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Platform GPL342 Query DataSets for GPL342
Status Public on Jun 23, 2003
Title [RAE230B] Affymetrix Rat Expression 230B Array
Technology type in situ oligonucleotide
Distribution commercial
Organism Rattus norvegicus
Manufacturer Affymetrix
Manufacture protocol see manufacturer's web site
 
Description Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

Array B of GeneChip Rat Expression Set 230
Has 15333 entries and was indexed 09-Apr-2003
Sequences used in the design of the array were selected from GenBank, dbEST, and RefSeq. Sequence clusters were created from Build 99 of UniGene (June 2002) and refined by analysis and comparison with a number of other publicly available databases including the Baylor College of Medicine Human Genome Sequencing Center's preliminary rat genome assembly (June 2002). In addition, sequences were analyzed for untrimmed low-quality sequence information, correct orientation, false clustering, alternative splicing and alternative polyadenylation.

 
Web link http://www.affymetrix.com/support/technical/byproduct.affx?product=rae230
http://www.affymetrix.com/analysis/index.affx
Submission date Jun 19, 2003
Last update date Jun 03, 2009
Organization Affymetrix, Inc.
E-mail geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (179) GSM12794, GSM12796, GSM12798, GSM12800, GSM12802, GSM12804 
Series (16)
GSE830 Rat germ cells
GSE1892 Gene Expression in Iron-Deficient Rat Duodenum
GSE2071 A comparison of forskolin-induced mRNA vs. an inactive control in the rat PC12 cell pheochromocytoma cell line.

Data table header descriptions
ID Affymetrix Probe Set ID
GB_ACC GenBank Accession Number
SPOT_ID identifies controls
Species Scientific Name The genus and species of the organism represented by the probe set.
Annotation Date The date that the annotations for this probe array were last updated. It will generally be earlier than the date when the annotations were posted on the Affymetrix web site.
Sequence Type
Sequence Source The database from which the sequence used to design this probe set was taken.
Target Description
Representative Public ID The accession number of a representative sequence. Note that for consensus-based probe sets, the representative sequence is only one of several sequences (sequence sub-clusters) used to build the consensus sequence and it is not directly used to derive the probe sequences. The representative sequence is chosen during array design as a sequence that is best associated with the transcribed region being interrogated by the probe set. Refer to the "Sequence Source" field to determine the database used.
Gene Title Title of Gene represented by the probe set.
Gene Symbol A gene symbol, when one is available (from UniGene).
ENTREZ_GENE_ID Entrez Gene Database UID
RefSeq Transcript ID References to multiple sequences in RefSeq. The field contains the ID and Description for each entry, and there can be multiple entries per ProbeSet.
Gene Ontology Biological Process Gene Ontology Consortium Biological Process derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Cellular Component Gene Ontology Consortium Cellular Component derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Molecular Function Gene Ontology Consortium Molecular Function derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".

