GEO help: Mouse over screen elements for information.
Status
Public on Aug 29, 2006
Title
Affymetrix GeneChip Mapping Pre-Release 10K Array (ax13339)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens Manufacturer
Affymetrix
Manufacture protocol
see web site of Affymetrix
Description
This is the pre-release version of the Affymetrix 10K array (GPL1266).
Submission date
Jan 30, 2006
Last update date
Aug 29, 2006
Organization
Ottawa Hospital Research Institute
Phone
(613) 737-8899 -73255
Department
Cellular and Molecular Medicine
Lab
Ottawa Bioinformatics Core Facility
Street address
501 Smyth Rd.
City
Ottawa
State/province
ON
ZIP/Postal code
K1H 8L6
Country
Canada
Samples (9)
GSM94529 , GSM94530 , GSM94531 , GSM94532 , GSM94533 , GSM94534
Series (2)
GSE4132 Mapping of H4-acetylated chromatin modifications in differentiating human primary myoblasts
GSE4133 The Genome Wide Distribution of Acetylated Histone H4 Remodelled through Human Primary Myoblast Differentiation
Data table header descriptions ID dbSNP_RS dbSNP RS ID
Chr Position Avg_Gen Female_Gen Male_Gen STR_1 STR_2 AssignCat Allele_A Allele_B LeftSeq RightSeq SPOT_ID spot identifier
order
Data table ID dbSNP_RS Chr Position Avg_Gen Female_Gen Male_Gen STR_1 STR_2 AssignCat Allele_A Allele_B LeftSeq RightSeq SPOT_ID order 273278
rs966321 chr1
3593663
5.94 cM
6.07 cM
5.82 cM
D1S468
D1S2845
1
A
C
AGGCCTGAGATGAGAC
AAAATGTTTACTGTGG
dbSNP: rs966321
1
694296
rs1599169 chr1
4349627
8.06 cM
8.66 cM
7.45 cM
D1S2660
D1S2132
2
A
G
TCGGTTTGCAAAATAA
TTTGGTCTCATTAAAC
dbSNP: rs1599169
2
609730
rs1414379 chr1
5375900
9.67 cM
9.49 cM
9.84 cM
D1S2132
D1S2633
1
C
T
TGCATGTGTGTCTTCT
TGGAAATGTGTCTGTA
dbSNP: rs1414379
3
913001
rs1890191 chr1
5463767
9.81 cM
9.57 cM
10.05 cM
D1S2132
D1S2633
1
A
G
CCTGCAGAAAGTTCTC
GTAGATTGGTCGGGGT
dbSNP: rs1890191
4
574502
rs1396904 chr1
6472910
12.09 cM
12.51 cM
11.67 cM
D1S2642
D1S2663
1
A
C
CTTTCTAAAAGCACTA
TACTGTAAAACTTAGG
dbSNP: rs1396904
5
42354
rs950493 chr1
6521429
12.19 cM
12.67 cM
11.70 cM
D1S2642
D1S2663
1
C
T
TGTGTTGAAGGAATAA
TACTTGTTCATTTTGT
dbSNP: rs950493
6
218512
rs2003346 chr1
7001081
13.05 cM
13.89 cM
12.21 cM
D1S2694
D1S548
3
A
G
TAAAGTATGTTGTTCT
GCACCATGCATGGACT
dbSNP: rs2003346
7
617930
rs1418489 chr1
7001827
13.05 cM
13.89 cM
12.21 cM
D1S2694
D1S548
1
A
G
GTGTGGCTGGTGATGA
GGACTGAGAGTCATCC
dbSNP: rs1418489
8
617931
rs1418490 chr1
7002000
13.05 cM
13.89 cM
12.21 cM
D1S2694
D1S548
1
A
G
GGAGGCCCCAGTGGAC
CTGAATTCCAGCCTCT
dbSNP: rs1418490
9
246331
rs705695 chr1
7012408
13.07 cM
13.89 cM
12.25 cM
D1S2694
D1S548
1
C
T
AAGGGAGTTGAGGTGT
CAGCCATCAAAACCCA
dbSNP: rs705695
10
730553
rs228651 chr1
7493065
13.72 cM
14.87 cM
12.58 cM
D1S508
D1S1612
1
A
G
ACGTCATGAACTCAGC
TTGGAAGTTTTTCTAG
dbSNP: rs228651
11
272985
rs966134 chr1
7955174
14.15 cM
15.26 cM
13.04 cM
D1S1612
D1S503
1
A
G
TTTGCAATGTGTTGTC
TTACAGGACTGTAATT
dbSNP: rs966134
12
43572
rs205474 chr1
10794209
17.56 cM
19.86 cM
15.26 cM
D1S2736
D1S2667
1
C
T
GCTGGCCACTTTTACT
TGAGCATGAAGAGCTG
dbSNP: rs205474
13
41639
rs718206 chr1
11255640
19.20 cM
21.50 cM
16.91 cM
D1S2736
D1S2667
1
A
T
TCAATGAGCAACAGAC
TTTCTGCAACAGGCAG
dbSNP: rs718206
14
504548
rs1361912 chr1
12775488
22.35 cM
25.73 cM
18.97 cM
D1S434
D1S228
1
C
T
TCTCAGTTGTCTTCAG
TCAATATAATCCTTAT
dbSNP: rs1361912
15
214248
chr1
13417726
24.08 cM
28.40 cM
19.77 cM
D1S228
D1S2834
3
C
T
GTATATGTTTTATTCA
GTTCTCGGTGGCGTAT
chr1 pos 13417726
16
593589
rs1406417 chr1
13490181
24.22 cM
28.66 cM
19.77 cM
D1S228
D1S2834
1
G
T
GACAACTTGGTATTTC
TTCATTCTTAGAATTC
dbSNP: rs1406417
17
593588
rs1406416 chr1
13490218
24.22 cM
28.66 cM
19.77 cM
D1S228
D1S2834
1
C
T
TCAGGCTTTATTTGCC
CAAGTTTCTCCTTCAC
dbSNP: rs1406416
18
1751976
rs2884788 chr1
13493951
24.22 cM
28.68 cM
19.77 cM
D1S228
D1S2834
1
A
T
AGATGTACCTACTGCA
ATGGCTTCTCCTCACA
dbSNP: rs2884788
19
973501
rs1210110 chr1
13494137
24.22 cM
28.68 cM
19.77 cM
D1S228
D1S2834
1
A
G
CATAACTGTCTAAAAC
TAAGTGCTATTTTAAG
dbSNP: rs1210110
20
10043 1325 Kbytes .Supplementary data files not provided
Less...
More...