Please note that Gene_ID (included in the SPOT_ID column) is derived from the annotation of the GFF3 file of this database https://genome.jgi.doe.gov/portal/Lentinedodes1/Lentinedodes1.download.html [February 2019] The genome sequence and gene prediction of Lentinula edodes W1-26 were not determined by the JGI, but were downloaded from ShiitakeGDB and have been published (PubMed: 27500531). Please note that this copy of the genome is not maintained by the author and is therefore not automatically updated. This copy of the genome does not include the mitochondrial chromosome or genes. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins. The downloaded GFF3 file contained alternative models on a locus tagged with ".t2", ".t3", ".t4", and so on. We created the FilteredModels track so as to represent only non-overlapping genes, and the GeneCatalog was built based on the FilteredModels. Moreover, we discarded gene models having internal stops and transposable element-derived genes. As a result, 12,538 gene models were finally presented. All gene models before filtering can be found in ExternalModels track.
