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Platform GPL32 Query DataSets for GPL32
Status Public on Jan 17, 2002
Title [MG_U74A] Affymetrix Murine Genome U74A Array
Technology type in situ oligonucleotide
Distribution commercial
Organism Mus musculus
Manufacturer Affymetrix
Manufacture protocol see manufacturer's web site

The MG-U74 version 1 set comprises three arrays representing over 36,000 mouse genes and ESTs.

 
Description Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

June 03, 2009: annotation table updated with netaffx build 28
June 21, 2012: annotation table updated with netaffx build 32
July 06, 2016: annotation table updated with netaffx build 35
 
Web link http://www.affymetrix.com/support/technical/byproduct.affx?product=mgu74
http://www.affymetrix.com/analysis/index.affx
Submission date Jan 17, 2002
Last update date Jul 06, 2016
Organization Affymetrix, Inc.
E-mail geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (302) GSM1232, GSM1238, GSM1244, GSM1250, GSM1268, GSM1274 
Series (24)
GSE75 FVB Benchmark Set for Cardiac Development, Maturation, and Aging
GSE76 Pressure-Overload Induced Cardiac Hypertrophy
GSE97 Large-scale analysis of the mouse transcriptome

Data table header descriptions
ID Affymetrix Probe Set ID
GB_ACC GenBank Accession Number
SPOT_ID identifies controls
Species Scientific Name The genus and species of the organism represented by the probe set.
Annotation Date The date that the annotations for this probe array were last updated. It will generally be earlier than the date when the annotations were posted on the Affymetrix web site.
Sequence Type
Sequence Source The database from which the sequence used to design this probe set was taken.
Target Description
Representative Public ID The accession number of a representative sequence. Note that for consensus-based probe sets, the representative sequence is only one of several sequences (sequence sub-clusters) used to build the consensus sequence and it is not directly used to derive the probe sequences. The representative sequence is chosen during array design as a sequence that is best associated with the transcribed region being interrogated by the probe set. Refer to the "Sequence Source" field to determine the database used.
Gene Title Title of Gene represented by the probe set.
Gene Symbol A gene symbol, when one is available (from UniGene).
ENTREZ_GENE_ID Entrez Gene Database UID
RefSeq Transcript ID References to multiple sequences in RefSeq. The field contains the ID and Description for each entry, and there can be multiple entries per ProbeSet.
Gene Ontology Biological Process Gene Ontology Consortium Biological Process derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Cellular Component Gene Ontology Consortium Cellular Component derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".
Gene Ontology Molecular Function Gene Ontology Consortium Molecular Function derived from LocusLink. Each annotation consists of three parts: "Accession Number // Description // Evidence". The description corresponds directly to the GO ID. The evidence can be "direct", or "extended".

