GEO help: Mouse over screen elements for information.
Status
Public on Aug 04, 2022
Title
HorvathMammalMethylChip320
Technology type
oligonucleotide beads
Distribution
custom-commercial
Organisms
Macaca mulatta ; Homo sapiens ; Mus musculus ; Rattus Manufacturer
Illumina, Inc.
Manufacture protocol
See manufacturer's website
Submission date
Aug 01, 2022
Last update date
Aug 04, 2022
Contact name
Steve Horvath
E-mail(s)
shorvath@altoslabs.com Organization name
University of California, Los Angeles
Department
Human Genetics
Lab
Horvath
Street address
695 Charles E. Young Drive South, Box 708822
City
Los Angeles
State/province
CA
ZIP/Postal code
90095-7088
Country
USA
Samples (783)
GSM6427929 , GSM6427930 , GSM6427931 , GSM6427932 , GSM6427933 , GSM6427934
GSM6427935 ,
GSM6427936 ,
GSM6427937 ,
GSM6427938 ,
GSM6427939 ,
GSM6427940 ,
GSM6427941 ,
GSM6427942 ,
GSM6427943 ,
GSM6427944 ,
GSM6427945 ,
GSM6427946 ,
GSM6427947 ,
GSM6427948 ,
GSM6427949 ,
GSM6427950 ,
GSM6427951 ,
GSM6427952 ,
GSM6427953 ,
GSM6427954 ,
GSM6427955 ,
GSM6427956 ,
GSM6427957 ,
GSM6427958 ,
GSM6427959 ,
GSM6427960 ,
GSM6427961 ,
GSM6427962 ,
GSM6427963 ,
GSM6427964 ,
GSM6427965 ,
GSM6427966 ,
GSM6427967 ,
GSM6427968 ,
GSM6427969 ,
GSM6427970 ,
GSM6427971 ,
GSM6427972 ,
GSM6427973 ,
GSM6427974 ,
GSM6427975 ,
GSM6427976 ,
GSM7007990 ,
GSM7007991 ,
GSM7007992 ,
GSM7007993 ,
GSM7007994 ,
GSM7007995 ,
GSM7007996 ,
GSM7007997 ,
GSM7007998 ,
GSM7007999 ,
GSM7008000 ,
GSM7008001 ,
GSM7008002 ,
GSM7008003 ,
GSM7008004 ,
GSM7008005 ,
GSM7008006 ,
GSM7008007 ,
GSM7008008 ,
GSM7008009 ,
GSM7008010 ,
GSM7008011 ,
GSM7008012 ,
GSM7008013 ,
GSM7008014 ,
GSM7008015 ,
GSM7008016 ,
GSM7008017 ,
GSM7008018 ,
GSM7008019 ,
GSM7008020 ,
GSM7008021 ,
GSM7008022 ,
GSM7008023 ,
GSM7008024 ,
GSM7008025 ,
GSM7008026 ,
GSM7008027 ,
GSM7008028 ,
GSM7008029 ,
GSM7008030 ,
GSM7008031 ,
GSM7008032 ,
GSM7008033 ,
GSM7008034 ,
GSM7008035 ,
GSM7008036 ,
GSM7008037 ,
GSM7008038 ,
GSM7008039 ,
GSM7008040 ,
GSM7008041 ,
GSM7008042 ,
GSM7008043 ,
GSM7008044 ,
GSM7008045 ,
GSM7008046 ,
GSM7008047 ,
GSM7008048 ,
GSM7008049 ,
GSM7008050 ,
GSM7008051 ,
GSM7008052 ,
GSM7008053 ,
GSM7008054 ,
GSM7008055 ,
GSM7008056 ,
GSM7008057 ,
GSM7008058 ,
GSM7008059 ,
GSM7008060 ,
GSM7008061 ,
GSM7008062 ,
GSM7008063 ,
GSM7008064 ,
GSM7008065 ,
GSM7008066 ,
GSM7008067 ,
GSM7008068 ,
GSM7008069 ,
GSM7008070 ,
GSM7008071 ,
GSM7008072 ,
GSM7008073 ,
GSM7008074 ,
GSM7008075 ,
GSM7008076 ,
GSM7008077 ,
