GEO help: Mouse over screen elements for information.
Status
Public on Jul 03, 2006
Title
Su(Ste) tiling and microRNA array (#7)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Drosophila melanogaster Manufacturer
LC Sciences (Houston, TX, USA)
Manufacture protocol
MicroRNA probes were designed by LC Sciences (based on Sanger Institute miRBase repository sequences on August 2, 2005). LNA-modified RNA probes were synthesized in situ using photogenerated acid coupled with conventional DMT chemistry (LNA-modification ensures Tm-normalization). Synthesis was performed on a µParaflo microfluidic chip.http://www.lcsciences.com for additionnal details.
Catalog number
UM_060042
Contributor(s)
Vagin VV , Sigova A , Li C , Seitz H , Gvozdev V , Zamore PD Submission date
May 25, 2006
Last update date
Jul 03, 2006
Contact name
Hervé Seitz
Phone
(508)856 1220
Fax
(508)856 2003
URL
http://www.umassmed.edu/bmp/faculty/zamore.cfm?start=0& Organization name
University of Massachusetts Medical School
Department
Biochemistry and Molecular Pharmacology
Lab
870 P, Lazare Research Building
Street address
364 Plantation Street
City
Worcester
State/province
MA
ZIP/Postal code
01605-2324
Country
USA
Samples (1)
GSM111152 Series (1)
GSE4932 A small RNA mechanism distinct from the RNAi and microRNA pathways silences selfish genetic elements in Drosophila.
Data table header descriptions ID Probe_ID Name of the detected RNA
SEQUENCE Sequence of the detected RNA
Row Position on array (row)
Column Position on array (column)
SPOT_ID
Data table ID Probe_ID SEQUENCE Row Column SPOT_ID 1
ANTICopia 2211
UUCCGAAUGACAGUAGGAAAAUAAUACAAA
1
1
2
dme-miR-1
UGGAAUGUAAAGAAGUAUGGAG
1
2
3
snoRNA:U21
AUUGUGAUUAUUCAAGUUUAUUU
1
3
4
ANTISu(Ste 286
CACUUUAUUGCCUUUUUGGAAG
1
4
5
ANTISu(Ste 414
AAUCAUUUUUAUGUAAUUCUUU
1
5
6
ANTISu(Ste 542
AAAUAUUUUUUGAUAAUUUAAU
1
6
7
ANTISu(Ste 670
AGCAUACUUUCGUUAAUAGUGG
1
7
8
ANTISu(Ste 798
GAUAUAUGGUUGUUGCAAUUAA
1
8
9
ANTISu(Ste 926
CCAAAGAAUAUCAAAUACUCGG
1
9
10
ANTISu(Ste 1054
CAACCCACGGUAAGUAAUUCUC
1
10
11
ANTISu(Ste 1182
AACGGUGAAGAUCUACUGCCCA
1
11
12
ANTISu(Ste 1310
AGGUCGGAGCGUGGCGUGAAUG
1
12
13
ANTISu(Ste 1438
AGCCAGAUGGGCCUGGAGUACU
1
13
14
ANTISu(Ste 1566
UAAAAUCUUGAACCCAGAACAA
1
14
15
Su(Ste) 43
AUAGGAAAAACCUAGUUACUUA
1
15
16
ANTICopia 2216
AAAUUUUCCGAAUGACAGUAGGAAAAUAAU
1
16
17
Su(Ste) 171
GGUGGGCACGUGGCAGAGGAAC
1
17
18
Su(Ste) 299
GCCGUACCACUUUUUCUCAUCG
1
18
19
Su(Ste) 427
AGGCCCACUGGCAGGGUGUUCU
1
19
20
Su(Ste) 555
GGCAGCUGCGUUAAGAAGAUGU
1
20
3968 199 Kbytes .Supplementary data files not provided
