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Platform GPL33 Query DataSets for GPL33
Status Public on Jan 17, 2002
Title [MG_U74B] Affymetrix Murine Genome U74B Array
Technology type in situ oligonucleotide
Distribution commercial
Organism Mus musculus
Manufacturer Affymetrix
Manufacture protocol see manufacturer's web site
 
Description Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

The MG-U74 version 1 set comprises three arrays representing over 36,000 mouse genes and ESTs.

Keywords = high density oligonucleotide array
June 24, 2016: annotation table updated with netaffx build 35
 
Web link http://www.affymetrix.com/support/technical/byproduct.affx?product=mgu74
http://www.affymetrix.com/analysis/index.affx
Submission date Jan 17, 2002
Last update date Jul 01, 2016
Organization Affymetrix, Inc.
E-mail geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (10) GSM1234, GSM1240, GSM1246, GSM1252, GSM1270, GSM1276 
Series (2)
GSE483 Allergic response to ragweed in lung
GSE6106 Sense-antisense transcript comparison in mouse brain and kidney

Data table header descriptions
ID Affymetrix Probe Set ID
GB_ACC GenBank Accession Number
SPOT_ID identifies controls
Species Scientific Name The genus and species of the organism represented by the probe set.
Annotation Date The date that the annotations for this probe array were last updated. It will generally be earlier than the date when the annotations were posted on the Affymetrix web site.
Sequence Type
Sequence Source The database from which the sequence used to design this probe set was taken.
Target Description
Representative Public ID The accession number of a representative sequence. Note that for consensus-based probe sets, the representative sequence is only one of several sequences (sequence sub-clusters) used to build the consensus sequence and it is not directly used to derive the probe sequences. The representative sequence is chosen during array design as a sequence that is best associated with the transcribed region being interrogated by the probe set. Refer to the "Sequence Source" field to determine the database used.
Gene Title Title of Gene represented by the probe set.
Gene Symbol A gene symbol, when one is available (from UniGene).
ENTREZ_GENE_ID Entrez Gene Database UID
RefSeq Transcript ID References to multiple sequences in RefSeq. The field contains the ID and Description for each entry, and there can be multiple entries per ProbeSet.
Gene Ontology Biological Process Gene Ontology Consortium Biological Process derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Cellular Component Gene Ontology Consortium Cellular Component derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Molecular Function Gene Ontology Consortium Molecular Function derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".