Data table
ID GB_ACC SPOT_ID Species Scientific Name Annotation Date Sequence Type Sequence Source Target Description Representative Public ID Gene Title Gene Symbol ENTREZ_GENE_ID RefSeq Transcript ID Gene Ontology Biological Process Gene Ontology Cellular Component Gene Ontology Molecular Function
1367452_at NM_133594 Rattus norvegicus Mar 11, 2009 Consensus sequence GenBank gb:NM_133594.1 /DB_XREF=gi:19424297 /GEN=Smt3h2 /FEA=FLmRNA /CNT=51 /TID=Rn.5958.1 /TIER=FL+Stack /STK=35 /UG=Rn.5958 /DEF=Rattus norvegicus SMT3 suppressor of mif two 3 homolog 2 (yeast) (Smt3h2), mRNA. /PROD=SMT3 suppressor of mif two 3 homolog 2 (yeast) /FL=gb:NM_133594.1 gb:L79949.1 NM_133594 SMT3 suppressor of mif two 3 homolog 2 (S. cerevisiae) Sumo2 690244 NM_133594 /// XM_001073823 0006464 // protein modification process // inferred from electronic annotation /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0006879 // cellular iron ion homeostasis // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0008199 // ferric iron binding // inferred from electronic annotation /// 0016491 // oxidoreductase activity // inferred from electronic annotation /// 0046914 // transition metal ion binding // inferred from electronic annotation
1367453_at NM_053743 Rattus norvegicus Mar 11, 2009 Consensus sequence GenBank gb:NM_053743.1 /DB_XREF=gi:16758569 /GEN=Cdc37 /FEA=FLmRNA /CNT=31 /TID=Rn.17982.1 /TIER=FL+Stack /STK=25 /UG=Rn.17982 /LL=114562 /DEF=Rattus norvegicus CDC37 (cell division cycle 37, S. cerevisiae, homolog) (Cdc37), mRNA. /PROD=CDC37 (cell division cycle 37, S. cerevisiae,homolog) /FL=gb:D26564.1 gb:NM_053743.1 NM_053743 cell division cycle 37 homolog (S. cerevisiae) Cdc37 114562 NM_053743 /// XM_001077364 0051726 // regulation of cell cycle // inferred from expression pattern 0005737 // cytoplasm // inferred from electronic annotation /// 0005829 // cytosol // inferred from sequence or structural similarity 0051879 // Hsp90 protein binding // inferred from sequence or structural similarity
1367454_at NM_021765 Rattus norvegicus Mar 11, 2009 Consensus sequence GenBank gb:NM_021765.1 /DB_XREF=gi:11120715 /GEN=Copb /FEA=FLmRNA /CNT=22 /TID=Rn.37178.1 /TIER=FL+Stack /STK=17 /UG=Rn.37178 /LL=60384 /DEF=Rattus norvegicus beta prime COP (Copb), mRNA. /PROD=beta prime COP /FL=gb:NM_021765.1 gb:AF002705.1 NM_021765 coatomer protein complex, subunit beta 2 (beta prime) Copb2 60384 NM_021765 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // inferred from sequence or structural similarity /// 0006891 // intra-Golgi vesicle-mediated transport // inferred from sequence or structural similarity /// 0015031 // protein transport // inferred from electronic annotation /// 0016044 // membrane organization // inferred from sequence or structural similarity /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0048193 // Golgi vesicle transport // inferred from physical interaction /// 0048205 // COPI coating of Golgi vesicle // inferred from sequence or structural similarity 0000139 // Golgi membrane // inferred from direct assay /// 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0030117 // membrane coat // inferred from electronic annotation /// 0030126 // COPI vesicle coat // inferred from sequence or structural similarity /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005080 // protein kinase C binding // inferred from direct assay /// 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from sequence or structural similarity