Data table
ID GB_ACC SPOT_ID Species Scientific Name Annotation Date Sequence Type Sequence Source Target Description Representative Public ID Gene Title Gene Symbol ENTREZ_GENE_ID RefSeq Transcript ID Gene Ontology Biological Process Gene Ontology Cellular Component Gene Ontology Molecular Function
100000_at AI846313 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl AI846313:UI-M-AK1-aez-h-06-0-UI.s1 Mus musculus cDNA, 3' end /clone=UI-M-AK1-aez-h-06-0-UI /clone_end=3' /gb=AI846313 /gi=5490219 /ug=Mm.4511 /len=411 /STRA=rev AI846313 transmembrane protein 168 Tmem168 101118 NM_028990 /// XM_006504952 /// XM_006504953 /// XM_006504954 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0030133 // transport vesicle // not recorded
100001_at M18228 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl M18228:CD3 antigen, gamma polypeptide /cds=(104,652) /gb=M18228 /gi=192497 /ug=Mm.4513 /len=670 /STRA=for M18228 CD3 antigen, gamma polypeptide Cd3g 12502 NM_009850 0007163 // establishment or maintenance of cell polarity // not recorded /// 0007166 // cell surface receptor signaling pathway // not recorded /// 0015031 // protein transport // not recorded /// 0070228 // regulation of lymphocyte apoptotic process // not recorded 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0042105 // alpha-beta T cell receptor complex // inferred from direct assay 0004888 // transmembrane signaling receptor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0046982 // protein heterodimerization activity // not recorded
100002_at X70393 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl X70393:Inter-alpha trypsin inhibitor, heavy chain 3 /cds=(4,2664) /gb=X70393 /gi=695635 /ug=Mm.4517 /len=2775 /STRA=for X70393 inter-alpha trypsin inhibitor, heavy chain 3 Itih3 16426 NM_008407 /// XM_006518585 /// XM_006518586 /// XM_006518587 /// XM_006518588 /// XR_383139 /// XR_383140 0010466 // negative regulation of peptidase activity // inferred from electronic annotation /// 0010951 // negative regulation of endopeptidase activity // inferred from electronic annotation /// 0030212 // hyaluronan metabolic process // inferred from electronic annotation 0005576 // extracellular region // inferred from electronic annotation 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation /// 0030414 // peptidase inhibitor activity // inferred from electronic annotation
100003_at D38216 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl D38216:Mouse RyR1 mRNA for skeletal muscle ryanodine receptor, partial cds /cds=(0,371) /gb=D38216 /gi=1030707 /ug=Mm.4519 /len=486 /STRA=for D38216 ryanodine receptor 1, skeletal muscle Ryr1 20190 NM_009109 /// XM_006539683 /// XM_006539684 /// XM_006539685 /// XM_006539686 /// XM_006539687 /// XM_006539688 /// XM_006539689 /// XM_006539690 /// XM_006539691 /// XM_006539692 /// XR_391051 0001666 // response to hypoxia // not recorded /// 0003151 // outflow tract morphogenesis // inferred from mutant phenotype /// 0006810 // transport // inferred from electronic annotation /// 0006811 // ion transport // inferred from electronic annotation /// 0006816 // calcium ion transport // inferred from direct assay /// 0006816 // calcium ion transport // not recorded /// 0006874 // cellular calcium ion homeostasis // inferred from electronic annotation /// 0006936 // muscle contraction // inferred from direct assay /// 0006936 // muscle contraction // inferred from mutant phenotype /// 0006937 // regulation of muscle contraction // traceable author statement /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0014808 // release of sequestered calcium ion into cytosol by sarcoplasmic reticulum // inferred from mutant phenotype /// 0031000 // response to caffeine // not recorded /// 0034765 // regulation of ion transmembrane transport // inferred from direct assay /// 0043588 // skin development // inferred from mutant phenotype /// 0043931 // ossification involved in bone maturation // inferred from mutant phenotype /// 0048741 // skeletal muscle fiber development // inferred from mutant phenotype /// 0051209 // release of sequestered calcium ion into cytosol // inferred from mutant phenotype /// 0051209 // release of sequestered calcium ion into cytosol // not recorded /// 0051480 // cytosolic calcium ion homeostasis // not recorded /// 0055085 // transmembrane transport // inferred from electronic annotation /// 0070296 // sarcoplasmic reticulum calcium ion transport // not recorded /// 0070588 // calcium ion transmembrane transport // inferred from mutant phenotype /// 0071313 // cellular response to caffeine // inferred from mutant phenotype 0005622 // intracellular // inferred from mutant phenotype /// 0005623 // cell // inferred from mutant phenotype /// 0005737 // cytoplasm // not recorded /// 0005790 // smooth endoplasmic reticulum // inferred from direct assay /// 0005886 // plasma membrane // not recorded /// 0005938 // cell cortex // not recorded /// 0016020 // membrane // inferred from direct assay /// 0016021 // integral component of membrane // inferred from electronic annotation /// 0016529 // sarcoplasmic reticulum // inferred from direct assay /// 0016529 // sarcoplasmic reticulum // not recorded /// 0030314 // junctional membrane complex // inferred from direct assay /// 0030315 // T-tubule // inferred from direct assay /// 0031234 // extrinsic component of cytoplasmic side of plasma membrane // not recorded /// 0031674 // I band // not recorded /// 0033017 // sarcoplasmic reticulum membrane // inferred from direct assay /// 0033017 // sarcoplasmic reticulum membrane // not recorded /// 0042383 // sarcolemma // not recorded /// 0043234 // protein complex // inferred from direct assay /// 0070062 // extracellular vesicular exosome // not recorded 0002020 // protease binding // inferred from physical interaction /// 0005216 // ion channel activity // inferred from electronic annotation /// 0005219 // ryanodine-sensitive calcium-release channel activity // inferred from mutant phenotype /// 0005219 // ryanodine-sensitive calcium-release channel activity // not recorded /// 0005245 // voltage-gated calcium channel activity // inferred from direct assay /// 0005262 // calcium channel activity // inferred from mutant phenotype /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical interaction /// 0005516 // calmodulin binding // inferred from electronic annotation /// 0019899 // enzyme binding // inferred from physical interaction
100004_at AW120890 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl AW120890:UI-M-BH2.3-aob-a-12-0-UI.s1 Mus musculus cDNA, 3' end /clone=UI-M-BH2.3-aob-a-12-0-UI /clone_end=3' /gb=AW120890 /gi=6096223 /ug=Mm.45194 /len=364 /STRA=for AW120890 integrator complex subunit 7 Ints7 77065 NM_178632 /// XM_006497213 /// XM_006497214 /// XM_006497215 0000077 // DNA damage checkpoint // not recorded /// 0006974 // cellular response to DNA damage stimulus // inferred from electronic annotation /// 0016180 // snRNA processing // not recorded /// 0071479 // cellular response to ionizing radiation // not recorded 0005634 // nucleus // inferred from electronic annotation /// 0005694 // chromosome // not recorded /// 0032039 // integrator complex // not recorded 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation
100005_at X92346 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl X92346:Tnf receptor associated factor 4 /cds=(130,1542) /gb=X92346 /gi=1041445 /ug=Mm.4521 /len=2043 /STRA=for X92346 TNF receptor associated factor 4 Traf4 22032 NM_009423 /// XM_006533156 0006915 // apoptotic process // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic annotation /// 0007250 // activation of NF-kappaB-inducing kinase activity // inferred from electronic annotation /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007585 // respiratory gaseous exchange // inferred from mutant phenotype /// 0016567 // protein ubiquitination // inferred from electronic annotation /// 0030323 // respiratory tube development // inferred from mutant phenotype /// 0042981 // regulation of apoptotic process // inferred from electronic annotation /// 0045860 // positive regulation of protein kinase activity // not recorded /// 0046330 // positive regulation of JNK cascade // not recorded /// 0090073 // positive regulation of protein homodimerization activity // not recorded 0005634 // nucleus // not recorded /// 0005737 // cytoplasm // not recorded /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic annotation /// 0005923 // tight junction // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0030054 // cell junction // inferred from electronic annotation /// 0048471 // perinuclear region of cytoplasm // inferred from electronic annotation 0004842 // ubiquitin-protein transferase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0019901 // protein kinase binding // inferred from physical interaction /// 0031625 // ubiquitin protein ligase binding // not recorded /// 0031996 // thioesterase binding // not recorded /// 0046872 // metal ion binding // inferred from electronic annotation /// 0050699 // WW domain binding // not recorded
