GEO Accession viewer

GSE227794	ETVs dictate hPSC differentiation by tuning biophysical properties
GSE229357	Effect of treatment with 5uM of the type I PRMT inhibitor MS023 dissolved in DMSO for 3 days and of a stably transduced PRMT1 specific dox-inducible knockdown over 4 days in ccRCC cell line models RCC243 and 786-0
GSE230939	Effect of NUTF2 overexpression on gene expression in MCF-7 cells
GSE232939	LINE1 and PRC2 control nucleolar organization and repression of the 8C-state in human ESCs
GSE233638	Discovery of Competent Chromatin Regions in Human Embryonic Stem Cells
GSE233655	Absolute transcription-start nucleotide m6Am stoichiometry quantification by CROWN-Seq
GSE243824	Mechanism for controlled assembly of transcriptional condensates by Aire [ChIP-seq]
GSE243825	Mechanism for controlled assembly of transcriptional condensates by Aire
GSE251892	Single-cell RNA-seq study of ascending somatosensory assembloids and human primary DRG
GSE255108	Targeting CDK7 function in the RNA Polymerase II transcription cycle in inflammatory arthritis
GSE255677	Reutilization of ancestral gill regulatory programs in outer ear evolution (human)
GSE261432	The impact of PCR duplication on RNAseq data generated using NovaSeq 6000, NovaSeq X, AVITI and G4 sequencers
GSE262442	Scaled and efficient derivation of loss-of-function alleles in risk genes for neurodevelopmental and psychiatric disorders in human iPSCs
GSE263271	Human iPS cell-derived respiratory organoids as a model for respiratory syncytial virus infection
GSE263289	LINE1 and PRC2 control nucleolar organization and repression of the 8C-state in human ESCs [ChIRP-seq,RSeT+DT H9]
GSE263862	The enhancer RNA, AANCR, regulates APOE expression in astrocytes and microglia
GSE267525	Mechanism for controlled assembly of transcriptional condensates by Aire [ATAC-seq]
GSE267530	Inflammatory mediators suppress FGFR2 expression in human keratinocytes to promote skin inflammation
GSE267825	Assessing the impact of GXYLT2 knockdown on the expression levels of genes associated with malignant characteristics, including proliferation, invasion, and stemness, in HGC-27 gastric cancer cells.
GSE267956	Novel mechanisms of MITF regulation identified in a mouse suppressor screen
GSE268627	A comparison of methylome data produced with tPBAT and sPBAT library preparation protocols.
GSE268671	KRAS Mutation Confers Lung Adenocarcinoma Platinum Resistance by Hijacking ALKBH5 Post-translational Modifications–mediated DNA Damage Response
GSE268871	Small Molecule-Catalyzed Deamination: Applications in Transcriptome-Wide Profiling of N6-Methyladenosine in RNA (human)
GSE269285	Macrophages show unprecedented anti-HIV activity in HIV-infected iHMD-NSG mice
GSE269418	Effect of the sGC activator BAY 60-2770 on human proximal tubular (HK-2) cells under hypoxia and after TGF-β1 treatment
GSE269485	Transcriptomics-informed pharmacology identifies epigenetic and cell cycle regulators as enhancers of AAV production
GSE270033	DNA 5-methylcytosine regulates genome-wide formation of G-quadruplex structures [ATAC-seq]
GSE270034	DNA 5-methylcytosine regulates genome-wide formation of G-quadruplex structures [WGBS]
GSE270035	DNA 5-methylcytosine regulates genome-wide formation of G-quadruplex structures [CUT&Tag]
GSE270275	Structure-guided development of high-performance antibodies targeting site-specific post-translational modifications
GSE270327	Splicing factor U2AF2 promotes inclusion of exons with poor nucleosome phasing
GSE270463	Molecular basis for human respiratory syncytial virus transcriptional regulator NS1 interactions with MED25
GSE270564	RNA sequencing in 22RV1 cells stably expressing shLuc, shIMPA1, shIMPDH2
GSE270565	Characterization of gene profile between ALDH high LNCaP cells and ALDH low LNCaP cells
GSE270784	ZIC2 and ZIC3 promote SWI/SNF recruitment to safeguard progression towards human primed pluripotency [ChIP-seq]
GSE270787	ZIC2 and ZIC3 promote SWI/SNF recruitment to safeguard progression towards human primed pluripotency
