GEO help: Mouse over screen elements for information.
Status
Public on Aug 30, 2006
Title
Sentrix Mouse-6 Expression BeadChip
Technology type
oligonucleotide beads
Distribution
commercial
Organism
Mus musculus Manufacturer
Illumina Inc.
Manufacture protocol
http://www.illumina.com/technology/platform/tech_plat_arraymfg.ilmn Catalog number
BD-26-103
Description
The Sentrix Mouse-6 BeadChip can be used to study expression of over 47,000 mouse transcripts based on MEEBO, RefSeq and RIKEN FANTOM2 content. researchers can generate whole-genome expression profiles for 6 samples in parallel on a single BeadChip. Each array is composed of 3 micron features with average feature redundancy of 30-fold . All features are QCed by a sequential hybridization process called array decoding. The probes are fully screened all-full-length 50-mers and the assay requires 50-100ng of total RNA input.
Web link
http://www.illumina.com/General/pdf/mouse68.pdf Submission date
Aug 28, 2006
Last update date
Aug 30, 2006
Organization
Illumina Inc.
E-mail(s)
expression@illumina.com, techsupport@illumina.com Phone
1 800 809 4566
URL
http://www.illumina.com Street address
9885 Towne Centre Drive
City
San Diego
State/province
CA
ZIP/Postal code
92121
Country
USA
Samples (303)
GSM160935 , GSM160936 , GSM160937 , GSM160938 , GSM160939 , GSM160940
GSM170834 ,
GSM170836 ,
GSM170837 ,
GSM170838 ,
GSM170839 ,
GSM170840 ,
GSM170851 ,
GSM170852 ,
GSM170854 ,
GSM170856 ,
GSM170859 ,
GSM170860 ,
GSM170861 ,
GSM170863 ,
GSM170864 ,
GSM206408 ,
GSM206409 ,
GSM206411 ,
GSM206412 ,
GSM206413 ,
GSM206414 ,
GSM206887 ,
GSM206888 ,
GSM206889 ,
GSM206890 ,
GSM206891 ,
GSM206892 ,
GSM206893 ,
GSM206894 ,
GSM206895 ,
GSM206896 ,
GSM213769 ,
GSM213771 ,
GSM224737 ,
GSM224738 ,
GSM224739 ,
GSM224740 ,
GSM224741 ,
GSM224742 ,
GSM224743 ,
GSM224744 ,
GSM224745 ,
GSM224746 ,
GSM224747 ,
GSM224748 ,
GSM224749 ,
GSM224750 ,
GSM224751 ,
GSM224752 ,
GSM224753 ,
GSM224754 ,
GSM226595 ,
GSM226596 ,
GSM226597 ,
GSM226598 ,
GSM226599 ,
GSM226600 ,
GSM226601 ,
GSM226602 ,
GSM226603 ,
GSM226604 ,
GSM226605 ,
GSM226606 ,
GSM231028 ,
GSM231029 ,
GSM231030 ,
GSM231031 ,
GSM231032 ,
GSM231033 ,
GSM231034 ,
GSM231035 ,
GSM231036 ,
GSM231037 ,
GSM231038 ,
GSM231039 ,
GSM231040 ,
GSM231041 ,
GSM231042 ,
GSM231043 ,
GSM231044 ,
GSM231045 ,
GSM231046 ,
GSM231047 ,
GSM231048 ,
GSM231049 ,
GSM231050 ,
GSM231051 ,
GSM231052 ,
GSM231053 ,
GSM231054 ,
GSM231055 ,
GSM231056 ,
GSM231057 ,