GSM7008078 ,
GSM7008079 ,
GSM7008080 ,
GSM7008081 ,
GSM7008082 ,
GSM7008083 ,
GSM7008084 ,
GSM7008085 ,
GSM7008086 ,
GSM7008087 ,
GSM7008088 ,
GSM7008089 ,
GSM7008090 ,
GSM7008091 ,
GSM7008092 ,
GSM7008093 ,
GSM7008094 ,
GSM7008095 ,
GSM7008096 ,
GSM7008097 ,
GSM7008098 ,
GSM7008099 ,
GSM7008100 ,
GSM7008101 ,
GSM7008102 ,
GSM7008103 ,
GSM7008104 ,
GSM7008105 ,
GSM7008106 ,
GSM7008107 ,
GSM7008108 ,
GSM7008109 ,
GSM7008110 ,
GSM7008111 ,
GSM7008112 ,
GSM7008113 ,
GSM7008114 ,
GSM7008115 ,
GSM7008116 ,
GSM7008117 ,
GSM7008118 ,
GSM7008119 ,
GSM7008120 ,
GSM7008121 ,
GSM7008122 ,
GSM7008123 ,
GSM7008124 ,
GSM7008125 ,
GSM7008126 ,
GSM7008127 ,
GSM7008128 ,
GSM7008129 ,
GSM7008130 ,
GSM7008131 ,
GSM7008132 ,
GSM7008133 ,
GSM7008134 ,
GSM7008135 ,
GSM7008136 ,
GSM7008137 ,
GSM7008138 ,
GSM7008139 ,
GSM7008140 ,
GSM7008141 ,
GSM7008142 ,
GSM7008143 ,
GSM7008144 ,
GSM7008145 ,
GSM7008146 ,
GSM7008147 ,
GSM7008148 ,
GSM7008149 ,
GSM7008150 ,
GSM7008151 ,
GSM7008152 ,
GSM7008153 ,
GSM7008154 ,
GSM7008155 ,
GSM7008156 ,
GSM7008157 ,
GSM7008158 ,
GSM7008159 ,
GSM7008160 ,
GSM7008161 ,
GSM7008162 ,
GSM7008163 ,
GSM7008164 ,
GSM7008165 ,
GSM7008166 ,
GSM7008167 ,
GSM7008168 ,
GSM7008169 ,
GSM7008170 ,
GSM7008171 ,
GSM7008172 ,
GSM7008173 ,
GSM7008174 ,
GSM7008175 ,
GSM7008176 ,
GSM7008177 ,
GSM7008178 ,
GSM7008179 ,
GSM7008180 ,
GSM7566429 ,
GSM7566430 ,
GSM7566431 ,
GSM7566432 ,
GSM7566433 ,
GSM7566434 ,
GSM7566435 ,
GSM7566436 ,
GSM7566437 ,
GSM7566438 ,
GSM7566439 ,
GSM7566440 ,
GSM7566441 ,
GSM7566442 ,
GSM7566443 ,
GSM7566444 ,
GSM7566445 ,
GSM7566446 ,
GSM7566447 ,
GSM7566448 ,
GSM7566449 ,
GSM7566450 ,
GSM7566451 ,
GSM7566452 ,
GSM7566453 ,
GSM7566454 ,
GSM7566455 ,
GSM7566456 ,
GSM7566457 ,
GSM7566458 ,
GSM7566459 ,
GSM7566460 ,
GSM7566461 ,
GSM7566462 ,
GSM7566463 ,
GSM7566464 ,
GSM7659788 ,
GSM7659789 ,
GSM7659790 ,
GSM7659791 ,
GSM7659792 ,
GSM7659793 ,
GSM7659794 ,
GSM7659795 ,
GSM7659796 ,
GSM7659797 ,
GSM7659798 ,
GSM7659799 ,
GSM7659800 ,
GSM7659801 ,
GSM7659802 ,
GSM7659803 ,
GSM7659804 ,
GSM7659805 ,
GSM7659806 ,
GSM7659807 ,
GSM7659808 ,
GSM7659809 ,
GSM7659810 ,
GSM7659811 ,
GSM7659812 ,
GSM7659813 ,
GSM7659814 ,
GSM7659815 ,
GSM7659816 ,
GSM7659817 ,
GSM7659818 ,
GSM7659819 ,
GSM7659820 ,
GSM7659821 ,
GSM7659822 ,
GSM7659823 ,
GSM7659824 ,
GSM7659825 ,
GSM7659826 ,
GSM7659827 ,
GSM7659828 ,
GSM7659829 ,
GSM7659830 ,
GSM7659831 ,
GSM7659832 ,
GSM7659833 ,
GSM7659834 ,
GSM7659835 ,
GSM7659836 ,
GSM7659837 ,