100006_at D21253 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl D21253:Cadherin 11 /cds=(269,2659) /gb=D21253 /gi=994774 /ug=Mm.4525 /len=3489 /STRA=for D21253 cadherin 11 Cdh11 12552 NM_009866 /// XM_006530623 /// XM_006530624 /// XM_006530625 /// XM_006530626 0007155 // cell adhesion // inferred from electronic annotation /// 0007156 // homophilic cell adhesion // inferred from electronic annotation /// 0021957 // corticospinal tract morphogenesis // inferred from genetic interaction 0005737 // cytoplasm // inferred from direct assay /// 0005886 // plasma membrane // inferred from direct assay /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation 0005509 // calcium ion binding // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation
100007_at AI837573 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl AI837573:UI-M-AL0-abs-g-06-0-UI.s1 Mus musculus cDNA, 3' end /clone=UI-M-AL0-abs-g-06-0-UI /clone_end=3' /gb=AI837573 /gi=5471786 /ug=Mm.4532 /len=293 /STRA=for AI837573 interferon regulatory factor 2 binding protein 1 Irf2bp1 272359 NM_178757 0000122 // negative regulation of transcription from RNA polymerase II promoter // not recorded /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation 0005634 // nucleus // not recorded 0003714 // transcription corepressor activity // not recorded /// 0005515 // protein binding // inferred from electronic annotation /// 0008134 // transcription factor binding // not recorded /// 0008766 // UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity // inferred from electronic annotation /// 0016874 // ligase activity // inferred from electronic annotation /// 0018169 // ribosomal S6-glutamic acid ligase activity // inferred from electronic annotation /// 0043773 // coenzyme F420-0 gamma-glutamyl ligase activity // inferred from electronic annotation /// 0043774 // coenzyme F420-2 alpha-glutamyl ligase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation /// 0070735 // protein-glycine ligase activity // inferred from electronic annotation /// 0070736 // protein-glycine ligase activity, initiating // inferred from electronic annotation /// 0070737 // protein-glycine ligase activity, elongating // inferred from electronic annotation /// 0070738 // tubulin-glycine ligase activity // inferred from electronic annotation /// 0070739 // protein-glutamic acid ligase activity // inferred from electronic annotation /// 0070740 // tubulin-glutamic acid ligase activity // inferred from electronic annotation
100008_at AW214587 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl AW214587:uo49c11.x1 Mus musculus cDNA, 3' end /clone=IMAGE-2645876 /clone_end=3' /gb=AW214587 /gi=6521073 /ug=Mm.4538 /len=421 /STRA=for AW214587 dynein, axonemal, heavy chain 14 Dnah14 240960 NM_172846 /// XM_006497100 /// XM_006497101 /// XM_006497102 /// XM_006497103 /// XM_006497104 /// XM_006497105 /// XM_006497106 /// XM_006497107 /// XM_006497108 /// XM_006497109 /// XM_006497110 /// XM_006497111 /// XM_006497112 /// XM_006497113 /// XM_006543580 /// XM_006543581 /// XM_006543582 /// XM_006543583 /// XM_006543584 /// XM_006543585 /// XM_006543586 /// XM_006543587 /// XM_006543588 /// XM_006543589 /// XM_006543590 /// XM_006543591 /// XM_006543592 /// XM_006543593 /// XR_373756 /// XR_399167
