /// AFFX-DapX-3 // // affx // // /// AFFX-DapX-3 // // affx // // /// AFFX-DapX-3 // // affx // // /// AFFX-DapX-3 // // affx // // /// AFFX-DapX-3 // // affx // // L38424
AFFX-DapX-5_at Medicago sativa 15-Nov-06 Consensus sequence AFFX-Bs-dap B. subtilis /GEN=dapB /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 1428-1926 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. AFFX-DapX-5 P42975 /// P42976 /// P42977 /// P42978 /// P42979 /// P42980 /// P42981 /// P42982 6350 // transcription // inferred from electronic annotation /// 6355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 6464 // protein modification // inferred from electronic annotation /// 8652 // amino acid biosynthesis // inferred from electronic annotation /// 9085 // lysine biosynthesis // inferred from electronic annotation /// 9089 // lysine biosynthesis via diaminopimelate // inferred from electronic annotation /// 19877 // diaminopimelate biosynthesis // inferred from electronic annotation /// 1680 // tRNA 3'-terminal CCA addition // inferred from electronic annotation /// 6396 // RNA processing // inferred from electronic annotation /// 8033 // tRNA processing // inferred from electronic annotation /// 42245 // RNA repair // inferred from electronic annotation /// 19242 // methylglyoxal biosynthesis // inferred from electronic annotation /// 9058 // biosynthesis // inferred from electronic annotation 5737 // cytoplasm // inferred from electronic annotation /// 16020 // membrane // inferred from electronic annotation /// 16021 // integral to membrane // inferred from electronic annotation 3677 // DNA binding // inferred from electronic annotation /// 3824 // catalytic activity // inferred from electronic annotation /// 4077 // biotin-[acetyl-CoA-carboxylase] ligase activity // inferred from electronic annotation /// 16564 // transcriptional repressor activity // inferred from electronic annotation /// 16874 // ligase activity // inferred from electronic annotation /// 8839 // dihydrodipicolinate reductase activity // inferred from electronic annotation /// 16491 // oxidoreductase activity // inferred from electronic annotation /// 49 // tRNA binding // inferred from electronic annotation /// 166 // nucleotide binding // inferred from electronic annotation /// 287 // magnesium ion binding // inferred from electronic annotation /// 3723 // RNA binding // inferred from electronic annotation /// 4652 // polynucleotide adenylyltransferase activity // inferred from electronic annotation /// 4810 // tRNA adenylyltransferase activity // inferred from electronic annotation /// 5524 // ATP binding // inferred from electronic annotation /// 16437 // tRNA cytidylyltransferase activity // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 16779 // nucleotidyltransferase activity // inferred from electronic annotation /// 46872 // metal ion binding // inferred from electronic annotation /// 8929 // methylglyoxal synthase activity // inferred from electronic annotation /// 16829 // lyase activity // inferred from electronic annotation /// 16757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation This probe set was annotated using the Design Representative Id based pipeline to a GenBank identifier using 4 transcripts. // false // Design Representative Id // R L38424 L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// AFFX-DapX-5 // // unknown // // /// AFFX-DapX-5 // // unknown // // /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// AFFX-DapX-5 // // unknown // // /// AFFX-DapX-5 // // unknown // // /// AFFX-DapX-5 // // gb // // /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// L38424 // Bacillus subtilis /REF=L38424 /DEF=B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1439-1846 of L38424 /LEN=1931 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// AFFX-DapX-5 // B. subtilis /GEN=dapB /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 1428-1926 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. // affx // // /// L38424 // Bacillus subtilis /REF=L38424 /DEF=B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 /LEN=1931 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// AFFX-DapX-5 // B. subtilis /GEN=dapB /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 1428-1926 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. // affx // // /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// // // affx // // /// // // affx // // /// AFFX-DapX-5 // // unknown // // /// AFFX-DapX-5 // // affx // // /// AFFX-DapX-5 // // affx // // /// // // affx // // /// AFFX-DapX-5 // // affx // // /// AFFX-DapX-5 // // affx // // /// AFFX-DapX-5 // // affx // // /// AFFX-DapX-5 // // affx // // /// AFFX-DapX-5 // // affx // // /// AFFX-DapX-5 // // affx // // /// AFFX-DapX-5 // // affx // // /// AFFX-DapX-5 // // affx // // /// AFFX-DapX-5 // // affx // // /// AFFX-DapX-5 // // affx // // /// AFFX-DapX-5 // // affx // // /// AFFX-DapX-5 // // affx // // /// AFFX-DapX-5 // // affx // // /// AFFX-DapX-5 // // affx // // L38424