GSE270822	ZIC2 and ZIC3 promote SWI/SNF recruitment to safeguard progression towards human primed pluripotency [CUT&Tag]
GSE270948	ZIC2 and ZIC3 promote SWI/SNF recruitment to safeguard progression towards human primed pluripotency [ATAC-Seq]
GSE271090	Centralized control of dynamic gene regulatory circuits governs human T cell rest and activation
GSE271459	Transcription factor network dynamics during the commitment to oncogene-induced senescence [ATAC-Seq]
GSE271460	Transcription factor network dynamics during the commitment to oncogene-induced senescence [CUT&Tag]
GSE271461	Transcription factor network dynamics during the commitment to oncogene-induced senescence [RNA-Seq]
GSE271789	Single-Cell Analysis Reveals Novel Immune Perturbations in Fibrotic Hypersensitivity Pneumonitis
GSE271989	Hemoglobin-induced Transcriptomic Changes in Human Cerebral Arteries
GSE272312	Effect of abemaiclicb and deletion of TP53 on gene expression in MCF7 cells at different timepoints
GSE272385	Natural and non-natural cytokine receptors generate diverse cell states to enhance T cell therapy
GSE272695	Decidual natural killer cells promote extravillus trophoblast developmental pathways: evidence from trophoblast organoid co-cultures
GSE272812	Neuronal DNA repair reveals strategies to influence CRISPR editing outcomes
GSE272873	IGF2BP1 phosphorylation regulates ribonucleoprotein condensate formation by impairing low-affinity protein and RNA interactions (RIP-Seq)
GSE272874	IGF2BP1 phosphorylation regulates ribonucleoprotein condensate formation by impairing low-affinity protein and RNA interactions (RNA-Seq)
GSE272875	IGF2BP1 phosphorylation regulates ribonucleoprotein condensate formation by impairing low-affinity protein and RNA interactions
GSE273397	Single-cell RNA-seq of the human tonsil and blood lymphocytes
GSE273419	CyroSCAPE: Scalable Immune Profiling Using Cryopreserved Whole Blood for Multi-omic Single Cell and Functional Assays
GSE273692	Polo-like kinase inhibitors increase AAV production by halting cell cycle progression
GSE274083	Early-life thymectomy leads to an increase of granzyme-producing γδ T cells in children with congenital heart disease
GSE274466	Activation of STAT3-mediated ciliated cell survival protects against severe infection by respiratory syncytial virus
GSE274751	Method of moments approach for generalized differential gene expression analysis (Perturb-seq)
GSE274986	Neurodevelopmental hijacking of oligodendrocyte lineage programs drives glioblastoma infiltration [scMultiome]
GSE275071	Single cell RNAseq analysis of PBMCs isolated from healthy adults subjeccted to sleep restriction
GSE275159	Classification of pediatric soft and bone sarcomas using DNA methylation-based profiling
GSE275677	RUNX2 as a novel Biomarker for early identification of Patients Progressing to Advanced-Stage Mycosis Fungoides
GSE275778	AR coactivators, CBP/p300, are critical mediators of DNA repair in prostate cancer [RNA-seq: 22RV1]
GSE276055	CRISPRi with barcoded expression reporters dissects regulatory networks in human cells
GSE276066	Targeting the 3D genome by anthracyclines for chemotherapeutic effects
GSE276320	Chromodomain protein CDYL confers forebrain identity to human cortical organoids by inhibiting neuronatin [RNA-seq]
GSE276596	Attempts to create transgenic mice carrying the Q3925E mutation in RyR2 Ca2+ binding site
GSE276684	Deciphering shared molecular dysregulation across Parkinson's Disease variants using a multi-modal network-based data integration and analysis
GSE276934	Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis [Visium]
GSE276945	Image-based spatial transcriptomics identifies molecular niche dysregulation associated with distal lung remodeling in pulmonary fibrosis
GSE276947	Massively parallel reporter assay investigates shared genetic variants of eight psychiatric disorders