1367455_at NM_053864 Rattus norvegicus Mar 11, 2009 Consensus sequence GenBank gb:NM_053864.1 /DB_XREF=gi:17865350 /GEN=Vcp /FEA=FLmRNA /CNT=53 /TID=Rn.3820.1 /TIER=FL+Stack /STK=16 /UG=Rn.3820 /LL=116643 /DEF=Rattus norvegicus valosin-containing protein (Vcp), mRNA. /PROD=valosin-containing protein /FL=gb:NM_053864.1 gb:U11760.1 NM_053864 valosin-containing protein Vcp 116643 NM_053864 0006302 // double-strand break repair // inferred from sequence or structural similarity /// 0006810 // transport // inferred from electronic annotation /// 0006888 // ER to Golgi vesicle-mediated transport // inferred from mutant phenotype /// 0006919 // caspase activation // inferred from sequence or structural similarity /// 0006974 // response to DNA damage stimulus // inferred from sequence or structural similarity /// 0030970 // retrograde protein transport, ER to cytosol // inferred from sequence or structural similarity /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // inferred from mutant phenotype /// 0051260 // protein homooligomerization // inferred from direct assay 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0005792 // microsome // inferred from direct assay /// 0005792 // microsome // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from sequence or structural similarity /// 0005524 // ATP binding // inferred from electronic annotation /// 0008289 // lipid binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0016887 // ATPase activity // inferred from direct assay /// 0017111 // nucleoside-triphosphatase activity // inferred from electronic annotation /// 0019904 // protein domain specific binding // inferred from sequence or structural similarity
1367456_at NM_031237 Rattus norvegicus Mar 11, 2009 Consensus sequence GenBank gb:NM_031237.1 /DB_XREF=gi:13676842 /GEN=Ube2d3 /FEA=FLmRNA /CNT=47 /TID=Rn.2778.1 /TIER=FL+Stack /STK=11 /UG=Rn.2778 /LL=81920 /DEF=Rattus norvegicus ubiquitin-conjugating enzyme E2D 3 (homologous to yeast UBC45) (Ube2d3), mRNA. /PROD=ubiquitin-conjugating enzyme E2D 3 (homologousto yeast UBC45) /FL=gb:NM_031237.1 gb:AB006852.1 gb:U13175.1 NM_031237 ubiquitin-conjugating enzyme E2D 3 (UBC4/5 homolog, yeast) Ube2d3 81920 NM_031237 0006511 // ubiquitin-dependent protein catabolic process // inferred from direct assay /// 0006511 // ubiquitin-dependent protein catabolic process // inferred from electronic annotation /// 0016567 // protein ubiquitination // inferred from sequence or structural similarity /// 0030509 // BMP signaling pathway // inferred from sequence or structural similarity /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process // inferred from sequence or structural similarity /// 0043687 // post-translational protein modification // inferred from electronic annotation /// 0051246 // regulation of protein metabolic process // inferred from electronic annotation 0004842 // ubiquitin-protein ligase activity // inferred from direct assay /// 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from sequence or structural similarity /// 0016874 // ligase activity // inferred from electronic annotation /// 0019787 // small conjugating protein ligase activity // inferred from electronic annotation
1367457_at NM_053739 Rattus norvegicus Mar 11, 2009 Consensus sequence GenBank gb:NM_053739.1 /DB_XREF=gi:16758561 /GEN=Becn1 /FEA=FLmRNA /CNT=20 /TID=Rn.2776.1 /TIER=FL+Stack /STK=10 /UG=Rn.2776 /LL=114558 /DEF=Rattus norvegicus beclin 1 (coiled-coil, myosin-like BCL2-interacting protein) (Becn1), mRNA. /PROD=beclin 1 (coiled-coil, myosin-likeBCL2-interacting protein) /FL=gb:AY033824.1 gb:NM_053739.1 NM_053739 beclin 1, autophagy related Becn1 114558 NM_001034117 /// NM_053739 0000045 // autophagic vacuole formation // inferred from mutant phenotype /// 0006914 // autophagy // inferred from electronic annotation /// 0006914 // autophagy // inferred from expression pattern /// 0006914 // autophagy // inferred from mutant phenotype /// 0006914 // autophagy // inferred from sequence or structural similarity /// 0008285 // negative regulation of cell proliferation // inferred from sequence or structural similarity /// 0009615 // response to virus // inferred from electronic annotation /// 0016239 // positive regulation of macroautophagy // inferred from sequence or structural similarity /// 0051707 // response to other organism // inferred from sequence or structural similarity 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005802 // trans-Golgi network // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0016023 // cytoplasmic membrane-bounded vesicle // inferred from sequence or structural similarity /// 0043234 // protein complex // inferred from sequence or structural similarity 0005515 // protein binding // inferred from sequence or structural similarity