GSM7659838 ,
GSM7659839 ,
GSM7659840 ,
GSM7659841 ,
GSM7659842 ,
GSM7659843 ,
GSM7659844 ,
GSM7659845 ,
GSM7659846 ,
GSM7659847 ,
GSM7659848 ,
GSM7659849 ,
GSM7659850 ,
GSM7659851 ,
GSM7659852 ,
GSM7659853 ,
GSM7659854 ,
GSM7659855 ,
GSM7659856 ,
GSM7659857 ,
GSM7659858 ,
GSM7659859 ,
GSM7659860 ,
GSM7659861 ,
GSM7659862 ,
GSM7659863 ,
GSM7659864 ,
GSM7659865 ,
GSM7659866 ,
GSM7659867 ,
GSM7659868 ,
GSM7659869 ,
GSM7659870 ,
GSM7659871 ,
GSM7659872 ,
GSM7659873 ,
GSM7659874 ,
GSM7659875 ,
GSM7659876 ,
GSM7659877 ,
GSM7659878 ,
GSM7659879 ,
GSM7659880 ,
GSM7659881 ,
GSM7659882 ,
GSM7659883 ,
GSM7659884 ,
GSM7659885 ,
GSM7659886 ,
GSM7659887 ,
GSM7659888 ,
GSM7659889 ,
GSM7659890 ,
GSM7659891 ,
GSM7659892 ,
GSM7659893 ,
GSM7659894 ,
GSM7659895 ,
GSM7659896 ,
GSM7659897 ,
GSM7659898 ,
GSM7659899 ,
GSM7659900 ,
GSM7659901 ,
GSM7659902 ,
GSM7659903 ,
GSM7659904 ,
GSM7659905 ,
GSM7659906 ,
GSM7659907 ,
GSM7884785 ,
GSM7884786 ,
GSM7884787 ,
GSM7884788 ,
GSM7884789 ,
GSM7884790 ,
GSM7884791 ,
GSM7884792 ,
GSM7884793 ,
GSM7884794 ,
GSM7884795 ,
GSM7884796 ,
GSM7884797 ,
GSM7884798 ,
GSM7884799 ,
GSM7884800 ,
GSM7884801 ,
GSM7884802 ,
GSM7884803 ,
GSM7884804 ,
GSM7884805 ,
GSM7884806 ,
GSM7884807 ,
GSM7884808 ,
GSM7884809 ,
GSM7884810 ,
GSM7884811 ,
GSM7884812 ,
GSM7884813 ,
GSM7884814 ,
GSM7884815 ,
GSM7884816 ,
GSM7884817 ,
GSM7884818 ,
GSM7884819 ,
GSM7884820 ,
GSM8598458 ,
GSM8598459 ,
GSM8598460 ,
GSM8598461 ,
GSM8598462 ,
GSM8598463 ,
GSM8598464 ,
GSM8598465 ,
GSM8598466 ,
GSM8598467 ,
GSM8598468 ,
GSM8598469 ,
GSM8598470 ,
GSM8598471 ,
GSM8598472 ,
GSM8598473 ,
GSM8598474 ,
GSM8598475 ,
GSM8598476 ,
GSM8598477 ,
GSM8598478 ,
GSM8598479 ,
GSM8598480 ,
GSM8598481 ,
GSM8598482 ,
GSM8598483 ,
GSM8598484 ,
GSM8598485 ,
GSM8598486 ,
GSM8598487 ,
GSM8598488 ,
GSM8598489 ,
GSM8598490 ,
GSM8598491 ,
GSM8598492 ,
GSM8598493 ,
GSM8641734 ,
GSM8641735 ,
GSM8641736 ,
GSM8641737 ,
GSM8641738 ,
GSM8641739 ,
GSM8641740 ,
GSM8641741 ,
GSM8641742 ,
GSM8641743 ,
GSM8641744 ,
GSM8641745 ,
GSM8641746 ,
GSM8641747 ,
GSM8641748 ,
GSM8641749 ,
GSM8641750 ,
GSM8641751 ,
GSM8641752 ,
GSM8641753 ,
GSM8641754 ,
GSM8641755 ,
GSM8641756 ,
GSM8641757 ,
GSM8641758 ,
GSM8641759 ,
GSM8641760 ,
GSM8641761 ,
GSM8641762 ,
GSM8641763 ,
GSM8641764 ,
GSM8641765 ,
GSM8641766 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here Series (15)
GSE224447 DNA methylation and gene expression changes in mice induced by parabiosis and recovery
