NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL24563 Query DataSets for GPL24563
Status Public on May 31, 2018
Title Agilent-033074 Jatropha curcas BOKU 60k micrarray (probe name version)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Jatropha curcas
Manufacturer Agilent
Manufacture protocol Agilent
 
 
Submission date Jan 31, 2018
Last update date May 31, 2018
Contact name Klemens Vierlinger
E-mail(s) klemens.vierlinger@ait.ac.at
Organization name AIT
Department HMD
Street address Giefinggasse 4
City Vienna
ZIP/Postal code 1210
Country Austria
 
Samples (31) GSM2974089, GSM2974090, GSM2974091, GSM2974092, GSM2974093, GSM2974094 
Series (1)
GSE109931 Gene expression profiling allows the identification of pathways involved in seeds development of Jatropha curcas

Data table header descriptions
ID
SEQUENCE Sequence of the microarray probe
ProteinDescription Description of corresponding Protein
SPOT_ID

Data table
ID SEQUENCE ProteinDescription SPOT_ID
contig03731_length=1212|500|60 GGAAGTCTGAGCATGCTTTCTATTTGGATTGGGCAGTTCACTCTTTCAGGATTACTAACT 831660|ATMS1|ATMS1; 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase/ copper ion binding / methionine synthase contig03731
contig05771_length=659|0|60 ACTACTACCAAGAAATCATCAATGGCAGTAACAAGAACTACAACAACAACAACAAATGGG 834969|AT5G49100|hypothetical protein contig05771
contig20706_length=224|0|60 CCTTCAAATTCAGTTCAGATATAAACATTTGCACAAGCTCCTCTGCTAACTGCTCAAAAG 830689|AT5G07950|hypothetical protein contig20706
contig05073_length=1580|1000|60 AATCCATTTCCTCTACCCTTTGCCCTTCCTCTACCACCCCGACCTCTACCACGGCCATTT 838610|AT1G20220|nucleic acid binding contig05073
contig01874_length=918|0|60 GACAAAGTAATGCAGGTCATTTAATATAAATTTACCATGAACAATGTTGTTGATCAAGTA 835498|ATMAMI|ATMAMI (ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED MANNITOL-INDUCED); structural molecule contig01874
contig00831_length=1740|250|60 TTATCCTCTAAGAGCAGTAAGAGAGAGTTGCAGACAGAGAAAAAGCGAGCGCGGCCAAAT 831960|AT5G18420|hypothetical protein contig00831
contig11080_length=1042|0|60 GGGGACTAAACCTAACAACTCGATCATTATCATGGCTTCCAGAAAATTTTCCTTCTTTTC 842291|AT1G59970|matrixin family protein contig11080
contig06210_length=360|250|60 GTGTAAATAATGCTCATGCGAGAATGTATCTAAAAAGATTTGTATTCATGAAGCTGTAAA 0 contig06210
contig14363_length=573|0|60 TTCTGCAATTCCTTCACCCCTTCAGATAAGTTGTCCTTCTGTAGTAATGCAAGTCCTAAC 819925|CHIP|CHIP (CARBOXYL TERMINUS OF HSC70-INTERACTING PROTEIN); ubiquitin-protein ligase contig14363
contig09960_length=1072|0|60 CCCAATGCGCTTTACCGGGTAATAGACCGGGTCAAGAATGCGGTTTTGTTACTGTCAGAT 818076|ARAD1|ARAD1 (ARABINAN DEFICIENT 1); catalytic/ transferase, transferring glycosyl groups contig09960
contig01590_length=1593|0|60 CCCTTTCCCGCTTTAATGTTTAAACTATTCTTATTACAAAATAGCAGTGCACACATATTC 820572|AT3G13670|protein kinase family protein contig01590
contig05064_length=576|250|60 GGCTGCTGAGTCAATGAAAGGTAGCCATTTAGATGAAGTGAAGAAGATGGTGAGTGAATA 824493|PAL2|PAL2; phenylalanine ammonia-lyase contig05064
contig06674_length=629|250|60 ATGCCCGACTGTTGCAAATACTGATAGAAAGGCCTTGAGATGTTGGCAGAAGGTGATTTC 841667|AT1G52370|ribosomal protein L22 family protein contig06674
contig16901_length=881|250|60 AATCCAAGGAAAAAACTGAAGCAAATATAAGGACTATTCTATCTAGCAGATTGTAGGCAA 819104|HUB1|HUB1 (HISTONE MONO-UBIQUITINATION 1); protein binding / protein homodimerization/ ubiquitin-protein ligase/ zinc ion binding contig16901
contig00196_length=1667|250|60 TGGCTAATAACAAGGGTTCATTTCTAATTTTCTGTCCCTGTTTTATTCCTTTGATGCATT 816808|PMDH1|PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1); L-malate dehydrogenase/ binding / catalytic/ malate dehydrogenase/ oxidoreductase/ oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor contig00196
contig09523_length=1381|1250|60 GAACCGACATAGTTTAGCGTCTCTGAGAAGAGAGAATGGAAATGGCTTCTTATTTTCCGG 828262|AT4G21740|hypothetical protein contig09523
contig18589_length=1125|0|60 AAAGTTAAAAGAACTGTCATAAATTAAGCTTCATAATCACTAAGCAGGATACATCCAACA 820635|AT3G14180|transcription factor contig18589
contig11599_length=820|750|60 AGACTAGCAGAGGGTACCCGCCCTTTTACATTTTGTGATATGTTGCTATTAATGTAAATC 837696|ATCXXS1|ATCXXS1 (C-terminal cysteine residue is changed to a serine 1); protein disulfide isomerase contig11599
contig11979_length=375|250|60 AGCATCTGATCTAAAAGTGCATGGGTACTTACACCTCCAAAATGACTAACAGTTTCATCA 0 contig11979
contig10098_length=1626|1250|60 TCTAAGTATCTTGCGTTATATAATAAGATCAATGATGAGAGAGATGATTTAACGAGAGTC 841536|AT1G51130|hypothetical protein contig10098

Total number of rows: 57842

Table truncated, full table size 8664 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap