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Platform GPL4032 Query DataSets for GPL4032
Status Public on Jul 25, 2006
Title [Maize] Affymetrix Maize Genome Array
Technology type in situ oligonucleotide
Distribution commercial
Organism Zea mays
Manufacturer Affymetrix
Manufacture protocol see manufacturer's web site
 
Description Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

The GeneChip Maize Genome Array provides comprehensive coverage of over 100 cultivars present in NCBI's UniGene data set, including the most highly represented strains: B73, Ohio43, W22, W23, W64A, and Black Mexican Sweet.
The Maize Genome Array has 17,555 probe sets to interrogate approximately 14,850 Zea mays transcripts, which represent 13,339 genes (12,113 of which are represented in distinct UniGene clusters).
The sequence information for this array was selected from NCBI's GenBank® (up to September 29, 2004) and Zea mays UniGene Build 42 (July 23, 2004) databases. Probe sets on the array include 15 oligonucleotide pairs to detect each transcript, for added robustness and to facilitate detection of polymorphisms.
 
Web link http://www.affymetrix.com/support/technical/byproduct.affx?product=maize
http://www.affymetrix.com/analysis/index.affx
Submission date Jul 24, 2006
Last update date Jun 03, 2009
Organization Affymetrix, Inc.
E-mail geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (685) GSM162264, GSM162265, GSM162266, GSM162267, GSM202277, GSM202278 
Series (55)
GSE7030 Phenotypic and molecular characterisation of a novel Bt2 allele in maize
GSE8174 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Seedling data
GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Data table header descriptions
ID Affymetrix Probe Set ID
GB_LIST GenBank Accession Number
Species Scientific Name The genus and species of the organism represented by the probe set.
Annotation Date The date that the annotations for this probe array were last updated. It will generally be earlier than the date when the annotations were posted on the Affymetrix web site.
Sequence Type Indicates whether the sequence is an Exemplar, Consensus or Control sequence. An Exemplar is a single nucleotide sequence taken directly from a public database. This sequence could be an mRNA or EST. A Consensus sequence, is a nucleotide sequence assembled by Affymetrix, based on one or more sequence taken from a public database.
Representative Public ID The accession number of a representative sequence. Note that for consensus-based probe sets, the representative sequence is only one of several sequences (sequence sub-clusters) used to build the consensus sequence and it is not directly used to derive the probe sequences. The representative sequence is chosen during array design as a sequence that is best associated with the transcribed region being interrogated by the probe set. Refer to the "Sequence Source" field to determine the database used.
Gene Title Title of Gene represented by the probe set.
Gene Symbol A gene symbol, when one is available (from UniGene).
ENTREZ_GENE_ID Entrez Gene Database UID
Gene Ontology Biological Process Gene Ontology Consortium Biological Process derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Cellular Component Gene Ontology Consortium Cellular Component derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Molecular Function Gene Ontology Consortium Molecular Function derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
SPOT_ID Sequence Type: Indicates whether the sequence is an Exemplar, Consensus or Control sequence. An Exemplar is a single nucleotide sequence taken directly from a public database. This sequence could be an mRNA or EST. A Consensus sequence, is a nucleotide sequence assembled by Affymetrix, based on one or more sequence taken from a public database.

Data table
ID GB_LIST Species Scientific Name Annotation Date Sequence Type Representative Public ID Gene Title Gene Symbol ENTREZ_GENE_ID Gene Ontology Biological Process Gene Ontology Cellular Component Gene Ontology Molecular Function SPOT_ID
AFFX-BioB-3_at Zea mays Jul 12, 2006 Consensus sequence AFFX-BioB-3 9102 // biotin biosynthesis // inferred from electronic annotation /// 8152 // metabolism // inferred from electronic annotation /// 9058 // biosynthesis // inferred from electronic annotation /// 9236 // cobalamin biosynthesis // inferred from electronic annotation 4015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 8483 // transaminase activity // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 30170 // pyridoxal phosphate binding // inferred from electronic annotation /// 3824 // catalytic activity // inferred from electronic annotation /// 4076 // biotin synthase activity // inferred from electronic annotation /// 5506 // iron ion binding // inferred from electronic annotation /// 46872 // metal ion binding // inferred from electronic annotation /// 51536 // iron-sulfur cluster binding // inferred from electronic annotation /// 51537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 51539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation /// 8710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 16769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 8168 // methyltransferase activity // inferred from electronic annotation /// 8757 // S-adenosylmethionine-dependent methyltransferase activity // inferred from electronic annotation /// 166 // nucleotide binding // inferred from electronic annotation /// 287 // magnesium ion binding // inferred from electronic annotation /// 4141 // dethiobiotin synthase activity // inferred from electronic annotation /// 5524 // ATP binding // inferred from electronic annotation /// 16874 // ligase activity // inferred from electronic annotation /// 42242 // cobyrinic acid a,c-diamide synthase activity // inferred from electronic annotation -- Control sequence
AFFX-BioB-5_at Zea mays Jul 12, 2006 Consensus sequence AFFX-BioB-5 9102 // biotin biosynthesis // inferred from electronic annotation /// 8152 // metabolism // inferred from electronic annotation /// 9058 // biosynthesis // inferred from electronic annotation /// 9236 // cobalamin biosynthesis // inferred from electronic annotation 4015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 8483 // transaminase activity // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 30170 // pyridoxal phosphate binding // inferred from electronic annotation /// 3824 // catalytic activity // inferred from electronic annotation /// 4076 // biotin synthase activity // inferred from electronic annotation /// 5506 // iron ion binding // inferred from electronic annotation /// 46872 // metal ion binding // inferred from electronic annotation /// 51536 // iron-sulfur cluster binding // inferred from electronic annotation /// 51537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 51539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation /// 8710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 16769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 8168 // methyltransferase activity // inferred from electronic annotation /// 8757 // S-adenosylmethionine-dependent methyltransferase activity // inferred from electronic annotation /// 166 // nucleotide binding // inferred from electronic annotation /// 287 // magnesium ion binding // inferred from electronic annotation /// 4141 // dethiobiotin synthase activity // inferred from electronic annotation /// 5524 // ATP binding // inferred from electronic annotation /// 16874 // ligase activity // inferred from electronic annotation /// 42242 // cobyrinic acid a,c-diamide synthase activity // inferred from electronic annotation -- Control sequence
AFFX-BioB-M_at Zea mays Jul 12, 2006 Consensus sequence AFFX-BioB-M 9102 // biotin biosynthesis // inferred from electronic annotation /// 8152 // metabolism // inferred from electronic annotation /// 9058 // biosynthesis // inferred from electronic annotation /// 9236 // cobalamin biosynthesis // inferred from electronic annotation 4015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 8483 // transaminase activity // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 30170 // pyridoxal phosphate binding // inferred from electronic annotation /// 3824 // catalytic activity // inferred from electronic annotation /// 4076 // biotin synthase activity // inferred from electronic annotation /// 5506 // iron ion binding // inferred from electronic annotation /// 46872 // metal ion binding // inferred from electronic annotation /// 51536 // iron-sulfur cluster binding // inferred from electronic annotation /// 51537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 51539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation /// 8710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 16769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 8168 // methyltransferase activity // inferred from electronic annotation /// 8757 // S-adenosylmethionine-dependent methyltransferase activity // inferred from electronic annotation /// 166 // nucleotide binding // inferred from electronic annotation /// 287 // magnesium ion binding // inferred from electronic annotation /// 4141 // dethiobiotin synthase activity // inferred from electronic annotation /// 5524 // ATP binding // inferred from electronic annotation /// 16874 // ligase activity // inferred from electronic annotation /// 42242 // cobyrinic acid a,c-diamide synthase activity // inferred from electronic annotation -- Control sequence
AFFX-BioC-3_at Zea mays Jul 12, 2006 Consensus sequence AFFX-BioC-3 9102 // biotin biosynthesis // inferred from electronic annotation /// 8152 // metabolism // inferred from electronic annotation /// 9058 // biosynthesis // inferred from electronic annotation /// 9236 // cobalamin biosynthesis // inferred from electronic annotation 4015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 8483 // transaminase activity // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 30170 // pyridoxal phosphate binding // inferred from electronic annotation /// 3824 // catalytic activity // inferred from electronic annotation /// 4076 // biotin synthase activity // inferred from electronic annotation /// 5506 // iron ion binding // inferred from electronic annotation /// 46872 // metal ion binding // inferred from electronic annotation /// 51536 // iron-sulfur cluster binding // inferred from electronic annotation /// 51537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 51539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation /// 8710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 16769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 8168 // methyltransferase activity // inferred from electronic annotation /// 8757 // S-adenosylmethionine-dependent methyltransferase activity // inferred from electronic annotation /// 166 // nucleotide binding // inferred from electronic annotation /// 287 // magnesium ion binding // inferred from electronic annotation /// 4141 // dethiobiotin synthase activity // inferred from electronic annotation /// 5524 // ATP binding // inferred from electronic annotation /// 16874 // ligase activity // inferred from electronic annotation /// 42242 // cobyrinic acid a,c-diamide synthase activity // inferred from electronic annotation -- Control sequence
AFFX-BioC-5_at Zea mays Jul 12, 2006 Consensus sequence AFFX-BioC-5 9102 // biotin biosynthesis // inferred from electronic annotation /// 8152 // metabolism // inferred from electronic annotation /// 9058 // biosynthesis // inferred from electronic annotation /// 9236 // cobalamin biosynthesis // inferred from electronic annotation 4015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 8483 // transaminase activity // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 30170 // pyridoxal phosphate binding // inferred from electronic annotation /// 3824 // catalytic activity // inferred from electronic annotation /// 4076 // biotin synthase activity // inferred from electronic annotation /// 5506 // iron ion binding // inferred from electronic annotation /// 46872 // metal ion binding // inferred from electronic annotation /// 51536 // iron-sulfur cluster binding // inferred from electronic annotation /// 51537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 51539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation /// 8710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 16769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 8168 // methyltransferase activity // inferred from electronic annotation /// 8757 // S-adenosylmethionine-dependent methyltransferase activity // inferred from electronic annotation /// 166 // nucleotide binding // inferred from electronic annotation /// 287 // magnesium ion binding // inferred from electronic annotation /// 4141 // dethiobiotin synthase activity // inferred from electronic annotation /// 5524 // ATP binding // inferred from electronic annotation /// 16874 // ligase activity // inferred from electronic annotation /// 42242 // cobyrinic acid a,c-diamide synthase activity // inferred from electronic annotation -- Control sequence
AFFX-BioDn-3_at Zea mays Jul 12, 2006 Consensus sequence AFFX-BioDn-3 9102 // biotin biosynthesis // inferred from electronic annotation /// 8152 // metabolism // inferred from electronic annotation /// 9058 // biosynthesis // inferred from electronic annotation /// 9236 // cobalamin biosynthesis // inferred from electronic annotation 4015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 8483 // transaminase activity // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 30170 // pyridoxal phosphate binding // inferred from electronic annotation /// 3824 // catalytic activity // inferred from electronic annotation /// 4076 // biotin synthase activity // inferred from electronic annotation /// 5506 // iron ion binding // inferred from electronic annotation /// 46872 // metal ion binding // inferred from electronic annotation /// 51536 // iron-sulfur cluster binding // inferred from electronic annotation /// 51537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 51539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation /// 8710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 16769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 8168 // methyltransferase activity // inferred from electronic annotation /// 8757 // S-adenosylmethionine-dependent methyltransferase activity // inferred from electronic annotation /// 166 // nucleotide binding // inferred from electronic annotation /// 287 // magnesium ion binding // inferred from electronic annotation /// 4141 // dethiobiotin synthase activity // inferred from electronic annotation /// 5524 // ATP binding // inferred from electronic annotation /// 16874 // ligase activity // inferred from electronic annotation /// 42242 // cobyrinic acid a,c-diamide synthase activity // inferred from electronic annotation -- Control sequence
AFFX-BioDn-5_at Zea mays Jul 12, 2006 Consensus sequence AFFX-BioDn-5 9102 // biotin biosynthesis // inferred from electronic annotation /// 8152 // metabolism // inferred from electronic annotation /// 9058 // biosynthesis // inferred from electronic annotation /// 9236 // cobalamin biosynthesis // inferred from electronic annotation 4015 // adenosylmethionine-8-amino-7-oxononanoate transaminase activity // inferred from electronic annotation /// 8483 // transaminase activity // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 30170 // pyridoxal phosphate binding // inferred from electronic annotation /// 3824 // catalytic activity // inferred from electronic annotation /// 4076 // biotin synthase activity // inferred from electronic annotation /// 5506 // iron ion binding // inferred from electronic annotation /// 46872 // metal ion binding // inferred from electronic annotation /// 51536 // iron-sulfur cluster binding // inferred from electronic annotation /// 51537 // 2 iron, 2 sulfur cluster binding // inferred from electronic annotation /// 51539 // 4 iron, 4 sulfur cluster binding // inferred from electronic annotation /// 8710 // 8-amino-7-oxononanoate synthase activity // inferred from electronic annotation /// 16769 // transferase activity, transferring nitrogenous groups // inferred from electronic annotation /// 8168 // methyltransferase activity // inferred from electronic annotation /// 8757 // S-adenosylmethionine-dependent methyltransferase activity // inferred from electronic annotation /// 166 // nucleotide binding // inferred from electronic annotation /// 287 // magnesium ion binding // inferred from electronic annotation /// 4141 // dethiobiotin synthase activity // inferred from electronic annotation /// 5524 // ATP binding // inferred from electronic annotation /// 16874 // ligase activity // inferred from electronic annotation /// 42242 // cobyrinic acid a,c-diamide synthase activity // inferred from electronic annotation -- Control sequence
AFFX-CreX-3_at Zea mays Jul 12, 2006 Consensus sequence AFFX-CreX-3 6310 // DNA recombination // inferred from electronic annotation /// 6313 // DNA transposition // inferred from electronic annotation /// 15074 // DNA integration // inferred from electronic annotation 3677 // DNA binding // inferred from electronic annotation -- Control sequence
AFFX-CreX-5_at Zea mays Jul 12, 2006 Consensus sequence AFFX-CreX-5 6310 // DNA recombination // inferred from electronic annotation /// 6313 // DNA transposition // inferred from electronic annotation /// 15074 // DNA integration // inferred from electronic annotation 3677 // DNA binding // inferred from electronic annotation -- Control sequence