GSE236617 DNA methylation changes in mice induced by mock parabiosis
GSE238172 P28.ET0213, ET0318, ET0267 Datasets
GSE247179 Multi-omics characterization of partial chemical reprogramming reveals evidence of cell rejuvenation [Array]
GSE247199 Multi-omics characterization of partial chemical reprogramming reveals evidence of cell rejuvenation
GSE280472 The mitochondrial-targeted peptide therapeutic elamipretide improves cardiac and skeletal muscle function during aging without detectable changes in tissue epigenetic or transcriptomic age [methylation array]
GSE280700 The mitochondrial-targeted peptide therapeutic elamipretide improves cardiac and skeletal muscle function during aging without detectable changes in tissue epigenetic or transcriptomic age.
GSE282353 NAD Depletion in Skeletal Muscle does not Compromise Muscle Function or Accelerate Aging
GSE282499 A torpor-like state in mice slows blood epigenetic aging and prolongs healthspan [9155]
GSE282659 A torpor-like state in mice slows blood epigenetic aging and prolongs healthspan [ET0283]
GSE282661 A torpor-like state in mice slows blood epigenetic aging and prolongs healthspan [ET0301]
GSE295416 DNA Methylation Profiling of Hepatic Insulin Response in Young and Aged Mice
Data table header descriptions ID SPOT_ID SYMBOL GeneRegionID mm10.Chr mm10.Coord.probeStart mm10.Coord.probeEnd CGstart CGend strand seq annotation geneChr geneStart geneEnd geneLength geneStrand transcriptId distanceToTSS flank_txIds flank_geneIds flank_gene_distances genic Intergenic Promoter fiveUTR threeUTR Exon Intron downstream distal_intergenic main_Categories ENTREZID ENSEMBL conservationInHuman CGIslandNess CG HumanUniversalChromatinState.stackHMM.Vu.Ernst2022 repeatElements CpG.island Brown_rat.corCalibration Human.corCalibration Mouse.corCalibration Rhesus_macaque.corCalibration
Data table ID SPOT_ID SYMBOL GeneRegionID mm10.Chr mm10.Coord.probeStart mm10.Coord.probeEnd CGstart CGend strand seq annotation geneChr geneStart geneEnd geneLength geneStrand transcriptId distanceToTSS flank_txIds flank_geneIds flank_gene_distances genic Intergenic Promoter fiveUTR threeUTR Exon Intron downstream distal_intergenic main_Categories ENTREZID ENSEMBL conservationInHuman CGIslandNess CG HumanUniversalChromatinState.stackHMM.Vu.Ernst2022 repeatElements CpG.island Brown_rat.corCalibration Human.corCalibration Mouse.corCalibration Rhesus_macaque.corCalibration cg00101675_BC21
cg00101675
Ppp2r5e
Ppp2r5e_fiveUTR
12