Data table
ID GB_ACC SPOT_ID Species Scientific Name Annotation Date Sequence Type Sequence Source Target Description Representative Public ID Gene Title Gene Symbol ENTREZ_GENE_ID RefSeq Transcript ID Gene Ontology Biological Process Gene Ontology Cellular Component Gene Ontology Molecular Function
104769_at AA461724 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl AA461724:vg65h05.r1 Mus musculus cDNA, 5' end /clone=IMAGE-870873 /clone_end=5' /gb=AA461724 /gi=2186615 /ug=Mm.33207 /len=329 /STRA=for AA461724 LIM domain and actin binding 1 Lima1 65970 NM_001113545 /// NM_023063 /// XM_006521244 /// XM_006521245 /// XM_006521246 /// XM_006521247 0030835 // negative regulation of actin filament depolymerization // not recorded /// 0031529 // ruffle organization // not recorded /// 0051017 // actin filament bundle assembly // not recorded 0001725 // stress fiber // not recorded /// 0005737 // cytoplasm // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0005925 // focal adhesion // not recorded /// 0015629 // actin cytoskeleton // inferred from direct assay /// 0015629 // actin cytoskeleton // not recorded 0003779 // actin binding // inferred from electronic annotation /// 0003785 // actin monomer binding // not recorded /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0051015 // actin filament binding // not recorded
104770_at AI552899 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl AI552899:vg67g11.y1 Mus musculus cDNA, 5' end /clone=IMAGE-871076 /clone_end=5' /gb=AI552899 /gi=4485262 /ug=Mm.33209 /len=390 /STRA=rev AI552899
104771_at AA183662 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl AA183662:mt20b01.r1 Mus musculus cDNA, 5' end /clone=IMAGE-621577 /clone_end=5' /gb=AA183662 /gi=1767044 /ug=Mm.33212 /len=231 /STRA=for AA183662 RAS-related C3 botulinum substrate 2 Rac2 19354 NM_009008 0006184 // GTP catabolic process // inferred from direct assay /// 0006886 // intracellular protein transport // inferred from electronic annotation /// 0006913 // nucleocytoplasmic transport // inferred from electronic annotation /// 0006935 // chemotaxis // inferred from direct assay /// 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor signaling pathway // inferred from genetic interaction /// 0007264 // small GTPase mediated signal transduction // inferred from electronic annotation /// 0008284 // positive regulation of cell proliferation // inferred from genetic interaction /// 0008284 // positive regulation of cell proliferation // inferred from mutant phenotype /// 0015031 // protein transport // inferred from electronic annotation /// 0030031 // cell projection assembly // inferred from direct assay /// 0030036 // actin cytoskeleton organization // inferred from direct assay /// 0030036 // actin cytoskeleton organization // not recorded /// 0045453 // bone resorption // not recorded /// 0060263 // regulation of respiratory burst // not recorded 0005622 // intracellular // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0016020 // membrane // inferred from direct assay /// 0070062 // extracellular vesicular exosome // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from direct assay /// 0005525 // GTP binding // inferred from electronic annotation
104772_at AW125596 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl AW125596:UI-M-BH2.2-aqj-e-06-0-UI.s1 Mus musculus cDNA, 3' end /clone=UI-M-BH2.2-aqj-e-06-0-UI /clone_end=3' /gb=AW125596 /gi=6101126 /ug=Mm.33224 /len=469 /STRA=rev AW125596 transmembrane protein 200A Tmem200a 77220 NM_029881 /// XM_006512919 /// XM_006512920 /// XM_006512921 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation
104773_at AI643173 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl AI643173:vg46g01.y1 Mus musculus cDNA, 5' end /clone=IMAGE-864432 /clone_end=5' /gb=AI643173 /gi=4721648 /ug=Mm.33226 /len=490 /STRA=rev AI643173
104774_at AA684400 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl AA684400:vm69e01.s1 Mus musculus cDNA, 5' end /clone=IMAGE-1003512 /clone_end=5' /gb=AA684400 /gi=2670986 /ug=Mm.33234 /len=668 /STRA=for AA684400
104775_at AI850586 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl AI850586:UI-M-BG1-aij-h-01-0-UI.s1 Mus musculus cDNA, 3' end /clone=UI-M-BG1-aij-h-01-0-UI /clone_end=3' /gb=AI850586 /gi=5494492 /ug=Mm.33235 /len=330 /STRA=for AI850586 glutamine and serine rich 1 Qser1 99003 NM_001123327 /// XM_006500458 /// XM_006500459 /// XM_006500460
104776_at AA600617 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl AA600617:vm76e11.r1 Mus musculus cDNA, 5' end /clone=IMAGE-1004204 /clone_end=5' /gb=AA600617 /gi=2434242 /ug=Mm.33238 /len=414 /STRA=rev AA600617