1367458_at NM_031342 Rattus norvegicus Mar 11, 2009 Consensus sequence GenBank gb:NM_031342.1 /DB_XREF=gi:13786177 /GEN=Lypla2 /FEA=FLmRNA /CNT=14 /TID=Rn.8586.1 /TIER=FL /STK=4 /UG=Rn.8586 /LL=83510 /DEF=Rattus norvegicus lysophospholipase II (Lypla2), mRNA. /PROD=lysophospholipase II /FL=gb:NM_031342.1 gb:AB021645.1 NM_031342 lysophospholipase 2 Lypla2 83510 NM_031342 0006629 // lipid metabolic process // inferred from electronic annotation /// 0006631 // fatty acid metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation 0016787 // hydrolase activity // inferred from electronic annotation
1367459_at BE329198 Rattus norvegicus Mar 11, 2009 Consensus sequence GenBank gb:BE329198 /DB_XREF=gi:9202974 /DB_XREF=hq38b08.x1 /CLONE=IMAGE:3121623 /FEA=FLmRNA /CNT=82 /TID=Rn.1391.1 /TIER=Stack /STK=9 /UG=Rn.1391 /LL=64310 /UG_GENE=Arf1 /UG_TITLE=ADP-ribosylation factor 1 /FL=gb:NM_022518.1 gb:L12380.1 BE329198 ADP-ribosylation factor 1 Arf1 64310 NM_022518 0006810 // transport // inferred from electronic annotation /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // inferred from sequence or structural similarity /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0015031 // protein transport // inferred from electronic annotation /// 0016044 // membrane organization // inferred from sequence or structural similarity /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from sequence or structural similarity /// 0048205 // COPI coating of Golgi vesicle // inferred from sequence or structural similarity 0000139 // Golgi membrane // inferred from sequence or structural similarity /// 0005622 // intracellular // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0012505 // endomembrane system // inferred from sequence or structural similarity /// 0030017 // sarcomere // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from sequence or structural similarity /// 0005525 // GTP binding // inferred from electronic annotation
1367460_at BM387347 Rattus norvegicus Mar 11, 2009 Consensus sequence GenBank gb:BM387347 /DB_XREF=gi:18187400 /DB_XREF=UI-R-CN1-cjj-c-19-0-UI.s1 /CLONE=UI-R-CN1-cjj-c-19-0-UI /FEA=FLmRNA /CNT=36 /TID=Rn.1441.1 /TIER=Stack /STK=20 /UG=Rn.1441 /LL=29661 /UG_GENE=Gdi2 /UG_TITLE=guanosine diphosphate (GDP) dissociation inhibitor 2 /FL=gb:NM_017276.1 BM387347 GDP dissociation inhibitor 2 Gdi2 29662 NM_017276 0007264 // small GTPase mediated signal transduction // inferred from sequence or structural similarity /// 0015031 // protein transport // inferred from electronic annotation /// 0015031 // protein transport // traceable author statement /// 0016192 // vesicle-mediated transport // inferred from expression pattern /// 0043087 // regulation of GTPase activity // inferred from electronic annotation 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005829 // cytosol // traceable author statement /// 0009986 // cell surface // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation 0005093 // Rab GDP-dissociation inhibitor activity // inferred from direct assay /// 0005093 // Rab GDP-dissociation inhibitor activity // inferred from electronic annotation /// 0005096 // GTPase activator activity // inferred from electronic annotation /// 0005097 // Rab GTPase activator activity // inferred from sequence or structural similarity /// 0031267 // small GTPase binding // inferred from direct assay
