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Platform GPL4345 Query DataSets for GPL4345
Status Public on Sep 20, 2006
Title deLaat_4C_2005_06
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Nimblegen Systems Inc.
Manufacture protocol Details on the manufacture protocol can be found on http://www.nimblegen.com/technology/index.html
 
 
Contributor(s) Simonis M, de Laat W
Submission date Sep 19, 2006
Last update date Sep 25, 2006
Contact name Wouter de Laat
E-mail(s) w.delaat@erasmusmc.nl
Phone 31-10-4087164
Fax 31-10-4089468
URL http://www2.eur.nl/fgg/ch1/delaat.html
Organization name Erasmus MC
Department Cell Biology
Street address Dr. Molewaterplein 50
City Rotterdam
ZIP/Postal code 3015 GE
Country Netherlands
 
Samples (4) GSM136949, GSM136953, GSM136954, GSM136955
Series (1)
GSE5891 Nuclear organization of active and inactive chromatin domains revealed by 4C technology

Data table header descriptions
ID
PROBE_SEQUENCE nucleotide sequence of the oligo
SEQ_ID mouse chromosome (NCBI m33), or mouse beta-globin like gene cluster (http://globin.cse.psu.edu/) to which the oligo sequence maps, random sequence, or sequence complementary to indicated ID
RANGE_START
RANGE_END
RANGE_GB
SPOT_ID

Data table
ID PROBE_SEQUENCE SEQ_ID RANGE_START RANGE_END RANGE_GB SPOT_ID
MMUS3C0000000003 CCCTCCTGATCTTCAACAACAAATGCAAGGGGCAGCAACAGCATTGGCCCAGGCCCAGGC 8 3006045 3006104 NC_000074.1
MMUS3C0000000004 CACCTCTACAACCACCACACTTCCAGTCCCTTGGGACAACTCCCCAGGGAGGGAATGGTG 8 3006153 3006212 NC_000074.1
MMUS3C0000000005 GGAACAAAAACCGAAACCCTCCATTCCAGTGTTCCTCTGACATGACCCCCTATAAGCCTG 8 3006213 3006272 NC_000074.1
MMUS3C0000000007 AAGGGAATGATTTATAACTTGCCTTTTGGATAGAGGGCCAAAGGTTCAAAAAGCAAGATG 8 3013070 3013129 NC_000074.1
MMUS3C0000000008 GCCAGTAGTGGCTAGGAGAGGCAAGTGCAGAAAAAGCACTGAGAGGAGTTAGGGTGGGTC 8 3013145 3013204 NC_000074.1
MMUS3C0000000009 GTAGCCAGTAGAAGGAAACTTGGACCTCCTTTTGTGCTTGATCCTCTTGTTGCAGAATAT 8 3013241 3013300 NC_000074.1
MMUS3C0000000010 TGTAGGTTGGGTATAGCGTCTTTGGCATAGCTATTAGTGTAGAGCTTACCCACAATTCCC 8 3013357 3013416 NC_000074.1
MMUS3C0000000011 GAATGAAATTCAAAACCAGAGACTACACCATATACAAAAGAGGCAACAATAGAAAACAGG 8 3031379 3031438 NC_000074.1
MMUS3C0000000012 TTATGGCAAGATATAGTGGAGGAAATGGGGGCAAGAATTGAAAAACAGTCATTTCCATAG 8 3035621 3035680 NC_000074.1
MMUS3C0000000014 CTCTGGGAGATAGCCAGAAGTCAGAGATTCACCCCTGACTCTGAGGAATTTGGATACATG 8 3038370 3038429 NC_000074.1
MMUS3C0000000015 GCTCTTAATGGGGAATAACCACATTTGAGGACAGACCCCATGTTAATTTGTAGGGATTAT 8 3038213 3038272 NC_000074.1
MMUS3C0000000016 GTCAGTCTCTCTATTGAAACTCTGGGAGATAGCCAGAAGTCAGAGATTCACCCCTGACTC 8 3038351 3038410 NC_000074.1
MMUS3C0000000017 AGGAATTTGGATACATGAAACTCAGGAGAGGTAACTAGCCATGTGGTAGACATAGAAAAT 8 3038413 3038472 NC_000074.1
MMUS3C0000000018 TCATAAATAAATAAGCATTCAAGTCATTTTAGGGGAACTGGAGTGTGAGTGGAAAGGCCC 8 3038536 3038595 NC_000074.1
MMUS3C0000000019 TCTTTTCTCTCTCTCTTTCATCCATCACTACGAACTCCCAGGATAGCCATGATTTTCTAG 8 3051617 3051676 NC_000074.1
MMUS3C0000000020 CTTCTGAAACCAAAATGAGTCTCATGACCCAATAGCTACTTGTTTCCTTCCCAGCAACAG 8 3051695 3051754 NC_000074.1
MMUS3C0000000021 GTCCTTTTTGGTAGGGTCACCCAAGTTGGTGCACCTTTCCAGAAAAGATGGAAAAGAGTA 8 3051780 3051839 NC_000074.1
MMUS3C0000000022 GGAGCCATGCTGGCCCCGCCTTGATTTCCAGAGTTCTCAAGATTGCACAAGGCCAAACAG 8 3051893 3051952 NC_000074.1
MMUS3C0000000023 TAGGTTTCATAGCAGGATTTCTCCAAATACCCTTGCATCAGCTATTTGTGTAAGAGGTGC 8 3052026 3052085 NC_000074.1
MMUS3C0000000024 CAGCCTCATGGGTCTAAACAGGGTGAGAAATCATGGTCAGAAAACCCAGATTCCCTTTGC 8 3052093 3052152 NC_000074.1

Total number of rows: 387666

Table truncated, full table size 43139 Kbytes.




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