AFFX-DapX-M_at Medicago sativa 15-Nov-06 Consensus sequence AFFX-Bs-dap B. subtilis /GEN=dapB, jojF /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 2020-2580 of gb:L38424.1, not 100% identical /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. AFFX-DapX-M P42975 /// P42976 /// P42977 /// P42978 /// P42979 /// P42980 /// P42981 /// P42982 6350 // transcription // inferred from electronic annotation /// 6355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 6464 // protein modification // inferred from electronic annotation /// 8652 // amino acid biosynthesis // inferred from electronic annotation /// 9085 // lysine biosynthesis // inferred from electronic annotation /// 9089 // lysine biosynthesis via diaminopimelate // inferred from electronic annotation /// 19877 // diaminopimelate biosynthesis // inferred from electronic annotation /// 1680 // tRNA 3'-terminal CCA addition // inferred from electronic annotation /// 6396 // RNA processing // inferred from electronic annotation /// 8033 // tRNA processing // inferred from electronic annotation /// 42245 // RNA repair // inferred from electronic annotation /// 19242 // methylglyoxal biosynthesis // inferred from electronic annotation /// 9058 // biosynthesis // inferred from electronic annotation 5737 // cytoplasm // inferred from electronic annotation /// 16020 // membrane // inferred from electronic annotation /// 16021 // integral to membrane // inferred from electronic annotation 3677 // DNA binding // inferred from electronic annotation /// 3824 // catalytic activity // inferred from electronic annotation /// 4077 // biotin-[acetyl-CoA-carboxylase] ligase activity // inferred from electronic annotation /// 16564 // transcriptional repressor activity // inferred from electronic annotation /// 16874 // ligase activity // inferred from electronic annotation /// 8839 // dihydrodipicolinate reductase activity // inferred from electronic annotation /// 16491 // oxidoreductase activity // inferred from electronic annotation /// 49 // tRNA binding // inferred from electronic annotation /// 166 // nucleotide binding // inferred from electronic annotation /// 287 // magnesium ion binding // inferred from electronic annotation /// 3723 // RNA binding // inferred from electronic annotation /// 4652 // polynucleotide adenylyltransferase activity // inferred from electronic annotation /// 4810 // tRNA adenylyltransferase activity // inferred from electronic annotation /// 5524 // ATP binding // inferred from electronic annotation /// 16437 // tRNA cytidylyltransferase activity // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 16779 // nucleotidyltransferase activity // inferred from electronic annotation /// 46872 // metal ion binding // inferred from electronic annotation /// 8929 // methylglyoxal synthase activity // inferred from electronic annotation /// 16829 // lyase activity // inferred from electronic annotation /// 16757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 4 transcripts. // false // Design Representative Id // R AFFX-DapX-M AFFX-DapX-M // // unknown // // /// AFFX-DapX-M // // unknown // // /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// AFFX-DapX-M // // unknown // // /// AFFX-DapX-M // // unknown // // /// AFFX-DapX-M // // gb // // /// L38424 // Bacillus subtilis /REF=L38424 /DEF=B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1439-1846 of L38424 /LEN=1931 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// AFFX-DapX-M // B. subtilis /GEN=dapB, jojF /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 2020-2580 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. // affx // // /// L38424 // Bacillus subtilis /REF=L38424 /DEF=B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 /LEN=1931 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// AFFX-DapX-M // B. subtilis /GEN=dapB, jojF /DB_XREF=gb:L38424.1 /NOTE=SIF corresponding to nucleotides 2020-2580 of gb:L38424.1 /DEF=Bacillus subtilis dihydropicolinate reductase (jojE) gene, complete cds; poly(A) polymerase (jojI) gene, complete cds; biotin acetyl-CoA-carboxylase ligase (birA) gene, complete cds; jojC, jojD, jojF, jojG, jojH genes, complete cds's. // affx // // /// L38424 // L38424 B subtilis dapB, jojF, jojG genes corresponding to nucleotides 1358-3197 of L38424 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// // // affx // // /// // // affx // // /// AFFX-DapX-M // // unknown // // /// AFFX-DapX-M // // affx // // /// AFFX-DapX-M // // affx // // /// // // affx // // /// AFFX-DapX-M // // affx // // /// AFFX-DapX-M // // affx // // /// AFFX-DapX-M // // affx // // /// AFFX-DapX-M // // affx // // /// AFFX-DapX-M // // affx // // /// AFFX-DapX-M // // affx // // /// AFFX-DapX-M // // affx // // /// AFFX-DapX-M // // affx // // /// AFFX-DapX-M // // affx // // /// AFFX-DapX-M // // affx // // /// AFFX-DapX-M // // affx // // /// AFFX-DapX-M // // affx // // /// AFFX-DapX-M // // affx // // /// AFFX-DapX-M // // affx // // AFFX-DapX-M