1367461_at NM_080781 Rattus norvegicus Mar 11, 2009 Consensus sequence GenBank gb:NM_080781.1 /DB_XREF=gi:18158448 /GEN=Copb1 /FEA=FLmRNA /CNT=30 /TID=Rn.4327.1 /TIER=FL+Stack /STK=14 /UG=Rn.4327 /LL=114023 /DEF=Rattus norvegicus coatomer protein complex, subunit beta 1 (Copb1), mRNA. /PROD=coatomer protein complex, subunit beta 1 /FL=gb:NM_080781.1 NM_080781 coatomer protein complex, subunit beta 1 Copb1 114023 NM_080781 0006810 // transport // inferred from electronic annotation /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // inferred from sequence or structural similarity /// 0006890 // retrograde vesicle-mediated transport, Golgi to ER // traceable author statement /// 0006891 // intra-Golgi vesicle-mediated transport // inferred from direct assay /// 0015031 // protein transport // inferred from electronic annotation /// 0016044 // membrane organization // inferred from sequence or structural similarity /// 0016192 // vesicle-mediated transport // inferred from electronic annotation /// 0048205 // COPI coating of Golgi vesicle // inferred from sequence or structural similarity 0000139 // Golgi membrane // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0005794 // Golgi apparatus // inferred from sequence or structural similarity /// 0005794 // Golgi apparatus // inferred from electronic annotation /// 0005798 // Golgi-associated vesicle // inferred from direct assay /// 0005829 // cytosol // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electronic annotation /// 0030117 // membrane coat // inferred from electronic annotation /// 0030126 // COPI vesicle coat // inferred from direct assay /// 0030126 // COPI vesicle coat // inferred from electronic annotation /// 0031410 // cytoplasmic vesicle // inferred from electronic annotation 0005198 // structural molecule activity // inferred from electronic annotation /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from direct assay /// 0005515 // protein binding // inferred from sequence or structural similarity /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction
1367462_at U10861 Rattus norvegicus Mar 11, 2009 Consensus sequence GenBank gb:U10861.1 /DB_XREF=gi:505657 /FEA=FLmRNA /CNT=39 /TID=Rn.3430.1 /TIER=FL+Stack /STK=7 /UG=Rn.3430 /LL=29156 /UG_GENE=Capns1 /DEF=Rattus norvegicus calpain small subunit mRNA, complete cds. /PROD=calpain small subunit /FL=gb:U10861.1 U10861 calpain, small subunit 1 Capns1 29156 NM_017118 0006508 // proteolysis // inferred from mutant phenotype 0005634 // nucleus // inferred from sequence or structural similarity /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004198 // calcium-dependent cysteine-type endopeptidase activity // inferred from mutant phenotype /// 0004198 // calcium-dependent cysteine-type endopeptidase activity // inferred from sequence or structural similarity /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005509 // calcium ion binding // traceable author statement /// 0005515 // protein binding // inferred from physical interaction /// 0005515 // protein binding // inferred from sequence or structural similarity /// 0046982 // protein heterodimerization activity // inferred from physical interaction
1367463_at AI235510 Rattus norvegicus Mar 11, 2009 Consensus sequence GenBank gb:AI235510 /DB_XREF=gi:3829016 /DB_XREF=EST232072 /CLONE=ROVCS86 /FEA=mRNA /CNT=29 /TID=Rn.3235.1 /TIER=Stack /STK=23 /UG=Rn.3235 /UG_TITLE=B-cell receptor associated protein 37 (BAP-37) mRNA, partial cds and 3 untranslated sequence AI235510 prohibitin 2 Phb2 114766 NM_001013035 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from electronic annotation /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005743 // mitochondrial inner membrane // inferred from sequence or structural similarity /// 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation 0004872 // receptor activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from sequence or structural similarity /// 0016566 // specific transcriptional repressor activity // inferred from sequence or structural similarity