75515719
75515768
75515719
75515720
+
CGTGTCCATGAAGTCAAAAATGACACAGCACTGCTGAAGTTTCTTTAGGA
5' UTR
12
75450881
75596200
145320
2
Ppp2r5e-201
80432
Ppp2r5e-201;Ppp2r5e-205;Ppp2r5e-202;Ppp2r5e-203;Ppp2r5e-204
Ppp2r5e;Ppp2r5e;Ppp2r5e;Ppp2r5e;Ppp2r5e
0;0;0;0;0
TRUE
FALSE
FALSE
TRUE
FALSE
TRUE
TRUE
FALSE
FALSE
fiveUTR
26932
ENSMUSG00000021051
conserved gene but different region
+
TRUE
TxEnh3
NA
no
0.998823279
0.668701058
0.997216418
0.976245013
cg00116289_BC21
cg00116289
Zfr
Zfr_Exon
15
12170802
12170851
12170850
12170851
-
TCAATCCATTTTAGATGTAACCTCGGGTATGGTGAAAGACCCACCGGACG
"Exon (Zfr-201/Zfr
exon 16 of 20)"
15
12117831
12185683
67853
1
Zfr-201
52971
Zfr-201;Zfr-207;Zfr-208;Zfr-209;Zfr-206
Zfr;Zfr;Zfr;Zfr;Zfr
0;0;0;0;0
TRUE
FALSE
FALSE
FALSE
FALSE
TRUE
TRUE
FALSE
FALSE
Exon
22763
ENSMUSG00000022201
conserved gene and region
+
TRUE
NA
NA
no
0.996236159
0.996941278
0.999135375
cg00211372_TC21
cg00211372
Rbmx
Rbmx_threeUTR
X
57387384
57387433
57387384
57387385
+
CGTGAGTTACCTGCAGGGTCAATGGTCAGGTAATATGGCAACACTATAAA
3' UTR
20
57383530
57392981
9452
2
Rbmx-205
5548
Rbmx-205;Rbmx-201;Rbmx-203;Rbmx-202;Rbmx-206;Rbmx-204
Rbmx;Rbmx;Rbmx;Rbmx;Rbmx;Rbmx
0;0;0;0;0;5364
TRUE
FALSE
FALSE
FALSE
TRUE
TRUE
TRUE
FALSE
FALSE
threeUTR
19655
ENSMUSG00000031134
mapped to different genes
NA
TRUE
NA
NA
yes
0.915102602
0.731385329
0.939051862
0.982045502
cg00531009_BC21
cg00531009
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
NA
no
0.899874283
0.76490978
0.952117493
0.909108226
cg00896209_TC21
cg00896209
Clk2
Clk2_Exon
3
89169680
89169729
89169680
89169681
-
CGGGGACTGGCTACAAGAGCGATGTACAAGCCAAATCGTAACAATCCTAT
"Exon (Clk2-202/Clk2
exon 4 of 13)"
3
89164795
89176921
12127
1
Clk2-202
4885
Clk2-202;Clk2-210;Clk2-201;Clk2-209;Clk2-207;Clk2-203;Clk2-204;Clk2-206;Clk2-211;Clk2-205
Clk2;Clk2;Clk2;Clk2;Clk2;Clk2;Clk2;Clk2;Clk2;Clk2
0;4863;0;0;0;0;0;0;0;-4226
TRUE
FALSE
FALSE
FALSE
FALSE
TRUE
TRUE
FALSE
FALSE
Exon
12748
ENSMUSG00000068917
conserved gene and region
+
TRUE
TxEx2
NA
yes
0.942394722
0.974107544
0.983812899
cg00910419_BC21
cg00910419
Bcl11a
Bcl11a_fiveUTR
11
24078020
24078069
24078068
24078069
-
CCCATGTTTTGTGTGTCTCTGTCCATCCAGACTCCTGACGTTCAAGTTCG
Promoter (<=1kb)
11
24078056
24173194
95139
1
Bcl11a-201
0
A830031A19Rik-201;Bcl11a-201;Bcl11a-203;Bcl11a-205;Bcl11a-202;Bcl11a-204
A830031A19Rik;Bcl11a;Bcl11a;Bcl11a;Bcl11a;Bcl11a
0;0;0;0;0;0
TRUE
FALSE
TRUE
TRUE
FALSE
TRUE
FALSE
FALSE
FALSE
fiveUTR
14025
ENSMUSG00000000861
conserved gene and region
+