GSE277299	Androgen receptor inhibition increases MHC Class I expression and improves immune response in prostate cancer
GSE277567	Adipose-derived mesenchymal stem cells overexpressing thrombomodulin reduce thrombogenic risk and enhance therapeutic efficacy
GSE277609	Optimized Method to Generate Well-Characterized Macrophages from Induced Pluripotent Stem Cells
GSE277719	Genome-wide in vivo dynamics of cohesin-mediated loop extrusion and its role in transcription activation [Hi-C]
GSE277720	Genome-wide in vivo dynamics of cohesin-mediated loop extrusion and its role in transcription activation [ChIP-seq]
GSE277721	Genome-wide in vivo dynamics of cohesin-mediated loop extrusion and its role in transcription activation
GSE278191	High-resolution 3D genome structures via single-cell Micro-C uncovers cohesin-mediated enhancer-promoter loops [1000U]
GSE278572	Centralized control of dynamic gene regulatory circuits governs human T cell rest and activation [Perturb-CITE-seq]
GSE278880	Isocitrate Dehydrogenase 1 Primes Group-3 Medulloblastomas For Cuproptosis
GSE279023	Functional screen for mediators of onco-mRNA translation specificity [II]
GSE279116	Mapping and Quantification of Genome-wide DNA Damages by Catechol Estrogens Using Click probe-Seq and LC/MS2: Unraveling Endogenous Genotoxicity Beyond Receptor-mediated Signaling
GSE279423	Single-nucleotide-resolution genomic maps of O6-methylguanine from the glioblastoma drug temozolomide
GSE279479	High-resolution 3D genome structures via single-cell Micro-C uncovers cohesin-mediated enhancer-promoter loops [600U]
GSE279583	High-resolution 3D genome structures via single-cell Micro-C uncovers cohesin-mediated enhancer-promoter loops [800U]
GSE279732	High-resolution 3D genome structures via single-cell Micro-C uncovers cohesin-mediated enhancer-promoter loops [200U]
GSE279958	Single cell RNA seq of micropatterns derived from Human ESC Micropatterns
GSE280482	High-resolution 3D genome structures via single-cell Micro-C uncovers cohesin-mediated enhancer-promoter loops (SDS test)
GSE280508	Evolutionarily guided transcription factor design programs novel T cell states [bulkRNA-seq]
GSE280509	Evolutionarily guided transcription factor design programs novel T cell states [scRNA-seq, MULTI-seq]
GSE280812	Gene expression profilling of day 30 cerebral organoids at the single cell level
GSE281096	Single-cell and spatial transcriptomics identify COL6A3 as a prognostic biomarker in undifferentiated pleomorphic sarcoma [scRNA-Seq]
GSE281150	High-resolution 3D genome structures via single-cell Micro-C uncovers cohesin-mediated enhancer-promoter loops
GSE281164	TFE3 fusion oncoprotein condensates drive epigenetic reprogramming and cancer progression [ATAC-Seq]
GSE281165	TFE3 fusion oncoprotein condensates drive epigenetic reprogramming and cancer progression [CUT&RUN]
GSE281252	Monitoring ORF10's Impact on Host Transcriptome Using Doxycycline-Inducible A549 and 293T Cell Lines.
GSE281374	The EP4 antagonist vorbipiprant and an anti-PD-1 in MSS mCRC
GSE281529	Single-cell and spatial transcriptomics identify COL6A3 as a prognostic biomarker in undifferentiated pleomorphic sarcoma
GSE281893	SFPQ protects DNA repeat stability by recruiting histone H3.3 chaperon activity to R-loop structures [ChIP-seq]
GSE282191	Functional dissection of metabolic trait-associated variants in steady state and stimulated human skeletal muscle cells
GSE282362	Optimized Methods for scRNA-seq and snRNA-seq of Skeletal Muscle Stored in Nucleic Acid Stabilizing Preservative
GSE282364	Anti-leukemic effect of TGN-1062, a novel CDK7 inhibitor, on AML-leukemic stem cells by targeting RNA modification and Mitochondrial metabolism
GSE282399	The effects of AMPK activator A-769662 on the transcriptome of pathological phenotypes following mitochondrial DNA depletion
GSE282602	Gene expression proﬁling of MDA-MB-231 cells treated Compound 28, a CDK9 degrader
GSE282765	Eosinophils restrict CRC metastasis by inhibiting pro-tumorigenic Spp1+ macrophage differentiation.