AFFX-DapX-3_at Zea mays Jul 12, 2006 Consensus sequence AFFX-DapX-3 6350 // transcription // inferred from electronic annotation /// 6355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 6464 // protein modification // inferred from electronic annotation /// 8652 // amino acid biosynthesis // inferred from electronic annotation /// 9085 // lysine biosynthesis // inferred from electronic annotation /// 9089 // lysine biosynthesis via diaminopimelate // inferred from electronic annotation /// 19877 // diaminopimelate biosynthesis // inferred from electronic annotation /// 1680 // tRNA 3'-terminal CCA addition // inferred from electronic annotation /// 6396 // RNA processing // inferred from electronic annotation /// 8033 // tRNA processing // inferred from electronic annotation /// 42245 // RNA repair // inferred from electronic annotation /// 19242 // methylglyoxal biosynthesis // inferred from electronic annotation /// 9058 // biosynthesis // inferred from electronic annotation 5737 // cytoplasm // inferred from electronic annotation /// 16020 // membrane // inferred from electronic annotation /// 16021 // integral to membrane // inferred from electronic annotation 3677 // DNA binding // inferred from electronic annotation /// 3824 // catalytic activity // inferred from electronic annotation /// 4077 // biotin-[acetyl-CoA-carboxylase] ligase activity // inferred from electronic annotation /// 16564 // transcriptional repressor activity // inferred from electronic annotation /// 16874 // ligase activity // inferred from electronic annotation /// 8839 // dihydrodipicolinate reductase activity // inferred from electronic annotation /// 16491 // oxidoreductase activity // inferred from electronic annotation /// 49 // tRNA binding // inferred from electronic annotation /// 166 // nucleotide binding // inferred from electronic annotation /// 287 // magnesium ion binding // inferred from electronic annotation /// 3723 // RNA binding // inferred from electronic annotation /// 4810 // tRNA adenylyltransferase activity // inferred from electronic annotation /// 5524 // ATP binding // inferred from electronic annotation /// 16437 // tRNA cytidylyltransferase activity // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 16779 // nucleotidyltransferase activity // inferred from electronic annotation /// 46872 // metal ion binding // inferred from electronic annotation /// 8929 // methylglyoxal synthase activity // inferred from electronic annotation /// 16829 // lyase activity // inferred from electronic annotation /// 16757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation -- Control sequence
AFFX-DapX-5_at Zea mays Jul 12, 2006 Consensus sequence AFFX-DapX-5 6350 // transcription // inferred from electronic annotation /// 6355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 6464 // protein modification // inferred from electronic annotation /// 8652 // amino acid biosynthesis // inferred from electronic annotation /// 9085 // lysine biosynthesis // inferred from electronic annotation /// 9089 // lysine biosynthesis via diaminopimelate // inferred from electronic annotation /// 19877 // diaminopimelate biosynthesis // inferred from electronic annotation /// 1680 // tRNA 3'-terminal CCA addition // inferred from electronic annotation /// 6396 // RNA processing // inferred from electronic annotation /// 8033 // tRNA processing // inferred from electronic annotation /// 42245 // RNA repair // inferred from electronic annotation /// 19242 // methylglyoxal biosynthesis // inferred from electronic annotation /// 9058 // biosynthesis // inferred from electronic annotation 5737 // cytoplasm // inferred from electronic annotation /// 16020 // membrane // inferred from electronic annotation /// 16021 // integral to membrane // inferred from electronic annotation 3677 // DNA binding // inferred from electronic annotation /// 3824 // catalytic activity // inferred from electronic annotation /// 4077 // biotin-[acetyl-CoA-carboxylase] ligase activity // inferred from electronic annotation /// 16564 // transcriptional repressor activity // inferred from electronic annotation /// 16874 // ligase activity // inferred from electronic annotation /// 8839 // dihydrodipicolinate reductase activity // inferred from electronic annotation /// 16491 // oxidoreductase activity // inferred from electronic annotation /// 49 // tRNA binding // inferred from electronic annotation /// 166 // nucleotide binding // inferred from electronic annotation /// 287 // magnesium ion