1367464_at AI598391 Rattus norvegicus Mar 11, 2009 Consensus sequence GenBank gb:AI598391 /DB_XREF=gi:4607439 /DB_XREF=EST250094 /CLONE=REMDQ63 /FEA=mRNA /CNT=15 /TID=Rn.21553.1 /TIER=Stack /STK=11 /UG=Rn.21553 /LL=84401 /UG_GENE=Siahbp1 /UG_TITLE=siah binding protein 1; FBP interacting repressor; pyrimidine tract binding splicing factor; Ro ribonucleoprotein-binding protein 1 AI598391 siah binding protein 1; FBP interacting repressor; pyrimidine tract binding splicing factor; Ro ribonucleoprotein-binding protein 1 Siahbp1 84401 XM_001057313 /// XM_001070780 /// XM_001071005 /// XM_343268 0006350 // transcription // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// 0006397 // mRNA processing // inferred from electronic annotation /// 0006915 // apoptosis // inferred from electronic annotation /// 0008380 // RNA splicing // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation /// 0030529 // ribonucleoprotein complex // inferred from electronic annotation 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003723 // RNA binding // inferred from electronic annotation
1367465_at AI013627 Rattus norvegicus Mar 11, 2009 Consensus sequence GenBank gb:AI013627 /DB_XREF=gi:3227683 /DB_XREF=EST208302 /CLONE=RSPBP78 /FEA=DNA /CNT=22 /TID=Rn.7262.1 /TIER=Stack /STK=19 /UG=Rn.7262 /UG_TITLE=Rattus norvegicus DAD-1 gene AI013627 defender against cell death 1 Dad1 192275 NM_138910 0001824 // blastocyst development // inferred from sequence or structural similarity /// 0006915 // apoptosis // inferred from electronic annotation /// 0006916 // anti-apoptosis // inferred from sequence or structural similarity /// 0007584 // response to nutrient // inferred from expression pattern /// 0042493 // response to drug // inferred from expression pattern 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electronic annotation 0004579 // dolichyl-diphosphooligosaccharide-protein glycotransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation
1367466_at AI406518 Rattus norvegicus Mar 11, 2009 Consensus sequence GenBank gb:AI406518 /DB_XREF=gi:4250022 /DB_XREF=EST234804 /CLONE=RBRDL35 /FEA=EST /CNT=49 /TID=Rn.897.1 /TIER=Stack /STK=47 /UG=Rn.897 /UG_TITLE=ESTs, Moderately similar to C50C3.6.p (Caenorhabditis elegans) (C.elegans) AI406518 PRP8 pre-mRNA processing factor 8 homolog (S. cerevisiae) Prpf8 287530 XM_001080695 /// XM_213385 0000398 // nuclear mRNA splicing, via spliceosome // inferred from sequence or structural similarity /// 0000398 // nuclear mRNA splicing, via spliceosome // inferred from electronic annotation 0005681 // spliceosome // inferred from electronic annotation 0005515 // protein binding // inferred from sequence or structural similarity
1367467_at BG380638 Rattus norvegicus Mar 11, 2009 Consensus sequence GenBank gb:BG380638 /DB_XREF=gi:13305110 /DB_XREF=UI-R-CT0-btz-f-07-0-UI.s1 /CLONE=UI-R-CT0-btz-f-07-0-UI /FEA=EST /CNT=56 /TID=Rn.121.1 /TIER=Stack /STK=45 /UG=Rn.121 /UG_TITLE=ESTs, Weakly similar to T26931 hypothetical protein Y45F10D.4 - Caenorhabditis elegans (C.elegans) BG380638 iron-sulfur cluster scaffold homolog (E. coli) Iscu 288740 NM_001105936 /// XM_001078081 /// XM_213811 0016226 // iron-sulfur cluster assembly // inferred from electronic annotation 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005739 // mitochondrion // inferred from sequence or structural similarity /// 0005829 // cytosol // inferred from sequence or structural similarity 0005506 // iron ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0032947 // protein complex scaffold // inferred from sequence or structural similarity /// 0051536 // iron-sulfur cluster binding // inferred from electronic annotation
