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Platform GPL22490 Query DataSets for GPL22490
Status Public on Sep 30, 2016
Title 20050711MD_PMC
Technology type spotted oligonucleotide
Distribution non-commercial
Organisms Saccharomyces bayanus; Saccharomyces cerevisiae
Manufacturer Lewis-Sigler Institute Microarray Facility
Manufacture protocol The following parameters were used to manufacture the printed array named "20050711MD_PMC"
Printer: Arrayer 250B
Array Configuration: (columns X rows) 48 sectors ( 4 X 12 spotted) Standard 48 tip
Spot Columns per Sector: 24
Spot Rows per Sector: 11
Column Spacing: 184
Row Spacing: 156
Plate Orientation: rotated 90 degrees clockwise (P1 top-left, A1 top-right)
Printhead Dip Dynamics: top to bottom, right to left
Sector Spotting Dynamics: left to right, top to bottom
Number of Slides: 230
Plates used in this print, in order.
PLATEID PLATENAME PLATE_VISITS IS_FLIPPED
100530 70_N_SSC
100511 HYBRIDSB_12
100508 HYBRIDSB_9
100524 HYBRIDSC_12
100521 HYBRIDSC_9
100505 HYBRIDSB_6
100519 HYBRIDSC_7
100526 HYBRIDSC_14
100518 HYBRIDSC_6
100504 HYBRIDSB_5
100502 HYBRIDSB_3
100516 HYBRIDSC_4
100522 HYBRIDSC_10
100520 HYBRIDSC_8
100506 HYBRIDSB_7
100510 HYBRIDSB_11
100512 HYBRIDSB_13
100529 HYBRIDSC_17
100513 HYBRIDSC_1
100525 HYBRIDSC_13
100528 HYBRIDSC_16
100517 HYBRIDSC_5
100507 HYBRIDSB_8
100503 HYBRIDSB_4
100514 HYBRIDSC_2
100509 HYBRIDSB_10
100501 HYBRIDSB_2
100523 HYBRIDSC_11
100515 HYBRIDSC_3
100500 HYBRIDSB_1
100527 HYBRIDSC_15
 
Description Dunham project-SCSB-1-print 2, a multi-organism print.
 
Submission date Sep 27, 2016
Last update date Sep 30, 2016
Contact name Maitreya J. Dunham
E-mail(s) maitreya@uw.edu
Phone 206-543-2338
Organization name University of Washington
Department Genome Sciences
Lab Dunham Lab
Street address Foege Building, S403B, Box 355065
City Seattle
State/province WA
ZIP/Postal code 98195-5065
Country USA
 
Samples (8) GSM2330189, GSM2330192, GSM2330195, GSM2330201, GSM2330204, GSM2330214 
Series (1)
GSE87401 Differential paralog divergence modulates evolutionary outcomes in yeast

Data table header descriptions
ID feature/spot number
SPOT_ID clone identifier or gene name
ORGANISM the organism of the spotted sequence
ORF the systematic name of the open reading frame
GENE_NAME the published name or descripion of the gene product
SEQUENCE oligonucleotide sequence

Data table
ID SPOT_ID ORGANISM ORF GENE_NAME SEQUENCE
1 70_N_40UM_SSC
2 3XSSC
3 EMPTY
4 EMPTY
5 EMPTY
6 EMPTY
7 EMPTY
8 EMPTY
9 645.31 Saccharomyces bayanus YER008C SEC3 GTATGGTTAGATAATGTAGAGGAACAGGTTCTATATTTTGAAAGAATTTCAAATGCGACGACTAATGGAG
10 671.21 Saccharomyces bayanus YMR285C NGL2 GATTACCTCTTTTATATAAAAAAATGGGACCTACGAAGTAACTGTCAAGAAGTGGATAGTCTTGACGATT
11 580.8 Saccharomyces bayanus YDR352W YPQ2 ATTAAGCACAGCAACTGCATATCCTTTAAGCATAGCTTCTGATCCATCCCATGCGGGTCCATCTGGAGAT
12 678.33 Saccharomyces bayanus YBR194W AIM4 AAGCTGCGGATGAACATTTATTAGGTTATGAACGGAATAATGGTGAACTTGGTGTGAGGAGTATATTCTA
13 678.27 Saccharomyces bayanus YBR200W BEM1 CCATTGTTCTTTATGACTTTAAAGCGGAAAAGGCAGATGAATTAACAACATACGTAGGAGAAAACTTGTT
14 663.38 Saccharomyces bayanus YKL161C KDX1 GATGTATTTTTCGTGCCTTTGGCCAGGAATATATCCTAAATAAGCACTTTCGATTGGTAGATGAGATTGG
15 595.1 Saccharomyces bayanus YBR244W GPX2 TTTCACTCCACAATATAAAGAGCTAGAGGAATTATATAAAAAGCACCAGGATAAGGGGTTTATCATCTTG
16 678.51 Saccharomyces bayanus YBR172C SMY2 TCAAGTGGTGCAAATCTCAAATGAGACTAAATTCTGGCATAACAAGTAATAACGTATTGGAGCTGTTATT
17 631.44 Saccharomyces bayanus YDR476C TACCCCTGCACCCTGGTCGACTGGCTGATCATCGTGGGCGTCACGCTGCCGGCGCTGTGCTACCTGTATC
18 678.81 Saccharomyces bayanus YBR142W MAK5 ATCTTTTCTGCAACTTTCTCTATCGACCTGTTTGATAAACTATCCTCGTCTCATCAGGCTAGGAATAAAT
19 572.9 Saccharomyces bayanus YHR062C RPP1 CATCAAGCTGGTCAAGAGAACTATGGACCCCGAGCAGCTCGGCCACGCCGCCAAGAGGCGCAAGCCATGA
20 672.51 Saccharomyces bayanus YLR070C XYL2 GAAGGTACAACCTGGATCCTGATTTAAAATTCGCAGCTACACCACCCTATGACGGAACTTTGACGAAGTA

Total number of rows: 11904

Table truncated, full table size 1328 Kbytes.




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