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Status
Public on Sep 01, 2005
Title
yeast_nucleosome_positioning_microarray 6-9
Technology type
spotted oligonucleotide
Distribution
non-commercial
Organism
Saccharomyces cerevisiae Manufacturer
Center for Genomics Research, Harvard University
Manufacture protocol
MGuide, www.microarrays.org
Support
glass
Coating
polysine
Description
The sequence from S. cerevisiae chromosome III was fragmented into 50-mers overlapping every 20 base pairs. Potentially cross-hybridizing probes were filtered by BLASTing these sequences against the entire genome and eliminating sequences from chromosome III that included 5 or more contiguous probes with perfect BLAST matches, leaving 30 contigs covering 278,960 base pairs. Oligonucleotides were also tiled over one kilobase of 230 promoters on other chromosomes, starting at -900 from the start codon and extending to +100. This platform contains two extra plates compared to Platform GPL1950.
Contributor(s)
Rando OJ Submission date
Jul 13, 2005
Last update date
Sep 01, 2005
Contact name
Oliver Rando
E-mail(s)
Oliver.Rando@umassmed.edu Phone
508-856-8879
Organization name
UMass Medical School
Street address
364 Plantation St.
City
Worcester
State/province
MA
ZIP/Postal code
01605-4321
Country
USA
Samples (305)
GSM64538 , GSM64539 , GSM64540 , GSM64541 , GSM64542 , GSM64543
GSM64544 ,
GSM64545 ,
GSM64546 ,
GSM64547 ,
GSM64548 ,
GSM64549 ,
GSM64550 ,
GSM64551 ,
GSM64552 ,
GSM64553 ,
GSM64554 ,
GSM64555 ,
GSM64556 ,
GSM64557 ,
GSM64558 ,
GSM64559 ,
GSM64560 ,
GSM64561 ,
GSM64562 ,
GSM64563 ,
GSM64564 ,
GSM64565 ,
GSM64566 ,
GSM64567 ,
GSM64568 ,
GSM64569 ,
GSM64570 ,
GSM64571 ,
GSM64572 ,
GSM64573 ,
GSM64574 ,
GSM64575 ,
GSM64576 ,
GSM64577 ,
GSM64578 ,
GSM64579 ,
GSM64580 ,
GSM64581 ,
GSM64582 ,
GSM64583 ,
GSM64584 ,
GSM64585 ,
GSM64586 ,
GSM64587 ,
GSM64591 ,
GSM64592 ,
GSM154085 ,
GSM154086 ,
GSM154087 ,
GSM154088 ,
GSM154089 ,
GSM154090 ,
GSM154091 ,
GSM154092 ,
GSM154167 ,
GSM154168 ,
GSM154169 ,
GSM154170 ,
GSM154171 ,
GSM154172 ,
GSM154173 ,
GSM154174 ,
GSM321632 ,
GSM321633 ,
GSM321634 ,
GSM321635 ,
GSM321636 ,
GSM321637 ,
GSM321638 ,
GSM321639 ,
GSM321640 ,
GSM321641 ,
GSM321642 ,
GSM321643 ,
GSM321644 ,
GSM321645 ,
GSM321646 ,
GSM321648 ,
GSM321649 ,
GSM321650 ,
GSM321651 ,
GSM321652 ,
GSM321653 ,
GSM321654 ,
GSM321655 ,
GSM321665 ,
GSM321666 ,
GSM321667 ,
GSM321668 ,
GSM321669 ,
GSM321670 ,
GSM321671 ,
GSM321672 ,
GSM321674 ,
GSM321682 ,
GSM321683 ,
GSM321684 ,
GSM321685 ,
GSM321686 ,
GSM321687 ,
GSM321688 ,
GSM321689 ,
GSM321690 ,
GSM321691 ,
GSM321692 ,
GSM321693 ,
GSM321694 ,
GSM321695 ,
GSM321696 ,
GSM321697 ,
GSM321698 ,
GSM321699 ,
GSM321700 ,
GSM321701 ,
GSM321702 ,
GSM321703 ,
GSM321704 ,
GSM321705 ,
GSM321706 ,
GSM321707 ,
GSM321708 ,
GSM321709 ,
GSM321710 ,
GSM321711 ,
GSM321712 ,
GSM321713 ,
GSM321714 ,
GSM321715 ,
GSM321716 ,
GSM321717 ,
GSM321718 ,
GSM321719 ,
GSM321720 ,
GSM321721 ,
GSM321722 ,
GSM321723 ,
GSM321724 ,
GSM321725 ,
GSM321726 ,
GSM321727 ,
GSM321728 ,
GSM321729 ,
GSM321730 ,
GSM321731 ,
GSM321732 ,
GSM321733 ,
GSM321734 ,
GSM321735 ,
GSM321736 ,
GSM321737 ,
GSM321738 ,
GSM321739 ,
GSM321740 ,
GSM321741 ,
GSM362301 ,
GSM362302 ,
GSM362304 ,
GSM362305 ,
GSM362306 ,
GSM362307 ,
GSM362308 ,
GSM362309 ,
GSM362310 ,
GSM362311 ,
GSM362312 ,
GSM362313 ,
GSM362314 ,
GSM362315 ,
GSM362316 ,
GSM362317 ,
GSM362318 ,
GSM362319 ,
GSM362320 ,
GSM362321 ,
GSM362322 ,
GSM362323 ,