104777_at AI594247 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl AI594247:vm83h11.y1 Mus musculus cDNA, 5' end /clone=IMAGE-1004901 /clone_end=5' /gb=AI594247 /gi=4603295 /ug=Mm.33243 /len=570 /STRA=rev AI594247
104778_at AI503093 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl AI503093:vm90c03.x1 Mus musculus cDNA, 3' end /clone=IMAGE-1005508 /clone_end=3' /gb=AI503093 /gi=4400944 /ug=Mm.33246 /len=243 /STRA=rev AI503093 zinc finger SWIM-type containing 5 Zswim5 74464 NM_001029912 0005615 // extracellular space // not recorded 0008270 // zinc ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation
104779_at AA624262 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl AA624262:vn01b01.r1 Mus musculus cDNA, 5' end /clone=IMAGE-1006441 /clone_end=5' /gb=AA624262 /gi=2528138 /ug=Mm.33253 /len=469 /STRA=rev AA624262 DNA segment, Chr 2, Brigham & Women's Genetics 0886 expressed D2Bwg0886e 52841
104780_at AI503277 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl AI503277:vn13c05.x1 Mus musculus cDNA, 3' end /clone=IMAGE-1021064 /clone_end=3' /gb=AI503277 /gi=4401128 /ug=Mm.33270 /len=292 /STRA=rev AI503277
104781_at AW123089 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl AW123089:UI-M-BH2.1-apc-d-06-0-UI.s1 Mus musculus cDNA, 3' end /clone=UI-M-BH2.1-apc-d-06-0-UI /clone_end=3' /gb=AW123089 /gi=6098619 /ug=Mm.33278 /len=549 /STRA=rev AW123089 zinc finger homeobox 2 Zfhx2 239102 NM_001039198 /// XM_006518979 /// XM_006518980 /// XM_006518981 /// XM_006518982 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0007010 // cytoskeleton organization // inferred from electronic annotation /// 0030534 // adult behavior // inferred from mutant phenotype 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from electronic annotation /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// 0003779 // actin binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0043565 // sequence-specific DNA binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation
104782_at AW045941 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl AW045941:UI-M-BH1-aku-f-04-0-UI.s1 Mus musculus cDNA, 3' end /clone=UI-M-BH1-aku-f-04-0-UI /clone_end=3' /gb=AW045941 /gi=5906470 /ug=Mm.33283 /len=384 /STRA=for AW045941 proline-rich coiled-coil 2C Prrc2c 226562 NM_001081290 /// XM_006496766 /// XM_006496767 /// XM_006496768 /// XM_006496769 /// XM_006496770 /// XM_006496771 /// XM_006496772 0002244 // hematopoietic progenitor cell differentiation // inferred from genetic interaction 0008022 // protein C-terminus binding // not recorded /// 0044822 // poly(A) RNA binding // not recorded
104783_at AI591716 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl AI591716:vq90a10.y1 Mus musculus cDNA, 5' end /clone=IMAGE-1109562 /clone_end=5' /gb=AI591716 /gi=4600764 /ug=Mm.33288 /len=259 /STRA=rev AI591716 mannoside acetylglucosaminyltransferase 5 Mgat5 107895 NM_145128 /// XM_006529055 /// XM_006529056 /// XM_006529057 /// XM_006529058 0006486 // protein glycosylation // inferred from electronic annotation /// 0006487 // protein N-linked glycosylation // inferred from direct assay /// 0006487 // protein N-linked glycosylation // inferred from mutant phenotype 0000139 // Golgi membrane // inferred from electronic annotation /// 0005794 // Golgi apparatus // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0008375 // acetylglucosaminyltransferase activity // inferred from mutant phenotype /// 0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity, transferring glycosyl groups // inferred from electronic annotation /// 0030144 // alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase activity // inferred from mutant phenotype
104784_at AW124055 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl AW124055:UI-M-BH2.1-apn-e-09-0-UI.s1 Mus musculus cDNA, 3' end /clone=UI-M-BH2.1-apn-e-09-0-UI /clone_end=3' /gb=AW124055 /gi=6099585 /ug=Mm.33289 /len=433 /STRA=for AW124055 CCR4-NOT transcription complex, subunit 1 /// predicted gene 6158 Cnot1 /// Gm6158 234594 /// 620499 NM_001205226 /// NM_153164 /// NM_178078 /// XM_006519750 /// XM_006530870 /// XM_006530871 /// XM_006530872 /// XM_006530873 /// XM_006530874 /// XM_006530875 /// XM_006543124 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0001829 // trophectodermal cell differentiation // inferred from mutant phenotype /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006417 // regulation of translation // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0010606 // positive regulation of cytoplasmic mRNA processing body assembly // not recorded /// 0031047 // gene silencing by RNA // inferred from electronic annotation /// 0033147 // negative regulation of intracellular estrogen receptor signaling pathway // not recorded /// 0048387 // negative regulation of retinoic acid receptor signaling pathway // not recorded /// 0060213 // positive regulation of nuclear-transcribed mRNA poly(A) tail shortening // not recorded /// 0090503 // RNA phosphodiester bond hydrolysis, exonucleolytic // not recorded /// 1900153 // positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay // not recorded /// 2000036 // regulation of stem cell maintenance // inferred from mutant phenotype /// 2000036 // regulation of stem cell maintenance // not recorded 0000932 // cytoplasmic mRNA processing body // inferred from direct assay /// 0000932 // cytoplasmic mRNA processing body // not recorded /// 0005615 // extracellular space // not recorded /// 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005778 // peroxisomal membrane // not recorded /// 0030014 // CCR4-NOT complex // not recorded 0004535 // poly(A)-specific ribonuclease activity // not recorded /// 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0030331 // estrogen receptor binding // not recorded /// 0042974 // retinoic acid receptor binding // not recorded /// 0044822 // poly(A) RNA binding // not recorded
104785_at AI503542 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl AI503542:vq93d09.x1 Mus musculus cDNA, 3' end /clone=IMAGE-1109873 /clone_end=3' /gb=AI503542 /gi=4401393 /ug=Mm.33291 /len=419 /STRA=rev AI503542
104786_at AI503564 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl AI503564:vk28e08.x1 Mus musculus cDNA, 3' end /clone=IMAGE-947942 /clone_end=3' /gb=AI503564 /gi=4401415 /ug=Mm.33297 /len=365 /STRA=rev AI503564 occludin Ocln 18260 NM_008756 /// XM_006517563 /// XM_006517564 /// XM_006517565 /// XM_006517566 0032259 // methylation // not recorded /// 0045216 // cell-cell junction organization // not recorded /// 0046498 // S-adenosylhomocysteine metabolic process // not recorded /// 0046500 // S-adenosylmethionine metabolic process // not recorded /// 0070830 // tight junction assembly // not recorded 0005829 // cytosol // not recorded /// 0005886 // plasma membrane // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005911 // cell-cell junction // inferred from direct assay /// 0005911 // cell-cell junction // not recorded /// 0005923 // tight junction // inferred from direct assay /// 0005923 // tight junction // not recorded /// 0009986 // cell surface // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016324 // apical plasma membrane // inferred from direct assay /// 0016327 // apicolateral plasma membrane // inferred from direct assay /// 0030054 // cell junction // not recorded /// 0030139 // endocytic vesicle // inferred from direct assay /// 0031410 // cytoplasmic vesicle // not recorded 0005198 // structural molecule activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0008119 // thiopurine S-methyltransferase activity // not recorded /// 0008757 // S-adenosylmethionine-dependent methyltransferase activity // not recorded /// 0019904 // protein domain specific binding // not recorded
104787_at AI503611 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl AI503611:vk38f10.x1 Mus musculus cDNA, 3' end /clone=IMAGE-948907 /clone_end=3' /gb=AI503611 /gi=4401462 /ug=Mm.33301 /len=350 /STRA=rev AI503611 asparagine-linked glycosylation 14 Alg14 66789 NM_024178 /// XM_006501899 0005783 // endoplasmic reticulum // inferred from electronic annotation /// 0005789 // endoplasmic reticulum membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation
104788_at AW124157 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl AW124157:UI-M-BH2.1-apr-g-03-0-UI.s1 Mus musculus cDNA, 3' end /clone=UI-M-BH2.1-apr-g-03-0-UI /clone_end=3' /gb=AW124157 /gi=6099687 /ug=Mm.33313 /len=323 /STRA=rev AW124157 deoxyhypusine synthase Dhps 330817 NM_001039514 /// NM_201408 /// XM_006531129 /// XM_006531130 /// XM_006531131 0008612 // peptidyl-lysine modification to peptidyl-hypusine // inferred from mutant phenotype /// 0042102 // positive regulation of T cell proliferation // inferred from mutant phenotype /// 0042593 // glucose homeostasis // inferred from mutant phenotype /// 0050983 // deoxyhypusine biosynthetic process from spermidine // not recorded /// 0051289 // protein homotetramerization // not recorded 0016740 // transferase activity // inferred from electronic annotation /// 0034038 // deoxyhypusine synthase activity // not recorded

Total number of rows: 12636

Table truncated, full table size 14962 Kbytes.






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