100009_r_at X94127 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl X94127:SRY-box containing gene 2 /cds=(0,959) /gb=X94127 /gi=1209429 /ug=Mm.4541 /len=960 /STRA=for X94127 SRY (sex determining region Y)-box 2 Sox2 20674 NM_011443 0000122 // negative regulation of transcription from RNA polymerase II promoter // inferred from genetic interaction /// 0001649 // osteoblast differentiation // not recorded /// 0001654 // eye development // inferred from electronic annotation /// 0001708 // cell fate specification // inferred from mutant phenotype /// 0001714 // endodermal cell fate specification // not recorded /// 0002052 // positive regulation of neuroblast proliferation // inferred from mutant phenotype /// 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from direct assay /// 0006355 // regulation of transcription, DNA-templated // not recorded /// 0006357 // regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0006366 // transcription from RNA polymerase II promoter // not recorded /// 0007050 // cell cycle arrest // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007605 // sensory perception of sound // inferred from mutant phenotype /// 0009611 // response to wounding // inferred from electronic annotation /// 0010033 // response to organic substance // inferred from direct assay /// 0010468 // regulation of gene expression // not recorded /// 0019827 // stem cell maintenance // inferred from mutant phenotype /// 0021879 // forebrain neuron differentiation // inferred from mutant phenotype /// 0021983 // pituitary gland development // inferred from electronic annotation /// 0021984 // adenohypophysis development // inferred from mutant phenotype /// 0021987 // cerebral cortex development // inferred from mutant phenotype /// 0030178 // negative regulation of Wnt signaling pathway // inferred from genetic interaction /// 0030539 // male genitalia development // inferred from mutant phenotype /// 0030858 // positive regulation of epithelial cell differentiation // inferred from direct assay /// 0030900 // forebrain development // inferred from electronic annotation /// 0030910 // olfactory placode formation // inferred from genetic interaction /// 0032526 // response to retinoic acid // inferred from direct assay /// 0035019 // somatic stem cell maintenance // not recorded /// 0042472 // inner ear morphogenesis // inferred from mutant phenotype /// 0043281 // regulation of cysteine-type endopeptidase activity involved in apoptotic process // not recorded /// 0043410 // positive regulation of MAPK cascade // not recorded /// 0043586 // tongue development // inferred from mutant phenotype /// 0045165 // cell fate commitment // inferred from direct assay /// 0045596 // negative regulation of cell differentiation // inferred from mutant phenotype /// 0045665 // negative regulation of neuron differentiation // inferred from direct assay /// 0045666 // positive regulation of neuron differentiation // inferred from mutant phenotype /// 0045668 // negative regulation of osteoblast differentiation // inferred from direct assay /// 0045747 // positive regulation of Notch signaling pathway // inferred from direct assay /// 0045893 // positive regulation of transcription, DNA-templated // not recorded /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from genetic interaction /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0046148 // pigment biosynthetic process // inferred from mutant phenotype /// 0048286 // lung alveolus development // inferred from direct assay /// 0048568 // embryonic organ development // inferred from mutant phenotype /// 0048646 // anatomical structure formation involved in morphogenesis // inferred from mutant phenotype /// 0048663 // neuron fate commitment // inferred from mutant phenotype /// 0048839 // inner ear development // inferred from electronic annotation /// 0048852 // diencephalon morphogenesis // inferred from mutant phenotype /// 0048863 // stem cell differentiation // inferred from direct assay /// 0050680 // negative regulation of epithelial cell proliferation // not recorded /// 0050767 // regulation of neurogenesis // inferred from genetic interaction /// 0050910 // detection of mechanical stimulus involved in sensory perception of sound // inferred from mutant phenotype /// 0050973 // detection of mechanical stimulus involved in equilibrioception // inferred from mutant phenotype /// 0060042 // retina morphogenesis in camera-type eye // inferred from mutant phenotype /// 0060235 // lens induction in camera-type eye // inferred from genetic interaction /// 0060441 // epithelial tube branching involved in lung morphogenesis // inferred from direct assay /// 0070848 // response to growth factor // not recorded /// 0090090 // negative regulation of canonical Wnt signaling pathway // inferred from direct assay /// 0090090 // negative regulation of canonical Wnt signaling