GSM237606 ,
GSM237607 ,
GSM237608 ,
GSM237609 ,
GSM237610 ,
GSM237611 ,
GSM239093 ,
GSM239094 ,
GSM239095 ,
GSM239096 ,
GSM239097 ,
GSM239098 ,
GSM245348 ,
GSM245349 ,
GSM245350 ,
GSM245351 ,
GSM245352 ,
GSM245353 ,
GSM245354 ,
GSM245355 ,
GSM245356 ,
GSM245357 ,
GSM245358 ,
GSM245359 ,
GSM260706 ,
GSM260707 ,
GSM260708 ,
GSM260709 ,
GSM260710 ,
GSM260711 ,
GSM260712 ,
GSM260713 ,
GSM260714 ,
GSM260715 ,
GSM260716 ,
GSM260717 ,
GSM343753 ,
GSM343754 ,
GSM343755 ,
GSM343756 ,
GSM343757 ,
GSM343758 ,
GSM343759 ,
GSM343760 ,
GSM343761 ,
GSM343762 ,
GSM343763 ,
GSM343764 ,
GSM357146 ,
GSM357425 ,
GSM357426 ,
GSM357452 ,
GSM357453 ,
GSM357454 ,
GSM357455 ,
GSM357456 ,
GSM357457 ,
GSM357458 ,
GSM357459 ,
GSM357460 ,
GSM357471 ,
GSM357472 ,
GSM357473 ,
GSM357474 ,
GSM357475 ,
GSM357476 ,
GSM357477 ,
GSM357478 ,
GSM357479 ,
GSM357480 ,
GSM357481 ,
GSM357482 ,
GSM366239 ,
GSM366243 ,
GSM366244 ,
GSM369358 ,
GSM369990 ,
GSM369991 ,
GSM369992 ,
GSM369993 ,
GSM369994 ,
GSM369995 ,
GSM370086 ,
GSM370087 ,
GSM370088 ,
GSM370089 ,
GSM370090 ,
GSM370091 ,
GSM370092 ,
GSM370093 ,
GSM428128 ,
GSM428129 ,
GSM428130 ,
GSM428131 ,
GSM428132 ,
GSM428133 ,
GSM428134 ,
GSM428135 ,
GSM428136 ,
GSM428137 ,
GSM428138 ,
GSM428139 ,
GSM428140 ,
GSM428141 ,
GSM428142 ,
GSM428143 ,
GSM428144 ,
GSM428145 ,
GSM520285 ,
GSM520286 ,
GSM520287 ,
GSM520288 ,
GSM520289 ,
GSM520290 ,
GSM520291 ,
GSM520292 ,
GSM520293 ,
GSM520294 ,
GSM520295 ,
GSM520296 ,
GSM520297 ,
GSM520298 ,
GSM520299 ,
GSM520300 ,
GSM520301 ,
GSM520302 ,
GSM520303 ,
GSM520304 ,
GSM520305 ,
GSM520306 ,
GSM520307 ,
GSM520308 ,
GSM520309 ,
GSM520310 ,
GSM520311 ,
GSM520312 ,
GSM520313 ,
GSM520314 ,
GSM520315 ,
GSM520316 ,
GSM520317 ,
GSM520318 ,
GSM520319 ,
GSM520320 ,
GSM520321 ,
GSM520322 ,
GSM520323 ,
GSM520324 ,
GSM520325 ,
GSM520326 ,
GSM520327 ,
GSM520328 ,
GSM520329 ,
GSM520330 ,
GSM520331 ,
GSM520332 ,
GSM520333 ,
GSM520334 ,
GSM520335 ,
GSM520336 ,
GSM520337 ,
GSM520338 ,
GSM520339 ,
GSM520340 ,
GSM520341 ,
GSM520342 ,
GSM520343 ,
GSM520344 ,
GSM520345 ,
GSM520346 ,
GSM520347 ,
GSM520348 ,
GSM520349 ,
GSM520350 ,
GSM520351 ,
GSM520352 ,
GSM520353 ,
GSM520354 ,
GSM520355 ,
GSM520356 ,
GSM520357 ,
GSM520358 ,
GSM520359 ,
GSM520360 ,
GSM520361 ,
GSM520362 ,
GSM520363 ,
GSM520364 ,
GSM520365 ,
GSM520366 ,
GSM520367 ,
GSM520368 ,
GSM520369 ,
GSM520370 ,
GSM520371 ,
GSM520372 ,
GSM520373 ,
GSM520374 ,
GSM520375 ,
GSM520376 ,
GSM520377 ,
GSM520378 ,
GSM520379 ,