AFFX-LysX-3_at Medicago sativa 15-Nov-06 Consensus sequence AFFX-Bs-lys B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 1061-1343 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). AFFX-LysX-3 P23630 8652 // amino acid biosynthesis // inferred from electronic annotation /// 9085 // lysine biosynthesis // inferred from electronic annotation /// 9089 // lysine biosynthesis via diaminopimelate // inferred from electronic annotation 3824 // catalytic activity // inferred from electronic annotation /// 8836 // diaminopimelate decarboxylase activity // inferred from electronic annotation /// 16829 // lyase activity // inferred from electronic annotation /// 16831 // carboxy-lyase activity // inferred from electronic annotation This probe set was annotated using the Design Representative Id based pipeline to a GenBank identifier using 4 transcripts. // false // Design Representative Id // R X17013 X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// X17013 // Bacillus subtilis /REF=X17013 /DEF=B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 1008-1263 of X17013 /LEN=1108 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// AFFX-LysX-3 // B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 1061-1343 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). // affx // // /// X17013 // Bacillus subtilis /REF=X17013 /DEF=B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 /LEN=1108 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// AFFX-LysX-3 // // unknown // // /// AFFX-LysX-3 // // unknown // // /// AFFX-LysX-3 // // unknown // // /// AFFX-LysX-3 // // unknown // // /// AFFX-LysX-3 // // gb // // /// AFFX-LysX-3 // B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 1061-1343 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). // affx // // /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// // // affx // // /// // // affx // // /// AFFX-LysX-3 // // unknown // // /// AFFX-LysX-3 // // affx // // /// AFFX-LysX-3 // // affx // // /// // // affx // // /// AFFX-LysX-3 // // affx // // /// AFFX-LysX-3 // // affx // // /// AFFX-LysX-3 // // affx // // /// AFFX-LysX-3 // // affx // // /// AFFX-LysX-3 // // affx // // /// AFFX-LysX-3 // // affx // // /// AFFX-LysX-3 // // affx // // /// AFFX-LysX-3 // // affx // // /// AFFX-LysX-3 // // affx // // /// AFFX-LysX-3 // // affx // // /// AFFX-LysX-3 // // affx // // /// AFFX-LysX-3 // // affx // // /// AFFX-LysX-3 // // affx // // /// AFFX-LysX-3 // // affx // // X17013
AFFX-LysX-5_at Medicago sativa 15-Nov-06 Consensus sequence AFFX-Bs-lys B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 387-658 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). AFFX-LysX-5 P23630 8652 // amino acid biosynthesis // inferred from electronic annotation /// 9085 // lysine biosynthesis // inferred from electronic annotation /// 9089 // lysine biosynthesis via diaminopimelate // inferred from electronic annotation 3824 // catalytic activity // inferred from electronic annotation /// 8836 // diaminopimelate decarboxylase activity // inferred from electronic annotation /// 16829 // lyase activity // inferred from electronic annotation /// 16831 // carboxy-lyase activity // inferred from electronic annotation This probe set was annotated using the Design Representative Id based pipeline to a GenBank identifier using 4 transcripts. // false // Design Representative Id // R X17013 X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// AFFX-LysX-5 // B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 387-658 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). // affx // // /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// X17013 // Bacillus subtilis /REF=X17013 /DEF=B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 1008-1263 of X17013 /LEN=1108 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// X17013 // Bacillus subtilis /REF=X17013 /DEF=B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 /LEN=1108 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// AFFX-LysX-5 // // unknown // // /// AFFX-LysX-5 // // unknown // // /// AFFX-LysX-5 // // unknown // // /// AFFX-LysX-5 // // unknown // // /// AFFX-LysX-5 // // gb // // /// AFFX-LysX-5 // B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 387-658 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). // affx // // /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// // // affx // // /// // // affx // // /// AFFX-LysX-5 // // unknown // // /// AFFX-LysX-5 // // affx // // /// AFFX-LysX-5 // // affx // // /// // // affx // // /// AFFX-LysX-5 // // affx // // /// AFFX-LysX-5 // // affx // // /// AFFX-LysX-5 // // affx // // /// AFFX-LysX-5 // // affx // // /// AFFX-LysX-5 // // affx // // /// AFFX-LysX-5 // // affx // // /// AFFX-LysX-5 // // affx // // /// AFFX-LysX-5 // // affx // // /// AFFX-LysX-5 // // affx // // /// AFFX-LysX-5 // // affx // // /// AFFX-LysX-5 // // affx // // /// AFFX-LysX-5 // // affx // // /// AFFX-LysX-5 // // affx // // /// AFFX-LysX-5 // // affx // // X17013
