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Platform GPL3265

Query DataSets for GPL3265

Status

Public on May 01, 2006

Title

Chicken cDNA DDMET 1700 array version 1.0

Technology type

spotted DNA/cDNA

Distribution

non-commercial

Organism

Gallus gallus

Manufacturer

IFR140 - Ouest Genopole Transcriptome plateform, UMR6061, UMR GA, Rennes

Manufacture protocol

Probes were suspended in 3X SSC/betaine and printed using MicroGrid II (Biorobotics) arrayer and arrayer software version 2.2.2.8

Support

glass

Coating

amino-silane

Description

This set includes 195 differential display cDNA products from lean and fat chickens, 128 metabolism specific cDNAs, 2 fluorescent oligonucleotide (TagF and TagR, Eurogentec) control probes and 3 ready-to-spot PCR products from Arabidopsis thaliana (corresponding to RUBISCO activase (RCA), root cap 1 (RCP1) and papain-type cysteine endopeptidase (XCP2), Stratagene) at 3 different concentrations (10, 40 and 80 ng/µl). We spotted all the probes in triplicate, except control probes in duplicate, resulting in 1728 spots.

Contributor(s)

Bourneuf E, Hérault F, Diot C, Carré W, Assaf S, Lagarrigue S, Douaire M, Monnier A, Mosser J

Submission date

Dec 19, 2005

Last update date

May 01, 2006

Contact name

Christian Diot

E-mail(s)

Christian.Diot@rennes.inra.fr

Organization name

INRA

Department

Animal Genetics

Lab

UMR Génétique Animale

Street address

65, rue de saint-Brieuc, CS 84215

City

Rennes cedex

ZIP/Postal code

35042

Country

France

Samples (28)

More...

GSM88361, GSM88362, GSM88363, GSM88364, GSM88365, GSM88366

Series (1)

GSE3867

Gene expression in chicken livers from lean and fat lines

Data table header descriptions
ID
GB_ACC	GenBank accession number
Block	Refers to Block
Column	Refers to position within Block
Row	Refers to position within Block
Name	clone name
SPOT_ID

Data table
ID	GB_ACC	Block	Column	Row	Name	SPOT_ID
1.1.1		1	1	1	OF 20	OF 20
1.1.2	BF381516	1	1	2	C10-7A-1 - dd
1.1.3	BX540725	1	1	3	MKP1 - agenae
1.1.4		1	1	4	OF 20	OF 20
1.1.5	BF381516	1	1	5	C10-7A-1 - dd
1.1.6	BX540725	1	1	6	MKP1 - agenae
1.1.7		1	1	7	OF 20	OF 20
1.1.8	BF381516	1	1	8	C10-7A-1 - dd
1.1.9	BX540725	1	1	9	MKP1 - agenae
1.10.1		1	10	1	Rcp1 40	Rcp1 40
1.10.2		1	10	2	PLTP - met	AM161056
1.10.3	CT485962	1	10	3	C1-3D-1 - dd
1.10.4		1	10	4	Rcp1 40	Rcp1 40
1.10.5		1	10	5	PLTP - met	AM161056
1.10.6	CT485962	1	10	6	C1-3D-1 - dd
1.10.7		1	10	7	Rcp1 40	Rcp1 40
1.10.8		1	10	8	PLTP - met	AM161056
1.10.9	CT485962	1	10	9	C1-3D-1 - dd
1.11.1		1	11	1	Rcp1 10	Rcp1 10
1.11.2	CT485869	1	11	2	ACADVL - met

Total number of rows: 1728

Table truncated, full table size 59 Kbytes.

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML

Supplementary data files not provided