GSM520380 Series (17)
GSE6986 IKKa regulated gene expression
GSE7238 Ets2 is required for trophoblast stem cell self renewal
GSE8328 Matrix metalloproteinase-3 mediates cardiac differentiation of mouse embryonic stem cells
GSE8349 Microarray platform comparison study of hippocampal gene expression in DCLK1 transgenic and wild-type mice
GSE8632 RNA binding activity of the recessive parkinsonism protein DJ-1
GSE8870 Global Patterns of Gene Expression Associated with Vulnerability and Resilience to Social Defeat
GSE8937 Jmjd1a / Jmjd2c RNAi expression profile
GSE9134 Genome-wide gene expression in HDAC5 wildtype and knockout mice treated with chronic cocaine or saline
GSE9328 ATF2 knockout in papillomas
GSE9431 Regulatory NK cells: IL-18-elicited NK cells with immunosuppressive functions
GSE9726 Effects of iron overload on gene expression in the cardiac and skeletal muscle of mice
GSE10318 Tbx2 and Tbx3 impose nodal phenotype and induce cushion formation in the atrioventricular canal
GSE13665 Pituitaries of basal and stressed Crhr1 wild type and knockout mice
GSE14290 Microarray analysis of gene expression in the kidneys and testes of mice after low-dose-rate irradiation
GSE14674 Virally infected LSEC trigger CD8 T cell immunity
GSE17117 Differential response of C57BL/6J mouse and DBA/2J mouse to optic nerve crush
GSE20724 Genome-wide expression analysis of mouse chromosome 2 in gonadal fat and liver tissues reveals a complex architecture of obesity
Data table header descriptions ID ILLUMINA SPOT_ID Unique probe identifier
SOURCE Source of mRNA sequences used for probe design
TARGET_SEQUENCE Sequence (as identified by the SOURCE database)
GB_ACC RefSeq accession in case there's TARGET_SEQUENCE has a RefSeq mapping
GI GI number in case there's TARGET_SEQUENCE has a RefSeq mapping
SEQUENCE Probe sequence (50mer)
RANGE_START Probe start position within GB_ACC or TARGET_SEQUENCE
RANGE_END Probe end position within GB_ACC or TARGET_SEQUENCE
GENE_SYMBOL Gene symbol associated with GB_ACC accession
SPOT_ID identifiers for probes without GB_ACC
Data table ID ILLUMINA SPOT_ID SOURCE TARGET_SEQUENCE GB_ACC GI SEQUENCE RANGE_START RANGE_END GENE_SYMBOL SPOT_ID 105290026
105290026
RefSeq
XM_356462.1
XM_356462.1 38090455
GATGGTGACCGTCTTATCACAGAACCTCTGCCGGAACTACAGCTGGTGGA
760
809
LOC382362
610369
610369
MEEBO
scl0011717.2_283
NM_009667.1 6753047
ACCGATGACCCCATGCAGTTTCACTACACAAAGAAGCGCTCATGGAGGAG
1979
2028
Ampd3
1450014
1450014
MEEBO
scl52892.1.1_103
NM_176907.2 31342363
GGTGTCTTTAACAAATCCCTCCAAAGTGAGCTTAATTTGACAAACATGGA
1919
1968
D830016O14Rik
380019
380019
MEEBO
scl0012946.2_3
NM_013499.1 7304978
CGGAACCCAGCGCCATTTCTGGGTGGGACTGCTTTCTACACCATTTGCCG
400
449
Crry
100430441
100430441
MEEBO
scl18939.11_88
NM_007914 6681286
CCACCCTACAGACTAAATGTTGTAACAGAACATGGACAGCTTTGGTATCT
17
66
Ehf
610088
610088
MEEBO
scl45217.22.1_37
NM_028315.1 39930442
CTCAACAGCAACAAAATGGAGAGCATACTTACAGACTCCTGTGCGATAGC
2884
2933
2810028N01Rik
870181
870181
MEEBO
scl056379.2_58
NM_019659 31543034
CCTGGAGTGTGTATGATGCTAACACCGAATGGTTCTTGTGTTTCTCTGCC
2732
2781
Kcnj1
103060390
103060390
Riken
ri|D130099D04|PX00187M10|AK051805|1507
AK051805 GCTCAGGGCCAGGGTCAGGGTCAGAGTGAGGGTCAATTTCGGTTCTGGTT
1191
1240
D130099D04Rik
4480390
4480390
MEEBO
scl0018933.1_65
NM_011127.1 6755115
CTCAAGTCCTACTCAGGAGACGTGACTGCTGTGGAGCAACCCATCGTACC
633
682
Prrx1
101940014
101940014
Riken
ri|A430065A10|PX00137F11|AK040115|1649
AK040115 ACAGAGGTTGGAGATAGAAGTGAGGAGAGAGAGGGGTCCTGGGCTCTAGG
1440
1489
Cd4
103290520
103290520
Riken
ri|4930440J04|PX00031E04|AK015349|1361
AK015349 AGATTAGCATGCTGCTCGAAGGCTCAGCAGCCAATAGTATCGGGACTCAG
437
486
Ppp1r2
102810300
102810300
RefSeq
XM_355038.1
XM_355038.1 38083244
CAGGAAGCCTCTGGGGTGGGAATGGGTATAAGAACCAAGGAGCAGAGACG
2628
2677
LOC381122
104850707
104850707
Riken
ri|C130038A22|PX00168H22|AK048157|3740
AK048157 CCAACTCAGCATTTGTTGGTGCACCACTACAGTGTGCATTGCACATAGAG
3681
3730
Nbea
102100279
102100279
RefSeq
XM_357368.1
XM_357368.1 38078125
TCTTCAGCTGACAGCAGCAAAGCCAGTTGATTGGAAGAAGGGGGAGAGCA
318
367
LOC384001
3360075
3360075
MEEBO
scl51299.12_342
NM_011972.1 6755273
GCGCACAGATAAGTCCAGAAAGCCAGGGAGTATGAGTCCCCAGGTCGCCA
2236
2285
Poli
4610433
4610433
MEEBO
scl16688.3.1_211
XM_129823.1 20848024
GAGTGAGACTGAGCCTCTCACTAACGGTTTGGGATATAAAATTCCTTGGA
1675
1724
4933402D24Rik
2230451
2230451
MEEBO
scl31044.8_330
NM_028729.1 27229170
TTGCAGTAGCCCAGAAAGTATAAATACATCGAAAGAGATGCCTTGCAGGC
2112
2161
4632434I11Rik
5360687
5360687
MEEBO
scl22986.2.29_3
NM_138679.2 46518492
GCACAAATTGTAGCCCTACTCGTAAAAGGTCTTCATCTGAGAGTACTTCT
4158
4207
Ash1l
450537
450537
MEEBO
scl24344.15.1_2
NM_029572.1 19072791
GGATCGAGATGAGCTGTAAAAACTCAAGAATACTGCAAGCCTTTCCACAC
20
69
Txndc4
5860368
5860368
MEEBO
scl0018044.2_32
NM_010913.1 6754847
GAATCCTTATATTGCCTGAAGAAGCACTGTTGAGCTAGCTGTCTTGGCTG
2135
2184
Nfya
46133 5897 Kbytes .Supplementary data files not provided
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