AFFX-LysX-M_at Medicago sativa 15-Nov-06 Consensus sequence AFFX-Bs-lys B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 720-990 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). AFFX-LysX-M P23630 8652 // amino acid biosynthesis // inferred from electronic annotation /// 9085 // lysine biosynthesis // inferred from electronic annotation /// 9089 // lysine biosynthesis via diaminopimelate // inferred from electronic annotation 3824 // catalytic activity // inferred from electronic annotation /// 8836 // diaminopimelate decarboxylase activity // inferred from electronic annotation /// 16829 // lyase activity // inferred from electronic annotation /// 16831 // carboxy-lyase activity // inferred from electronic annotation This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 4 transcripts. // false // Design Representative Id // R AFFX-LysX-M AFFX-LysX-M // B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 720-990 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). // affx // // /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// X17013 // Bacillus subtilis /REF=X17013 /DEF=B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 1008-1263 of X17013 /LEN=1108 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// X17013 // Bacillus subtilis /REF=X17013 /DEF=B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 /LEN=1108 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// AFFX-LysX-M // // unknown // // /// AFFX-LysX-M // // unknown // // /// AFFX-LysX-M // // unknown // // /// AFFX-LysX-M // // unknown // // /// AFFX-LysX-M // // gb // // /// AFFX-LysX-M // B. subtilis /GEN=lys /DB_XREF=gb:X17013.1 /NOTE=SIF corresponding to nucleotides 720-990 of gb:X17013.1, not 100% identical /DEF=B subtilis lys gene for diaminopimelate decarboxylase (EC 4.1.1.20). // affx // // /// X17013 // X17013 B subtilis lys gene for diaminopimelate decarboxylase corresponding to nucleotides 350-1345 of X17013 (-5, -M, -3 represent transcript regions 5 prime, Middle, and 3 prime respectively) // gb // // /// // // affx // // /// // // affx // // /// AFFX-LysX-M // // unknown // // /// AFFX-LysX-M // // affx // // /// AFFX-LysX-M // // affx // // /// // // affx // // /// AFFX-LysX-M // // affx // // /// AFFX-LysX-M // // affx // // /// AFFX-LysX-M // // affx // // /// AFFX-LysX-M // // affx // // /// AFFX-LysX-M // // affx // // /// AFFX-LysX-M // // affx // // /// AFFX-LysX-M // // affx // // /// AFFX-LysX-M // // affx // // /// AFFX-LysX-M // // affx // // /// AFFX-LysX-M // // affx // // /// AFFX-LysX-M // // affx // // /// AFFX-LysX-M // // affx // // /// AFFX-LysX-M // // affx // // /// AFFX-LysX-M // // affx // // AFFX-LysX-M
AFFX-Msa-actin-3_at Medicago sativa 15-Nov-06 Consensus sequence Msa.2780.1 M. sativa /GEN=actin /DB_XREF=iMsa.2780 /FEA=mRNA /DEF=actin gi|50319677|gb|CO514803.1|CO514803 This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcripts. // false // Design Representative Id // R gi|50319677|gb|CO514803.1|CO514803 gi|50319677|gb|CO514803.1|CO514803 // // affx // // CO514803.1
AFFX-Msa-actin-5_at Medicago sativa 15-Nov-06 Consensus sequence Msa.2780.1 M. sativa /GEN=actin /DB_XREF=iMsa.2780 /FEA=mRNA /DEF=actin gi|50319677|gb|CO514803.1|CO514803 This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcripts. // false // Design Representative Id // R gi|50319677|gb|CO514803.1|CO514803 gi|50319677|gb|CO514803.1|CO514803 // // affx // // CO514803.1
AFFX-Msa-actin-M_at Medicago sativa 15-Nov-06 Consensus sequence Msa.2780.1 M. sativa /GEN=actin /DB_XREF=iMsa.2780 /FEA=mRNA /DEF=actin gi|50319677|gb|CO514803.1|CO514803 This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcripts. // false // Design Representative Id // R gi|50319677|gb|CO514803.1|CO514803 gi|50319677|gb|CO514803.1|CO514803 // // affx // // CO514803.1
AFFX-Msa-gapc-3_at Medicago sativa 15-Nov-06 Consensus sequence Msa.3152.1 M. sativa /GEN=gapc /DB_XREF=iMsa.3152 /FEA=mRNA /DEF=gapc TC451 This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcripts. // false // Design Representative Id // R TC451 TC451 // // affx // // TIGR:TC451
AFFX-Msa-gapc-5_at Medicago sativa 15-Nov-06 Consensus sequence Msa.3152.1 M. sativa /GEN=gapc /DB_XREF=iMsa.3152 /FEA=mRNA /DEF=gapc TC451 This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcripts. // false // Design Representative Id // R TC451 TC451 // // affx // // TIGR:TC451

Total number of rows: 61278

Table truncated, full table size 29430 Kbytes.




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