pathway // not recorded /// 0097150 // neuronal stem cell maintenance // inferred from genetic interaction 0005634 // nucleus // inferred by curator /// 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005667 // transcription factor complex // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // cytoplasm // not recorded /// 0005829 // cytosol // not recorded /// 0044798 // nuclear transcription factor complex // inferred from direct assay 0000976 // transcription regulatory region sequence-specific DNA binding // not recorded /// 0000981 // sequence-specific DNA binding RNA polymerase II transcription factor activity // inferred from direct assay /// 0001077 // RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription // not recorded /// 0003677 // DNA binding // inferred from direct assay /// 0003677 // DNA binding // inferred from genetic interaction /// 0003677 // DNA binding // not recorded /// 0003682 // chromatin binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0008134 // transcription factor binding // inferred from physical interaction /// 0035198 // miRNA binding // not recorded /// 0043565 // sequence-specific DNA binding // inferred from direct assay /// 0043565 // sequence-specific DNA binding // not recorded /// 0044212 // transcription regulatory region DNA binding // inferred from direct assay /// 0044212 // transcription regulatory region DNA binding // not recorded /// 0046982 // protein heterodimerization activity // inferred from direct assay
100010_at U36340 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl U36340:Mus musculus CACCC-box binding protein BKLF mRNA, complete cds /cds=(44,1078) /gb=U36340 /gi=1244514 /ug=Mm.4549 /len=1200 /STRA=for U36340 Kruppel-like factor 3 (basic) Klf3 16599 NM_008453 /// XM_006503751 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 1901653 // cellular response to peptide // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation
100011_at AI851658 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl AI851658:UI-M-BH0-ain-f-03-0-UI.s1 Mus musculus cDNA, 3' end /clone=UI-M-BH0-ain-f-03-0-UI /clone_end=3' /gb=AI851658 /gi=5495564 /ug=Mm.4549 /len=448 /STRA=for AI851658 Kruppel-like factor 3 (basic) Klf3 16599 NM_008453 /// XM_006503751 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 1901653 // cellular response to peptide // inferred from electronic annotation 0005634 // nucleus // inferred from electronic annotation 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from sequence or structural similarity /// 0046872 // metal ion binding // inferred from electronic annotation
100012_at U29539 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl U29539:Mus musculus retinoic acid-inducible E3 protein mRNA, complete cds /cds=UNKNOWN /gb=U29539 /gi=924941 /ug=Mm.4554 /len=2450 /STRA=rev U29539 lysosomal-associated protein transmembrane 5 Laptm5 16792 NM_010686 /// XM_006536953 /// XM_006538597 0006810 // transport // inferred from electronic annotation 0005764 // lysosome // not recorded /// 0005765 // lysosomal membrane // inferred from electronic annotation /// 0005887 // integral component of plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral component of membrane // inferred from electronic annotation
100013_at AW121732 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl AW121732:UI-M-BH2.3-aoe-b-05-0-UI.s1 Mus musculus cDNA, 3' end /clone=UI-M-BH2.3-aoe-b-05-0-UI /clone_end=3' /gb=AW121732 /gi=6097065 /ug=Mm.45558 /len=377 /STRA=rev AW121732 interferon-induced protein 35 Ifi35 70110 NM_027320 0005634 // nucleus // not recorded 0005515 // protein binding // inferred from electronic annotation
100014_at AI845038 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl AI845038:UI-M-BG0-ahy-b-01-0-UI.s1 Mus musculus cDNA, 3' end /clone=UI-M-BG0-ahy-b-01-0-UI /clone_end=3' /gb=AI845038 /gi=5488944 /ug=Mm.4557 /len=380 /STRA=for AI845038 tousled-like kinase 2 (Arabidopsis) Tlk2 24086 NM_001112705 /// NM_001294329 /// NM_001294330 /// NM_001294331 /// NM_001294334 /// NM_011903 /// XM_006533311 /// XM_006533312 /// XM_006533313 /// XM_006533314 /// XM_006533315 /// XM_006533316 /// XM_006533317 /// XM_006533318 /// XM_006533319 /// XM_006533320 /// XM_006533321 0001672 // regulation of chromatin assembly or disassembly // not recorded /// 0006468 // protein