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Status
Public on Dec 07, 2005
Title
Takara CyanoChip v.2.0
Technology type
spotted DNA/cDNA
Distribution
custom-commercial
Organism
Synechocystis sp. PCC 6803 Manufacturer
TAKARA
Manufacture protocol
see manufacturer's web site
Description
IntelliGene® Cyano CHIP Ver.2.0 is a product which is arrayed and immobilized with the DNA fragments of ORF (Open Reading Frame) derived from Synechocystis sp. PCC6803, a photosynthetic gram-negative bacterium on a slide glass. Approximately 2,954 DNA fragments are arrayed. Further detailed information about ORF name, Genetic symbol and Gene name in Array list can be obtained from CyanoBase (http://www.kazusa.or.jp/cyano/ index.html) in Kazusa DNA Research Institute.
Web link
http://www.takara-bio.co.jp/ Submission date
Nov 30, 2005
Last update date
Dec 07, 2005
Contact name
Franck Chauvat
E-mail
franck.chauvat@cea.fr Phone
33 1 69 08 78 11
Organization name
CEA Saclay
Department
DSV/DBJC
Lab
LSOC
Street address
-
City
Gif sur yvette CEDEX
ZIP/Postal code
91191
Country
France
Samples (36)
GSM85528 , GSM85529 , GSM85530 , GSM85531 , GSM85532 , GSM85533
GSM85534 ,
GSM85535 ,
GSM85536 ,
GSM85537 ,
GSM85670 ,
GSM85671 ,
GSM85672 ,
GSM85673 ,
GSM85674 ,
GSM85675 ,
GSM85676 ,
GSM85677 ,
GSM85678 ,
GSM85679 ,
GSM85680 ,
GSM85681 ,
GSM85682 ,
GSM85683 ,
GSM85769 ,
GSM85770 ,
GSM102931 ,
GSM102932 ,
GSM102933 ,
GSM102941 ,
GSM102953 ,
GSM102954 ,
GSM102955 ,
GSM102956 ,
GSM102957 ,
GSM102958 Series (10)
GSE3703 Synechocystis PCC6803 time course responses to H2O2 3mM.
GSE3715 Synechocystis PCC6803 time course responses to iron (ferric ammonium citrate, 17 mM.
GSE3716 Synechocystis PCC6803 time course responses to zinc (ZnSO4, 776 microM.
GSE3717 Synechocystis PCC6803 dose responses to iron starvation (96h).
GSE3718 Synechocystis PCC6803 time course responses to cadmium (CdSO4, 50 microM, 300 min.
GSE3719 knock-out Slr1738 mutant strain analysis exposed to cadmium (50 microM).
GSE3755 Synechocystis PCC6803 Stress Response
GSE4604 Time course response of Synechocystis PCC 6803 to dehydration/desiccation
GSE4606 Time course response of Synechocystis PCC 6803 to UV irradiation
GSE4613 Time course response of Synechocystis PCC 6803 to dehydration/desiccation and UV irradiation
Data table header descriptions ID ORF Open Reading Frame, as described in CyanoBase (www.kazusa.or.jp/cyano/cyano.html) "
Metarow number of subarray row
Metacolumn number of subarray column
Sub-Grid Row number of row within subarray
Sub-Grid Column number of column within subarray
description gene description
Data table ID ORF Metarow Metacolumn Sub-Grid Row Sub-Grid Column description 1
sll0517 1
1
1
27
RNA binding protein
2
slr0192 1
1
1
29
3
slr0443 1
1
1
31
4
slr1376 1
1
1
33
5
sll0780 1
1
1
45
6
slr0815 1
1
1
47
7
slr1037 1
1
1
49
regulatory components of sensory transduction system
8
sll1769 1
1
1
50
9
sll1813 1
1
1
51
50S ribosomal protein L15
10
sml0005 1
1
1
52
photosystem II PsbK protein
11
slr0500 1
1
1
53
imidazoleglycerol-phosphate dehydratase
12
sml0006 1
1
1
54
50S ribosomal protein L36
13
slr0051 1
1
1
55
carbonic anhydrase
14
ssl2138 1
1
1
56
15
sll0625 1
1
1
57
16
sll1219 1
1
1
58
17
sll1744 1
1
1
59
50S ribosomal protein L1
18
slr0249 1
1
1
60
19
slr1197 1
1
1
61
hypothetical protein
20
ssl0707 1
1
2
1
nitrogen regulatory protein P-II
2950 107 Kbytes .Supplementary data files not provided
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