TRUE
NA
NA
no
0.936236452
0.918904191
0.979299402
0.91186119
cg00920372_BC21
cg00920372
Btrc
Btrc_Exon
19
45330034
45330083
45330082
45330083
+
GGTGACATATCTCTCTTATTGCCCGAATGTAACACACCATCTAATTTACG
"Exon (Gm28578-209/Gm28578-209
exon 6 of 7)"
19
45363734
45507736
144003
1
Btrc-204
-33651
NA
NA
NA
TRUE
FALSE
FALSE
FALSE
FALSE
TRUE
TRUE
FALSE
FALSE
Exon
12234
ENSMUSG00000025217
conserved gene and region
+
TRUE
ReprPC5
NA
yes
0.984502285
0.999100775
0.999938778
cg01340195_BC21
cg01340195
Tbc1d5
Tbc1d5_Intron
17
51048780
51048829
51048828
51048829
-
TCTAAATCAATAATCAGCACAGCATGCTTCATTAACAGTGACCAATCACG
"Intron (Tbc1d5-201/Tbc1d5
intron 2 of 21)"
17
50733124
51179168
446045
2
Tbc1d5-201
130339
Tbc1d5-201;Tbc1d5-207;Tbc1d5-205;Tbc1d5-208;Tbc1d5-203;Tbc1d5-202;Tbc1d5-206;Tbc1d5-209
Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5;Tbc1d5
0;0;0;0;0;0;0;0
TRUE
FALSE
FALSE
FALSE
FALSE
FALSE
TRUE
FALSE
FALSE
Intron
72238
ENSMUSG00000023923
conserved gene and region
+
TRUE
EnhA6
NA
no
0.983456223
0.972236071
0.993368628
cg01683044_BC21
cg01683044
Hoxc5
Hoxc5_Intron
15
102998147
102998196
102998195
102998196
-
TCACAAGTTGGATTGGCCACAAGAAGTCATGTGGATTCCATCCATGAACG
"Intron (Hoxc5-202/Hoxc5
intron 1 of 1)"
15
102967443
103015676
48234
1
Hoxc5-202
30704
Hoxc5-202;Hoxc6-202;Hoxc6-203;Hoxc8-201;Hoxc8-202
Hoxc5;Hoxc6;Hoxc6;Hoxc8;Hoxc8
0;0;0;0;0
TRUE
FALSE
FALSE
FALSE
FALSE
FALSE
TRUE
FALSE
FALSE
Intron
15424
ENSMUSG00000022485
conserved gene but different region
+
TRUE
BivProm4
NA
no
0.978218129
0.967536852
0.999052611
cg02153806_BC21
cg02153806
Dlx6
Dlx6_Exon
6
6869356
6869405
6869404
6869405
+
GTCTTCAGAATGGTTTAAAACCGATCAGTCTTGTCATTTTCTAGCATTCG
"Exon (Dlx6os1-201/Dlx6os1-201
exon 2 of 3)"
6
6863798
6865430
1633
1
Dlx6-204
5558
Dlx6-203;Dlx6-202;Dlx6-201;Dlx6-204
Dlx6;Dlx6;Dlx6;Dlx6
0;0;0;0
TRUE
FALSE
FALSE
FALSE
FALSE
TRUE
FALSE
FALSE
FALSE
Exon
13396
ENSMUSG00000029754
mapped to different genes
+
TRUE
ReprPC1
NA
no
0.986441406
0.934056314
0.974226175
cg02176373_BC21
cg02176373
Ebf3
Ebf3_fiveUTR
7
137314192
137314241
137314240
137314241
+
GTTGTTGTTGTTTGCAGGCGCGCTCAACGTGGTGTCATCCTAGCCAGGCG
Promoter (<=1kb)
7
137193673
137314445
120773
2
Ebf3-204
204
Ebf3-204;Ebf3-201;Ebf3-202;Ebf3-203;Ebf3-208;Ebf3-206
Ebf3;Ebf3;Ebf3;Ebf3;Ebf3;Ebf3
0;0;0;0;0;0
TRUE
FALSE
TRUE
TRUE
FALSE
TRUE
FALSE
FALSE
FALSE
fiveUTR
13593
ENSMUSG00000010476
conserved gene but different region
+
TRUE
BivProm1
NA
yes
0.902322284
0.925238322
0.93821557
0.865241192