phosphorylation // not recorded /// 0006974 // cellular response to DNA damage stimulus // not recorded /// 0007049 // cell cycle // inferred from electronic annotation /// 0007059 // chromosome segregation // not recorded /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0007283 // spermatogenesis // inferred from electronic annotation /// 0016310 // phosphorylation // inferred from electronic annotation /// 0016568 // chromatin modification // inferred from electronic annotation /// 0018105 // peptidyl-serine phosphorylation // not recorded /// 0030154 // cell differentiation // inferred from electronic annotation /// 0032435 // negative regulation of proteasomal ubiquitin-dependent protein catabolic process // not recorded /// 0035556 // intracellular signal transduction // not recorded /// 0071480 // cellular response to gamma radiation // not recorded 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // not recorded /// 0005730 // nucleolus // not recorded /// 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005882 // intermediate filament // inferred from direct assay /// 0005882 // intermediate filament // not recorded /// 0048471 // perinuclear region of cytoplasm // inferred from direct assay /// 0048471 // perinuclear region of cytoplasm // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004674 // protein serine/threonine kinase activity // not recorded /// 0004713 // protein tyrosine kinase activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005524 // ATP binding // not recorded /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation
100015_at X67677 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl X67677:Yamaguchi sarcoma viral (v-yes) oncogene homolog /cds=(602,2227) /gb=X67677 /gi=50623 /ug=Mm.4558 /len=4550 /STRA=for X67677 Yamaguchi sarcoma viral (v-yes) oncogene homolog 1 Yes1 22612 NM_001205132 /// NM_001205133 /// NM_009535 0006468 // protein phosphorylation // inferred from electronic annotation /// 0015758 // glucose transport // inferred from direct assay /// 0016310 // phosphorylation // inferred from electronic annotation /// 0018108 // peptidyl-tyrosine phosphorylation // not recorded /// 0046777 // protein autophosphorylation // not recorded 0005737 // cytoplasm // not recorded /// 0005794 // Golgi apparatus // not recorded /// 0005815 // microtubule organizing center // inferred from electronic annotation /// 0005829 // cytosol // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic annotation /// 0005886 // plasma membrane // not recorded /// 0016020 // membrane // inferred from electronic annotation /// 0070062 // extracellular vesicular exosome // not recorded 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // inferred from electronic annotation /// 0004713 // protein tyrosine kinase activity // not recorded /// 0004715 // non-membrane spanning protein tyrosine kinase activity // inferred from electronic annotation /// 0005154 // epidermal growth factor receptor binding // not recorded /// 0005515 // protein binding // inferred from physical interaction /// 0005524 // ATP binding // inferred from electronic annotation /// 0016301 // kinase activity // inferred from electronic annotation /// 0016740 // transferase activity // inferred from electronic annotation /// 0016772 // transferase activity, transferring phosphorus-containing groups // inferred from electronic annotation /// 0019899 // enzyme binding // not recorded /// 0044325 // ion channel binding // not recorded
100016_at Z12604 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl Z12604:Matrix metalloproteinase 11 /cds=(10,1488) /gb=Z12604 /gi=467682 /ug=Mm.4561 /len=2246 /STRA=for Z12604 matrix metallopeptidase 11 Mmp11 17385 NM_008606 /// XM_006513318 0006508 // proteolysis // inferred from direct assay /// 0007275 // multicellular organismal development // inferred from electronic annotation /// 0030198 // extracellular matrix organization // inferred from mutant phenotype /// 0030199 // collagen fibril organization // inferred from mutant phenotype /// 0030574 // collagen catabolic process // inferred from direct assay /// 0045599 // negative regulation of fat cell differentiation // inferred from direct assay /// 0071711 // basement membrane organization // inferred from mutant phenotype 0005576 // extracellular region // inferred from electronic annotation /// 0005578 // proteinaceous extracellular matrix // inferred from electronic annotation /// 0031012 // extracellular matrix // inferred by curator /// 0031012 // extracellular matrix // not recorded 0004222 // metalloendopeptidase activity // inferred from electronic annotation /// 0005509 // calcium ion binding // inferred from electronic annotation /// 0008233 // peptidase activity // inferred from electronic annotation /// 0008237 // metallopeptidase activity // inferred from direct assay /// 0008270 // zinc ion binding // inferred from electronic annotation /// 0016787 // hydrolase activity // inferred from electronic annotation /// 0046872 // metal ion binding // inferred from electronic annotation
100017_at U68267 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl U68267:Mus musculus myosin binding protein H (MyBP-H) mRNA, complete cds /cds=(50,1501) /gb=U68267 /gi=1546812 /ug=Mm.4562 /len=1850 /STRA=for U68267 myosin binding protein H Mybph 53311 NM_016749 /// XM_006529753 /// XM_006529754 /// XR_387182 /// XR_387183 0007155 // cell adhesion // inferred from electronic annotation 0032982 // myosin filament // inferred from electronic annotation 0005515 // protein binding // inferred from electronic annotation
100018_at X71327 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl X71327:M. musculus mRNA for MRE-binding transcription factor /cds=(96,2123) /gb=X71327 /gi=510149 /ug=Mm.4563 /len=2559 /STRA=for X71327 metal response element binding transcription factor 1 Mtf1 17764 NM_008636 /// XM_006502830 /// XM_006502831 /// XM_006502832 0006351 // transcription, DNA-templated // inferred from electronic annotation /// 0006355 // regulation of transcription, DNA-templated // inferred from electronic annotation /// 0006979 // response to oxidative stress // inferred from mutant phenotype /// 0045893 // positive regulation of transcription, DNA-templated // inferred from mutant phenotype /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // inferred from direct assay /// 0045944 // positive regulation of transcription from RNA polymerase II promoter // not recorded /// 0046686 // response to cadmium ion // inferred from mutant phenotype 0005634 // nucleus // inferred by curator /// 0005634 // nucleus // not recorded 0000979 // RNA polymerase II core promoter sequence-specific DNA binding // inferred from direct assay /// 0001047 // core promoter binding // not recorded /// 0003676 // nucleic acid binding // inferred from electronic annotation /// 0003677 // DNA binding // inferred from direct assay /// 0003700 // sequence-specific DNA binding transcription factor activity // inferred from direct assay /// 0005515 // protein binding // inferred from electronic annotation /// 0035035 // histone acetyltransferase binding // inferred from physical interaction /// 0046872 // metal ion binding // inferred from electronic annotation
100019_at D45889 Mus musculus Oct 6, 2014 Consensus sequence GenBank Cluster Incl D45889:Chondroitin sulfate proteoglycan 2 /cds=(0,124) /gb=D45889 /gi=994777 /ug=Mm.4575 /len=2201 /STRA=for D45889 versican Vcan 13003 NM_001081249 /// NM_001134474 /// NM_001134475 /// NM_019389 /// NM_172955 /// XM_006517076 /// XM_006517077 /// XM_006517078 /// XM_006517079 0001649 // osteoblast differentiation // not recorded /// 0001657 // ureteric bud development // inferred from expression pattern /// 0007155 // cell adhesion // inferred from electronic annotation /// 0007507 // heart development // inferred from mutant phenotype /// 0008347 // glial cell migration // not recorded 0005576 // extracellular region // inferred from direct assay /// 0005578 // proteinaceous extracellular matrix // inferred from direct assay /// 0005615 // extracellular space // not recorded /// 0016020 // membrane // not recorded /// 0031012 // extracellular matrix // not recorded /// 0043231 // intracellular membrane-bounded organelle // not recorded 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from electronic annotation /// 0005540 // hyaluronic acid binding // inferred from electronic annotation /// 0030246 // carbohydrate binding // inferred from electronic annotation

Total number of rows: 12654

Table truncated, full table size 20452 Kbytes.






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