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Platform GPL3214 Query DataSets for GPL3214
Status Public on Dec 07, 2005
Title Takara CyanoChip v.2.0
Technology type spotted DNA/cDNA
Distribution custom-commercial
Organism Synechocystis sp. PCC 6803
Manufacturer TAKARA
Manufacture protocol see manufacturer's web site
 
Description IntelliGene® Cyano CHIP Ver.2.0 is a product which is arrayed and immobilized with the DNA fragments of ORF (Open Reading Frame) derived from Synechocystis sp. PCC6803, a photosynthetic gram-negative bacterium on a slide glass. Approximately 2,954 DNA fragments are arrayed. Further detailed information about ORF name, Genetic symbol and Gene name in Array list can be obtained from CyanoBase (http://www.kazusa.or.jp/cyano/ index.html) in Kazusa DNA Research Institute.
 
Web link http://www.takara-bio.co.jp/
Submission date Nov 30, 2005
Last update date Dec 07, 2005
Contact name Franck Chauvat
E-mail franck.chauvat@cea.fr
Phone 33 1 69 08 78 11
Organization name CEA Saclay
Department DSV/DBJC
Lab LSOC
Street address -
City Gif sur yvette CEDEX
ZIP/Postal code 91191
Country France
 
Samples (36) GSM85528, GSM85529, GSM85530, GSM85531, GSM85532, GSM85533 
Series (10)
GSE3703 Synechocystis PCC6803 time course responses to H2O2 3mM.
GSE3715 Synechocystis PCC6803 time course responses to iron (ferric ammonium citrate, 17 mM.
GSE3716 Synechocystis PCC6803 time course responses to zinc (ZnSO4, 776 microM.

Data table header descriptions
ID
ORF Open Reading Frame, as described in CyanoBase (www.kazusa.or.jp/cyano/cyano.html) "
Metarow number of subarray row
Metacolumn number of subarray column
Sub-Grid Row number of row within subarray
Sub-Grid Column number of column within subarray
description gene description

Data table
ID ORF Metarow Metacolumn Sub-Grid Row Sub-Grid Column description
1 sll0517 1 1 1 27 RNA binding protein
2 slr0192 1 1 1 29
3 slr0443 1 1 1 31
4 slr1376 1 1 1 33
5 sll0780 1 1 1 45
6 slr0815 1 1 1 47
7 slr1037 1 1 1 49 regulatory components of sensory transduction system
8 sll1769 1 1 1 50
9 sll1813 1 1 1 51 50S ribosomal protein L15
10 sml0005 1 1 1 52 photosystem II PsbK protein
11 slr0500 1 1 1 53 imidazoleglycerol-phosphate dehydratase
12 sml0006 1 1 1 54 50S ribosomal protein L36
13 slr0051 1 1 1 55 carbonic anhydrase
14 ssl2138 1 1 1 56
15 sll0625 1 1 1 57
16 sll1219 1 1 1 58
17 sll1744 1 1 1 59 50S ribosomal protein L1
18 slr0249 1 1 1 60
19 slr1197 1 1 1 61 hypothetical protein
20 ssl0707 1 1 2 1 nitrogen regulatory protein P-II

Total number of rows: 2950

Table truncated, full table size 107 Kbytes.






Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

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