cg02187860_TC22
cg02187860
Mvb12b
Mvb12b_Intron
2
33941649
33941698
33941649
33941650
-
CGCAATCAGTTACTGCATTACAAGGCCGGCGATGAGCTTTTAAATCTTGG
"Intron (Gm13403-201/Gm13403-201
intron 1 of 1)"
2
33729953
33887946
157994
2
Mvb12b-201
-53752
NA
NA
NA
TRUE
FALSE
FALSE
FALSE
FALSE
FALSE
TRUE
FALSE
FALSE
Intron
72543
ENSMUSG00000038740
mapped to different genes
NA
TRUE
EnhA6
NA
no
0.948610266
0.782196466
0.913801589
cg02529685_TC11
cg02529685
Zfhx4
Zfhx4_Exon
3
5242361
5242410
5242409
5242410
-
TTAGCAGGAGTTGGTCCTGTGTTGCACAGTTTCCGTGTCTATGATCTCCG
"Exon (Zfhx4-203/Zfhx4
exon 2 of 11)"
3
5218526
5413165
194640
1
Zfhx4-203
23835
Zfhx4-203;Zfhx4-202;Zfhx4-201;Zfhx4-204;Zfhx4-205
Zfhx4;Zfhx4;Zfhx4;Zfhx4;Zfhx4
0;0;0;0;0
TRUE
FALSE
FALSE
FALSE
FALSE
TRUE
TRUE
FALSE
FALSE
Exon
80892
ENSMUSG00000025255
conserved gene and region
+
TRUE
TxEnh5
NA
no
0.972934528
0.991723209
0.995953629
cg02574073_BC11
cg02574073
Hoxb6
Hoxb6_Promoter
11
96292383
96292432
96292431
96292432
+
GTTTATGAGTGGTTGAATCCAGCGATTGGCCGGCGCCGGTCATGTGGCCG
Promoter (<=1kb)
11
96292476
96301569
9094
1
Hoxb6-202
-44
Hoxb6-202;Hoxb7-201;Hoxb7-202
Hoxb6;Hoxb7;Hoxb7
0;0;3668
TRUE
FALSE
TRUE
FALSE
FALSE
FALSE
TRUE
FALSE
FALSE
Promoter
15414
ENSMUSG00000000690
mapped to different genes
+
TRUE
BivProm4
NA
yes
0.919004019
0.927113808
0.915737444
0.88134488
cg02955020_BC22
cg02955020
Pbx1
Pbx1_Exon
1
168185018
168185067
168185018
168185019
-
CGCTCATGAACAAATCTCCAGAGTTTGACATGTTAAAAGAACTGGAAGAA
"Exon (Pbx1-205/Pbx1
exon 7 of 9)"
1
168119364
168432270
312907
2
Pbx1-208
247203
Pbx1-208;Pbx1-205;Pbx1-206;Pbx1-201;Pbx1-202
Pbx1;Pbx1;Pbx1;Pbx1;Pbx1
0;0;0;0;0
TRUE
FALSE
FALSE
FALSE
FALSE
TRUE
TRUE
FALSE
FALSE
Exon
18514
ENSMUSG00000052534
conserved gene and region
-
TRUE
Tx5
NA
no
0.980793642
0.826269717
0.999727632
cg03237342_BC21
cg03237342
Tcf12
Tcf12_Intron
9
71976205
71976254
71976205
71976206
-
CGCAGGTGCAACACAGCCGTGTAGCAACACACCATTTCACAGTCTATCGG
"Intron (Tcf12-202/Tcf12
intron 5 of 20)"
9
71842688
72111847
269160
2
Tcf12-202
135593
Tcf12-202;Tcf12-201;Tcf12-220;Tcf12-221;Tcf12-218;Tcf12-216;Tcf12-208;Tcf12-210;Tcf12-214;Tcf12-205;Tcf12-203;Tcf12-211;Tcf12-204;Tcf12-212
Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12;Tcf12
0;0;0;0;0;0;0;0;0;0;0;0;0;0
TRUE
FALSE
FALSE
FALSE
FALSE
FALSE
TRUE
FALSE
FALSE
Intron
21406
ENSMUSG00000032228
conserved gene and region
-
TRUE
TxEnh7
NA
no
0.954762134
0.996269531
0.986922513
cg03678139_BC21
cg03678139
Foxo6
Foxo6_Intron
4
120282530
120282579
120282578