1367468_at BM386654 Rattus norvegicus Mar 11, 2009 Consensus sequence GenBank gb:BM386654 /DB_XREF=gi:18186707 /DB_XREF=UI-R-CN1-cjg-j-09-0-UI.s1 /CLONE=UI-R-CN1-cjg-j-09-0-UI /FEA=EST /CNT=43 /TID=Rn.1095.1 /TIER=Stack /STK=38 /UG=Rn.1095 /UG_TITLE=ESTs, Weakly similar to ZF94_RAT ZINC FINGER PROTEIN 94 (ZFP-94) (ZINC FINGER PROTEIN Y1) (RLZF-Y) (R.norvegicus) BM386654 SCAN domain-containing 1 Scand1 362252 NM_001108599 /// XM_001066597 /// XM_342558 0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003700 // transcription factor activity // inferred from electronic annotation /// 0003713 // transcription coactivator activity // inferred from sequence or structural similarity
1367469_at BG667162 Rattus norvegicus Mar 11, 2009 Consensus sequence GenBank gb:BG667162 /DB_XREF=gi:13889084 /DB_XREF=DRA07E03 /CLONE=DRA07E03 /FEA=EST /CNT=59 /TID=Rn.3992.1 /TIER=Stack /STK=32 /UG=Rn.3992 /UG_TITLE=ESTs, Weakly similar to S49172 translation initiation factor eIF-4 gamma (H.sapiens) BG667162 eukaryotic translation initiation factor 4, gamma 2 /// eukaryotic translation initiation factor 4, gamma 2, pseudogene 1 /// similar to eukaryotic translation initiation factor 4 gamma, 2 Eif4g2 /// Eif4g2-ps1 /// LOC678831 171362 361628 678831 NM_001017374 /// XM_001072139 /// XM_001077834 /// XM_341907 /// XR_007294 0006446 // regulation of translational initiation // inferred from sequence or structural similarity /// 0016070 // RNA metabolic process // inferred from electronic annotation 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0016281 // eukaryotic translation initiation factor 4F complex // inferred from sequence or structural similarity 0003743 // translation initiation factor activity // inferred from sequence or structural similarity /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from sequence or structural similarity /// 0008135 // translation factor activity, nucleic acid binding // inferred from sequence or structural similarity
1367470_at AA851321 Rattus norvegicus Mar 11, 2009 Consensus sequence GenBank gb:AA851321 /DB_XREF=gi:2938861 /DB_XREF=EST194089 /CLONE=RPLAF21 /FEA=EST /CNT=34 /TID=Rn.15760.1 /TIER=Stack /STK=31 /UG=Rn.15760 /UG_TITLE=ESTs, Weakly similar to ARF6_HUMAN ADP-RIBOSYLATION FACTOR 6 (R.norvegicus) AA851321 SAR1 homolog A (S. cerevisiae) Sar1a 361842 NM_001007739 0006886 // intracellular protein transport // inferred from electronic annotation /// 0016192 // vesicle-mediated transport // inferred from sequence or structural similarity 0005622 // intracellular // inferred from electronic annotation /// 0005783 // endoplasmic reticulum // inferred from sequence or structural similarity /// 0016529 // sarcoplasmic reticulum // inferred from sequence or structural similarity 0000166 // nucleotide binding // inferred from electronic annotation /// 0005525 // GTP binding // inferred from electronic annotation
1367471_at BI279090 Rattus norvegicus Mar 11, 2009 Consensus sequence GenBank gb:BI279090 /DB_XREF=gi:14926572 /DB_XREF=UI-R-DA0-byj-b-03-0-UI.s1 /CLONE=UI-R-DA0-byj-b-03-0-UI /FEA=EST /CNT=38 /TID=Rn.1769.1 /TIER=Stack /STK=30 /UG=Rn.1769 /UG_TITLE=ESTs, Highly similar to RPB5_HUMAN DNA-DIRECTED RNA POLYMERASE II 23 KD POLYPEPTIDE (H.sapiens) BI279090 polymerase (RNA) II (DNA directed) polypeptide E, 25kDa Polr2e 690966 NM_001109614 /// XM_001076333 0000398 // nuclear mRNA splicing, via spliceosome // inferred from sequence or structural similarity /// 0006350 // transcription // inferred from electronic annotation /// 0006367 // transcription initiation from RNA polymerase II promoter // inferred from sequence or structural similarity /// 0006368 // RNA elongation from RNA polymerase II promoter // inferred from sequence or structural similarity 0005634 // nucleus // inferred from electronic annotation /// 0005654 // nucleoplasm // inferred from sequence or structural similarity 0003677 // DNA binding // inferred from electronic annotation /// 0003899 // DNA-directed RNA polymerase activity // inferred from electronic annotation

Total number of rows: 15333

Table truncated, full table size 8170 Kbytes.






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