GSE282850	Functional dissection of metabolic trait-associated variants in steady state and stimulated human skeletal muscle cells [RNA-Seq]
GSE283119	Linker histone H1-0 is a specific mediator of the ETV6::RUNX1 transcriptional landscape in preleukemia and B cell acute lymphoblastic leukemia
GSE283144	Multi-Omic Single-Cell Dissection of Leukemic T-Cell Lymphoma Following CAR T-Cell Therapy
GSE283210	Quantitative design of microRNA-responsive mRNA from expression data
GSE283444	Small molecule RNA therapeutics to target prostate cancer [DMS MaP-seq]
GSE283446	Small molecule RNA therapeutics to target prostate cancer [RNA-seq]
GSE283647	Metabolic Reprogramming into a Glycolysis Phenotype Induced by Extracellular Vesicles Derived from Prostate Cancer Cells
GSE284410	A comprehensive benchmark for multiple highly efficient base editors with maximal targeting scope
GSE285174	Actin polymerization by WASp limits nuclear envelope rupture and inflammation in macrophages I
GSE285196	Pathogenesis of Graves' Disease Using Single-Cell Sequencing with Thyroid Autoantigens Peptides Stimulation in B Cells
GSE285268	Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor [ChIP-Seq]
GSE285274	Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor [Hi-C]
GSE285277	Dose-dependent sensitivity of human 3D chromatin to a heart disease-linked transcription factor [RNA-Seq]
GSE285699	DNA topological regulation by topoisomerase IIβ-DNA-PK interaction is important for controlled hypoxia-inducible gene expression [TMP-seq]
GSE285881	The Role of BAZ2-dependent Chromatin Remodeling in Suppressing G4 DNA [HA] Structures and Associated Genomic Instability
GSE285882	The Role of BAZ2-dependent Chromatin Remodeling in Suppressing G4 DNA Structures and Associated Genomic Instability [G4]
GSE285943	A reference model for circulating hematopoietic stem cells with applications to diagnostics
GSE286227	Spatial transcriptomic profiling of the lung tissues from a patient with recurrent anti-synthetase syndrome associated interstitial lung disease after bilateral lung transplantation and one untreated patient
GSE286234	Bulk RNA-seq profiling of human head and neck squamous cell carcinoma (HNSCC) with primary tumors and metastatic lymph nodes
GSE287558	Study 3- RNA-seq of male KOLF2.2J hiPSC-derived cortical brain organoids homozygous null for six different transcription factors
GSE287691	Effects of exposure to the trichloroethylene metabolite S-(1,2-dichlorovinyl)-L-cysteine on HTR-8/SVneo differential gene expression under hypoxic vs. normoxic conditions (O2 < 2%)
GSE287792	PHLPP2 is a pseudophosphatase that lost activity in the metazoan ancestor
GSE287843	Study 4- RNA-seq of male KOLF2.2J hiPSC-derived cortical brain organoids and extra-embryonic lineages homozygous null for six different transcription factors
GSE287844	Study 5- RNA-seq of male KOLF2.2J hiPSC-derived cortical brain organoids and extra-embryonic lineages homozygous null for nine different transcription factors and one RNA splicing factor
GSE287845	Bulk RNA-seq study 4 and 5: 17 genes knocked out in extra-embryonic and cortical brain organoids
GSE288099	Restoring Mitochondrial Quantity and Quality to Reverse Warburg Effect and Drive Tumor Differentiation
GSE288286	Study 6- RNA-seq of female WIBJ2 hiPSC-derived cortical brain organoids and extra-embryonic lineages homozygous null for five different transcription factors
GSE288287	Study 7- RNA-seq of male KOLF2.2J hiPSC-derived differentiated cells for lines in which the original mutation to create null alleles was reverted back to wildtype
GSE288288	Study 1- RNA-seq of male KOLF2.2J hiPSC-derived trophoblast cell lines homozygous null for seven different transcription factors
GSE288289	Study 2- RNA-seq of male KOLF2.2J hiPSC-derived trophoblast cell lines homozygous null for seven different transcription factors
GSE288317	Study 1 and Study 2 - RNA-seq of male KOLF2.2J hiPSC-derived trophoblast cell lines homozygous null for 14 different transcription factors