120282579
-
GTTAAAAATAACCGTCTCATCTCTTTAAATTAGTCTGTCTGCAATTACCG
"Intron (Foxo6-201/Foxo6
intron 1 of 1)"
4
120267079
120287349
20271
2
Foxo6-201
4770
Foxo6-201
Foxo6
0
TRUE
FALSE
FALSE
FALSE
FALSE
FALSE
TRUE
FALSE
FALSE
Intron
329934
ENSMUSG00000052135
conserved gene and region
+
TRUE
BivProm1
NA
yes
0.884059672
0.938755807
0.943249875
cg04056615_TC22
cg04056615
Celf3
Celf3_Exon
3
94484297
94484346
94484297
94484298
-
CGTTGCCACGGAGACTGGGCATCTGCTCCCTTTGTGCTGCCCGAGTGCCT
Promoter (<=1kb)
3
94484327
94492193
7867
1
Celf3-211
0
Celf3-214;Celf3-208;Celf3-204;Celf3-215;Celf3-201;Celf3-213;Celf3-212;Celf3-207;Celf3-206;Celf3-211;Celf3-205;Celf3-209;Celf3-210;Celf3-202;Celf3-203;Riiad1-202
Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Celf3;Riiad1
0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0
TRUE
FALSE
TRUE
FALSE
FALSE
TRUE
TRUE
FALSE
FALSE
Exon
78784
ENSMUSG00000028137
conserved gene but different region
-
TRUE
DNase1
NA
yes
0.986146126
0.99047615
0.999193635
0.961230046
cg04112554_BC21
cg04112554
Tcf4
Tcf4_fiveUTR
18
69593408
69593457
69593408
69593409
-
CGGCCATATGGGAAAATGCAACTGAAGGAATTGTTGTGAAAAAAGGGACA
Promoter (<=1kb)
18
69593413
69675730
82318
1
Tcf4-222
0
Tcf4-201;Tcf4-207;Tcf4-240;Tcf4-254;Tcf4-246;Tcf4-206;Tcf4-202;Tcf4-257;Tcf4-232;Tcf4-248;Tcf4-231;Tcf4-205;Tcf4-253;Tcf4-238;Tcf4-249;Tcf4-219;Tcf4-227;Tcf4-250;Tcf4-229;Tcf4-260;Tcf4-226;Tcf4-216;Tcf4-256;Tcf4-230;Tcf4-221;Tcf4-234;Tcf4-258;Tcf4-217;Tcf4-247;Tcf4-252;Tcf4-218;Tcf4-243;Tcf4-237;Tcf4-239;Tcf4-262;Tcf4-223;Tcf4-212;Tcf4-204;Tcf4-225;Tcf4-222;Tcf4-261;Tcf4-255;Tcf4-203;Tcf4-241;Tcf4-236;Tcf4-228;Tcf4-220;Tcf4-242
Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4;Tcf4
0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0;0
TRUE
FALSE
TRUE
TRUE
FALSE
TRUE
TRUE
FALSE
FALSE
fiveUTR
21413
ENSMUSG00000053477
conserved gene and region
+
TRUE
TSS1
NA
yes
0.963095009
0.910134759
0.985273622
0.969293382
cg04138506_TC11
cg04138506
Hoxc4
Hoxc4_Exon
15
103034850
103034899
103034850
103034851
+
CGGGATTCCAGCATCACCACCAGGAGCTGTACCCACCACCGCCTCCGCGC
"Exon (Hoxc4-202/Hoxc4
exon 2 of 4)"
15
103018934
103036405
17472
1
Hoxc4-202
15916
Hoxc4-202;Hoxc4-201
Hoxc4;Hoxc4
0;0
TRUE
FALSE
FALSE
FALSE
FALSE
TRUE
FALSE
FALSE
FALSE
Exon
15423
ENSMUSG00000075394
conserved gene and region
-
TRUE
BivProm1
NA
yes
0.94593827
0.943503382
0.964672965
330948 139749 Kbytes .Supplementary data files not provided
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