binding // inferred from electronic annotation /// 3723 // RNA binding // inferred from electronic annotation /// 4810 // tRNA adenylyltransferase activity // inferred from electronic annotation /// 5524 // ATP binding // inferred from electronic annotation /// 16437 // tRNA cytidylyltransferase activity // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 16779 // nucleotidyltransferase activity // inferred from electronic annotation /// 46872 // metal ion binding // inferred from electronic annotation /// 8929 // methylglyoxal synthase activity // inferred from electronic annotation /// 16829 // lyase activity // inferred from electronic annotation /// 16757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation -- Control sequence
AFFX-DapX-M_at Zea mays Jul 12, 2006 Consensus sequence AFFX-DapX-M 6350 // transcription // inferred from electronic annotation /// 6355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 6464 // protein modification // inferred from electronic annotation /// 8652 // amino acid biosynthesis // inferred from electronic annotation /// 9085 // lysine biosynthesis // inferred from electronic annotation /// 9089 // lysine biosynthesis via diaminopimelate // inferred from electronic annotation /// 19877 // diaminopimelate biosynthesis // inferred from electronic annotation /// 1680 // tRNA 3'-terminal CCA addition // inferred from electronic annotation /// 6396 // RNA processing // inferred from electronic annotation /// 8033 // tRNA processing // inferred from electronic annotation /// 42245 // RNA repair // inferred from electronic annotation /// 19242 // methylglyoxal biosynthesis // inferred from electronic annotation /// 9058 // biosynthesis // inferred from electronic annotation 5737 // cytoplasm // inferred from electronic annotation /// 16020 // membrane // inferred from electronic annotation /// 16021 // integral to membrane // inferred from electronic annotation 3677 // DNA binding // inferred from electronic annotation /// 3824 // catalytic activity // inferred from electronic annotation /// 4077 // biotin-[acetyl-CoA-carboxylase] ligase activity // inferred from electronic annotation /// 16564 // transcriptional repressor activity // inferred from electronic annotation /// 16874 // ligase activity // inferred from electronic annotation /// 8839 // dihydrodipicolinate reductase activity // inferred from electronic annotation /// 16491 // oxidoreductase activity // inferred from electronic annotation /// 49 // tRNA binding // inferred from electronic annotation /// 166 // nucleotide binding // inferred from electronic annotation /// 287 // magnesium ion binding // inferred from electronic annotation /// 3723 // RNA binding // inferred from electronic annotation /// 4810 // tRNA adenylyltransferase activity // inferred from electronic annotation /// 5524 // ATP binding // inferred from electronic annotation /// 16437 // tRNA cytidylyltransferase activity // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 16779 // nucleotidyltransferase activity // inferred from electronic annotation /// 46872 // metal ion binding // inferred from electronic annotation /// 8929 // methylglyoxal synthase activity // inferred from electronic annotation /// 16829 // lyase activity // inferred from electronic annotation /// 16757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation -- Control sequence
AFFX-LysX-3_at Zea mays Jul 12, 2006 Consensus sequence AFFX-LysX-3 8652 // amino acid biosynthesis // inferred from electronic annotation /// 9085 // lysine biosynthesis // inferred from electronic annotation /// 9089 // lysine biosynthesis via diaminopimelate // inferred from electronic annotation 3824 // catalytic activity // inferred from electronic annotation /// 8836 // diaminopimelate decarboxylase activity // inferred from electronic annotation /// 16829 // lyase activity // inferred from electronic annotation /// 16831 // carboxy-lyase activity // inferred from electronic annotation -- Control sequence
AFFX-LysX-5_at Zea mays Jul 12, 2006 Consensus sequence AFFX-LysX-5 8652 // amino acid biosynthesis // inferred from electronic annotation /// 9085 // lysine biosynthesis // inferred from electronic annotation /// 9089 // lysine biosynthesis via diaminopimelate // inferred from electronic annotation 3824 // catalytic activity // inferred from electronic annotation /// 8836 // diaminopimelate decarboxylase activity // inferred from electronic annotation /// 16829 // lyase activity // inferred from electronic annotation /// 16831 // carboxy-lyase activity // inferred from electronic annotation -- Control sequence