GSE288398	Bulk RNA seq timecourse of KOLF2.2J hiPSC after Auxin-induced protein degradation of specific gene products
GSE288436	IL-7-mediated expansion of autologous lymphocytes increases CD8+ T Cell VLA-4 expression and accumulation within glioblastoma
GSE288562	Multi-Omics Analysis of the Immunological State at Baseline and Following SARS-CoV-2 mRNA Vaccination in Lung Transplant Recipients
GSE288796	IFNλ1 is a STING-dependent mediator of DNA damage and induces Immune activation in lung cancer
GSE288996	Simultaneous single cell CRISPR, RNA, and ATAC-seq enables multiomic CRISPR screens to identify gene regulatory relationships
GSE289053	The ALS-associated co-chaperone DNAJC7 mediates neuroprotection against proteotoxic stress by modulating HSF1 activity
GSE289235	A Massively Parallel CRISPR-Based Screening Platform for Modifiers of Neuronal Activity
GSE289713	Superior preclinical efficacy of co-treatment with BRG1/BRM and FLT3 inhibitor against AML cells with FLT3 mutations
GSE289738	Effect of interleukin-1beta on confluent human lymphatic endothelial cells
GSE290359	Differential Cellular Mechanisms Underlie Language and Executive Decline in Amyotrophic Lateral Sclerosis
GSE290535	RNA Transcripts Serve as a Template for Double-Strand Break Repair in Human Cells
GSE290596	Discovery of Competent Chromatin Regions in Human Embryonic Stem Cells [scRNA-seq]
GSE290724	Neurodevelopmental hijacking of oligodendrocyte lineage programs drives glioblastoma infiltration [Spatial transcriptomics]
GSE290725	Neurodevelopmental hijacking of oligodendrocyte lineage programs drives glioblastoma infiltration [methylation]
GSE291052	Characterization of human healthy i3 lower motor neurons exposed to CSF from ALS patients stratified by UNC13A and C9ORF72 genotype
GSE291410	Redox Regulation of Lung Endothelial PERK, Unfolded Protein Response (UPR) and Proliferation via NOX1: Targeted Inhibition as a Potential Therapy for PAH
GSE291564	Characterization of a gene expression biomarker predictive of hypoxia-inducible factor-1 modulation
GSE291960	Improved split prime editors enable efficient in vivo genome editing.
GSE292454	ATF4:p52 Complex Activates Oncogenic Enhancers in Multiple Myeloma via p300/CBP Recruitment to Regulate BACH1
GSE292617	CREsted: modeling genomic and synthetic cell type-specific enhancers across tissues and species
GSE292620	Genome-wide CRISPR Screen Identifies BUB1 Kinase as a Druggable Vulnerability in Malignant Pleural Mesothelioma
GSE292627	Stromal lipid species dictate melanoma metastasis and tropism [A375_RNA_seq]
GSE292628	Stromal lipid species dictate melanoma metastasis and tropism [MeWo_RNA_seq]
GSE293189	Histologic variants in bladder cancer share aggressive molecular features including a CA125+ cell state and targetable TM4SF1 expression
GSE293399	snATAC data analysis for Hidradentis Suppurativa patients' epidermis
GSE293633	AI-generated MLH1 small binder improves prime editing efficiency
GSE293692	Menin-MLL complex cooperates with NF-Y to promote HCC survival [CUT&RUN]
GSE293920	Programmable RNA acetylation with CRISPR-Cas13
GSE294544	Research on the effect of PRMT5 on the genomic binding sites of ΔNp63α and its impact on the global transcriptomic regulation in the human tongue squamous cell carcinoma cell line UM1.
GSE294754	MiNK-215: Allogeneic FAP-CAR-IL15 iNKT therapy remodels tumor stroma to enhance anti-tumor immunity
GSE294792	Nuclear 2′-O-methylation regulates RNA splicing through its binding protein FUBP1 (Nm-mut-seq)
GSE294793	Nuclear 2′-O-methylation regulates RNA splicing through its binding protein FUBP1 (CLIP-seq and PAR-CLIP)
GSE294883	Incomplete paralog compensation generates selective dependency on TRA2A in cancer
GSE295018	The effect of PTEN inhibitor on Periodontal ligament cells
GSE295024	Imlunestrant: A next-generation oral SERD overcomes ESR1 mutant resistance in estrogen receptor-positive breast cancer