GSM362324 ,
GSM362325 ,
GSM362326 ,
GSM362327 ,
GSM362329 ,
GSM362330 ,
GSM362331 ,
GSM362332 ,
GSM362333 ,
GSM362334 ,
GSM362335 ,
GSM362336 ,
GSM362339 ,
GSM362340 ,
GSM362937 ,
GSM362938 ,
GSM362939 ,
GSM362940 ,
GSM362941 ,
GSM362942 ,
GSM362943 ,
GSM362944 ,
GSM362945 ,
GSM362946 ,
GSM363452 ,
GSM363453 ,
GSM363454 ,
GSM363455 ,
GSM363456 ,
GSM363457 ,
GSM363458 ,
GSM363459 ,
GSM363469 ,
GSM363470 ,
GSM363471 ,
GSM363472 ,
GSM363473 ,
GSM363474 ,
GSM363475 ,
GSM363476 ,
GSM363477 ,
GSM363478 ,
GSM363479 ,
GSM363480 ,
GSM363481 ,
GSM363482 ,
GSM363483 ,
GSM363484 ,
GSM363485 ,
GSM363486 ,
GSM363548 ,
GSM363549 ,
GSM363550 ,
GSM363551 ,
GSM363552 ,
GSM363553 ,
GSM363554 ,
GSM363555 ,
GSM363556 ,
GSM363557 ,
GSM363558 ,
GSM363559 ,
GSM363560 ,
GSM363561 ,
GSM363562 ,
GSM363563 ,
GSM363564 ,
GSM363565 ,
GSM363566 ,
GSM363567 ,
GSM363568 ,
GSM363569 ,
GSM363570 ,
GSM363571 ,
GSM363572 ,
GSM363573 ,
GSM363574 ,
GSM363575 ,
GSM363576 ,
GSM363577 ,
GSM363578 ,
GSM363579 ,
GSM363580 ,
GSM363581 ,
GSM363582 ,
GSM509199 ,
GSM509200 ,
GSM509201 ,
GSM509202 ,
GSM509203 ,
GSM509204 ,
GSM509205 ,
GSM509206 ,
GSM509207 ,
GSM509208 ,
GSM509209 ,
GSM509210 ,
GSM509211 ,
GSM509212 ,
GSM509213 ,
GSM509214 ,
GSM509215 ,
GSM509216 ,
GSM509217 ,
GSM509218 ,
GSM509219 ,
GSM509220 ,
GSM509221 ,
GSM509222 ,
GSM509294 ,
GSM509295 ,
GSM509296 ,
GSM509297 ,
GSM509298 ,
GSM509299 ,
GSM631742 ,
GSM631743 ,
GSM631744 ,
GSM631745 ,
GSM631746 ,
GSM631747 ,
GSM631748 ,
GSM631749 Series (7)
GSE2954 Single-nucleosome mapping of histone modifications in S. cerevisiae
GSE6664 Ratios for unsync cells
GSE6665 Ratios for G1 arrested cells (Printed array)
GSE6680 Dynamics of replication-independent histone turnover in budding yeast
GSE12822 Cell cycle- and chaperone-mediated regulation of H3K56ac incorporation in yeast
GSE14565 Replication and active demethylation represent partially overlapping mechanisms for erasure of H3K4me3 in budding yeast
GSE25722 Chip-chip from wt and ino80 mutant cells with Htz1
Data table header descriptions ID
SEQUENCE nucleotide sequences of the 50mer oligo probes on tiled yeast nucleosome array
SPOT_ID spot identifier
Data table ID SEQUENCE SPOT_ID 493550
CACGCTGTGGTTCCCACCGCACGCTATCTTCCTGACTATTGCTCCATCAT
493552
ACGCTATCTTCCTGACTATTGCTCCATCATCTCCTGGCACAGACCTCTGT
493554
GCTCCATCATCTCCTGGCACAGACCTCTGTGGGGTATCCATATCCTCATC
493556
AGACCTCTGTGGGGTATCCATATCCTCATCGTGCCCCAGTCCCAGTTGCC
493558
TATCCTCATCGTGCCCCAGTCCCAGTTGCCTTTGCCCATTAGACCCAAAC
493560
CCCAGTTGCCTTTGCCCATTAGACCCAAACGCATACACACAACTCATCGA
493562
AGACCCAAACGCATACACACAACTCATCGATACAAGCCTGTTATAGCCTT
493564
AACTCATCGATACAAGCCTGTTATAGCCTTTAATGATCACATTCCATCAC
493566
TTATAGCCTTTAATGATCACATTCCATCACTTGCGCTTTGGATCTGCCTG
493568
ATTCCATCACTTGCGCTTTGGATCTGCCTGCATTATCAAGGCTCAAACGG
493570
GATCTGCCTGCATTATCAAGGCTCAAACGGCTGCGTTACCCCCGTCGCCG
493572
GCTCAAACGGCTGCGTTACCCCCGTCGCCGCGAAATTTTTCATAATTTTT
493574
CCCGTCGCCGCGAAATTTTTCATAATTTTTCACTTTGTAGGATTAAAAGA
493576
CATAATTTTTCACTTTGTAGGATTAAAAGAGATCATGAGCCCATCTCGCA
493578
GATTAAAAGAGATCATGAGCCCATCTCGCAATGCAACACGTAACTTAAAT
493580
CCATCTCGCAATGCAACACGTAACTTAAATCAGTACTGGCGTGTGCTATA
493582
TAACTTAAATCAGTACTGGCGTGTGCTATAGTGCTCTATATTCGAGTTTG
493584
GTGTGCTATAGTGCTCTATATTCGAGTTTGTTGCTACTGGTGGACACCCG
493586
TTCGAGTTTGTTGCTACTGGTGGACACCCGACTATCTACAGTAAGGAACG
493588
TGGACACCCGACTATCTACAGTAAGGAACGTAAACAAGAAAAAGAGAGAA
25728 1506 Kbytes .Supplementary data files not provided
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