AFFX-LysX-M_at Zea mays Jul 12, 2006 Consensus sequence AFFX-LysX-M 8652 // amino acid biosynthesis // inferred from electronic annotation /// 9085 // lysine biosynthesis // inferred from electronic annotation /// 9089 // lysine biosynthesis via diaminopimelate // inferred from electronic annotation 3824 // catalytic activity // inferred from electronic annotation /// 8836 // diaminopimelate decarboxylase activity // inferred from electronic annotation /// 16829 // lyase activity // inferred from electronic annotation /// 16831 // carboxy-lyase activity // inferred from electronic annotation -- Control sequence
AFFX-PheX-3_at Zea mays Jul 12, 2006 Consensus sequence AFFX-PheX-3 30435 // sporulation // inferred from electronic annotation /// 50896 // response to stimulus // inferred from electronic annotation /// 8152 // metabolism // inferred from electronic annotation /// 8652 // amino acid biosynthesis // inferred from electronic annotation /// 9073 // aromatic amino acid family biosynthesis // inferred from electronic annotation /// 9094 // L-phenylalanine biosynthesis // inferred from electronic annotation 5622 // intracellular // inferred from electronic annotation 16301 // kinase activity // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 166 // nucleotide binding // inferred from electronic annotation /// 5525 // GTP binding // inferred from electronic annotation /// 4664 // prephenate dehydratase activity // inferred from electronic annotation /// 16597 // amino acid binding // inferred from electronic annotation /// 16829 // lyase activity // inferred from electronic annotation -- Control sequence
AFFX-PheX-5_at Zea mays Jul 12, 2006 Consensus sequence AFFX-PheX-5 30435 // sporulation // inferred from electronic annotation /// 50896 // response to stimulus // inferred from electronic annotation /// 8152 // metabolism // inferred from electronic annotation /// 8652 // amino acid biosynthesis // inferred from electronic annotation /// 9073 // aromatic amino acid family biosynthesis // inferred from electronic annotation /// 9094 // L-phenylalanine biosynthesis // inferred from electronic annotation 5622 // intracellular // inferred from electronic annotation 16301 // kinase activity // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 166 // nucleotide binding // inferred from electronic annotation /// 5525 // GTP binding // inferred from electronic annotation /// 4664 // prephenate dehydratase activity // inferred from electronic annotation /// 16597 // amino acid binding // inferred from electronic annotation /// 16829 // lyase activity // inferred from electronic annotation -- Control sequence
AFFX-PheX-M_at Zea mays Jul 12, 2006 Consensus sequence AFFX-PheX-M 30435 // sporulation // inferred from electronic annotation /// 50896 // response to stimulus // inferred from electronic annotation /// 8152 // metabolism // inferred from electronic annotation /// 8652 // amino acid biosynthesis // inferred from electronic annotation /// 9073 // aromatic amino acid family biosynthesis // inferred from electronic annotation /// 9094 // L-phenylalanine biosynthesis // inferred from electronic annotation 5622 // intracellular // inferred from electronic annotation 16301 // kinase activity // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 166 // nucleotide binding // inferred from electronic annotation /// 5525 // GTP binding // inferred from electronic annotation /// 4664 // prephenate dehydratase activity // inferred from electronic annotation /// 16597 // amino acid binding // inferred from electronic annotation /// 16829 // lyase activity // inferred from electronic annotation -- Control sequence
AFFX-r2-Bs-dap-3_at Zea mays Jul 12, 2006 Consensus sequence AFFX-r2-Bs-dap-3 6350 // transcription // inferred from electronic annotation /// 6355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 6464 // protein modification // inferred from electronic annotation /// 8652 // amino acid biosynthesis // inferred from electronic annotation /// 9085 // lysine biosynthesis // inferred from electronic annotation /// 9089 // lysine biosynthesis via diaminopimelate // inferred from electronic annotation /// 19877 // diaminopimelate biosynthesis // inferred from electronic annotation /// 1680 // tRNA 3'-terminal CCA addition // inferred from electronic annotation /// 6396 // RNA processing // inferred from electronic annotation /// 8033 // tRNA processing // inferred from electronic annotation /// 42245 // RNA repair // inferred from electronic annotation /// 19242 // methylglyoxal biosynthesis // inferred from electronic annotation /// 9058 // biosynthesis // inferred from electronic annotation 5737 // cytoplasm // inferred from electronic annotation /// 16020 // membrane // inferred from electronic annotation /// 16021 // integral to membrane // inferred from electronic annotation 3677 // DNA binding // inferred from electronic annotation /// 3824 // catalytic activity // inferred from electronic annotation /// 4077 // biotin-[acetyl-CoA-carboxylase] ligase activity // inferred from electronic annotation /// 16564 // transcriptional repressor activity // inferred from electronic annotation /// 16874 // ligase activity // inferred from electronic annotation /// 8839 // dihydrodipicolinate reductase activity // inferred from electronic annotation /// 16491 // oxidoreductase activity // inferred from electronic annotation /// 49 // tRNA binding // inferred from electronic annotation /// 166 // nucleotide binding // inferred from electronic annotation /// 287 // magnesium ion binding // inferred from electronic annotation /// 3723 // RNA binding // inferred from electronic annotation /// 4810 // tRNA adenylyltransferase activity // inferred from electronic annotation /// 5524 // ATP binding // inferred from electronic annotation /// 16437 // tRNA cytidylyltransferase activity // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 16779 // nucleotidyltransferase activity // inferred from electronic annotation /// 46872 // metal ion binding // inferred from electronic annotation /// 8929 // methylglyoxal synthase activity // inferred from electronic annotation /// 16829 // lyase activity // inferred from electronic annotation /// 16757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation -- Control sequence
AFFX-r2-Bs-dap-5_at Zea mays Jul 12, 2006 Consensus sequence AFFX-r2-Bs-dap-5 6350 // transcription // inferred from electronic annotation /// 6355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 6464 // protein modification // inferred from electronic annotation /// 8652 // amino acid biosynthesis // inferred from electronic annotation /// 9085 // lysine biosynthesis // inferred from electronic annotation /// 9089 // lysine biosynthesis via diaminopimelate // inferred from electronic annotation /// 19877 // diaminopimelate biosynthesis // inferred from electronic annotation /// 1680 // tRNA 3'-terminal CCA addition // inferred from electronic annotation /// 6396 // RNA processing // inferred from electronic annotation /// 8033 // tRNA processing // inferred from electronic annotation /// 42245 // RNA repair // inferred from electronic annotation /// 19242 // methylglyoxal biosynthesis // inferred from electronic annotation /// 9058 // biosynthesis // inferred from electronic annotation 5737 // cytoplasm // inferred from electronic annotation /// 16020 // membrane // inferred from electronic annotation /// 16021 // integral to membrane // inferred from electronic annotation 3677 // DNA binding // inferred from electronic annotation /// 3824 // catalytic activity // inferred from electronic annotation /// 4077 // biotin-[acetyl-CoA-carboxylase] ligase activity // inferred from electronic annotation /// 16564 // transcriptional repressor activity // inferred from electronic annotation /// 16874 // ligase activity // inferred from electronic annotation /// 8839 // dihydrodipicolinate reductase activity // inferred from electronic annotation /// 16491 // oxidoreductase activity // inferred from electronic annotation /// 49 // tRNA binding // inferred from electronic annotation /// 166 // nucleotide binding // inferred from electronic annotation /// 287 // magnesium ion binding // inferred from electronic annotation /// 3723 // RNA binding // inferred from electronic annotation /// 4810 // tRNA adenylyltransferase activity // inferred from electronic annotation /// 5524 // ATP binding // inferred from electronic annotation /// 16437 // tRNA cytidylyltransferase activity // inferred from electronic annotation /// 16740 // transferase activity // inferred from electronic annotation /// 16779 // nucleotidyltransferase activity // inferred from electronic annotation /// 46872 // metal ion binding // inferred from electronic annotation /// 8929 // methylglyoxal synthase activity // inferred from electronic annotation /// 16829 // lyase activity // inferred from electronic annotation /// 16757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation -- Control sequence

Total number of rows: 17734

Table truncated, full table size 2926 Kbytes.






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