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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Sep 30, 2016 |
| Title |
20050711MD_PMC |
| Technology type |
spotted oligonucleotide |
| Distribution |
non-commercial |
| Organisms |
Saccharomyces bayanus; Saccharomyces cerevisiae |
| Manufacturer |
Lewis-Sigler Institute Microarray Facility |
| Manufacture protocol |
The following parameters were used to manufacture the printed array named "20050711MD_PMC"
Printer: Arrayer 250B
Array Configuration: (columns X rows) 48 sectors ( 4 X 12 spotted) Standard 48 tip
Spot Columns per Sector: 24
Spot Rows per Sector: 11
Column Spacing: 184
Row Spacing: 156
Plate Orientation: rotated 90 degrees clockwise (P1 top-left, A1 top-right)
Printhead Dip Dynamics: top to bottom, right to left
Sector Spotting Dynamics: left to right, top to bottom
Number of Slides: 230
Plates used in this print, in order.
PLATEID PLATENAME PLATE_VISITS IS_FLIPPED
100530 70_N_SSC
100511 HYBRIDSB_12
100508 HYBRIDSB_9
100524 HYBRIDSC_12
100521 HYBRIDSC_9
100505 HYBRIDSB_6
100519 HYBRIDSC_7
100526 HYBRIDSC_14
100518 HYBRIDSC_6
100504 HYBRIDSB_5
100502 HYBRIDSB_3
100516 HYBRIDSC_4
100522 HYBRIDSC_10
100520 HYBRIDSC_8
100506 HYBRIDSB_7
100510 HYBRIDSB_11
100512 HYBRIDSB_13
100529 HYBRIDSC_17
100513 HYBRIDSC_1
100525 HYBRIDSC_13
100528 HYBRIDSC_16
100517 HYBRIDSC_5
100507 HYBRIDSB_8
100503 HYBRIDSB_4
100514 HYBRIDSC_2
100509 HYBRIDSB_10
100501 HYBRIDSB_2
100523 HYBRIDSC_11
100515 HYBRIDSC_3
100500 HYBRIDSB_1
100527 HYBRIDSC_15
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| Description |
Dunham project-SCSB-1-print 2, a multi-organism print.
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| Submission date |
Sep 27, 2016 |
| Last update date |
Sep 30, 2016 |
| Contact name |
Maitreya J. Dunham |
| E-mail(s) |
maitreya@uw.edu
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| Phone |
206-543-2338
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| Organization name |
University of Washington
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| Department |
Genome Sciences
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| Lab |
Dunham Lab
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| Street address |
Foege Building, S403B, Box 355065
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| City |
Seattle |
| State/province |
WA |
| ZIP/Postal code |
98195-5065 |
| Country |
USA |
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| Samples (8)
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GSM2330189, GSM2330192, GSM2330195, GSM2330201, GSM2330204, GSM2330214
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| Series (1) |
| GSE87401 |
Differential paralog divergence modulates evolutionary outcomes in yeast |
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| Data table header descriptions |
| ID |
feature/spot number |
| SPOT_ID |
clone identifier or gene name |
| ORGANISM |
the organism of the spotted sequence |
| ORF |
the systematic name of the open reading frame |
| GENE_NAME |
the published name or descripion of the gene product |
| SEQUENCE |
oligonucleotide sequence |
| Data table |
| ID |
SPOT_ID |
ORGANISM |
ORF |
GENE_NAME |
SEQUENCE |
| 1 |
70_N_40UM_SSC |
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| 2 |
3XSSC |
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| 3 |
EMPTY |
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| 4 |
EMPTY |
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| 5 |
EMPTY |
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| 6 |
EMPTY |
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| 7 |
EMPTY |
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| 8 |
EMPTY |
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| 9 |
645.31 |
Saccharomyces bayanus |
YER008C |
SEC3 |
GTATGGTTAGATAATGTAGAGGAACAGGTTCTATATTTTGAAAGAATTTCAAATGCGACGACTAATGGAG |
| 10 |
671.21 |
Saccharomyces bayanus |
YMR285C |
NGL2 |
GATTACCTCTTTTATATAAAAAAATGGGACCTACGAAGTAACTGTCAAGAAGTGGATAGTCTTGACGATT |
| 11 |
580.8 |
Saccharomyces bayanus |
YDR352W |
YPQ2 |
ATTAAGCACAGCAACTGCATATCCTTTAAGCATAGCTTCTGATCCATCCCATGCGGGTCCATCTGGAGAT |
| 12 |
678.33 |
Saccharomyces bayanus |
YBR194W |
AIM4 |
AAGCTGCGGATGAACATTTATTAGGTTATGAACGGAATAATGGTGAACTTGGTGTGAGGAGTATATTCTA |
| 13 |
678.27 |
Saccharomyces bayanus |
YBR200W |
BEM1 |
CCATTGTTCTTTATGACTTTAAAGCGGAAAAGGCAGATGAATTAACAACATACGTAGGAGAAAACTTGTT |
| 14 |
663.38 |
Saccharomyces bayanus |
YKL161C |
KDX1 |
GATGTATTTTTCGTGCCTTTGGCCAGGAATATATCCTAAATAAGCACTTTCGATTGGTAGATGAGATTGG |
| 15 |
595.1 |
Saccharomyces bayanus |
YBR244W |
GPX2 |
TTTCACTCCACAATATAAAGAGCTAGAGGAATTATATAAAAAGCACCAGGATAAGGGGTTTATCATCTTG |
| 16 |
678.51 |
Saccharomyces bayanus |
YBR172C |
SMY2 |
TCAAGTGGTGCAAATCTCAAATGAGACTAAATTCTGGCATAACAAGTAATAACGTATTGGAGCTGTTATT |
| 17 |
631.44 |
Saccharomyces bayanus |
YDR476C |
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TACCCCTGCACCCTGGTCGACTGGCTGATCATCGTGGGCGTCACGCTGCCGGCGCTGTGCTACCTGTATC |
| 18 |
678.81 |
Saccharomyces bayanus |
YBR142W |
MAK5 |
ATCTTTTCTGCAACTTTCTCTATCGACCTGTTTGATAAACTATCCTCGTCTCATCAGGCTAGGAATAAAT |
| 19 |
572.9 |
Saccharomyces bayanus |
YHR062C |
RPP1 |
CATCAAGCTGGTCAAGAGAACTATGGACCCCGAGCAGCTCGGCCACGCCGCCAAGAGGCGCAAGCCATGA |
| 20 |
672.51 |
Saccharomyces bayanus |
YLR070C |
XYL2 |
GAAGGTACAACCTGGATCCTGATTTAAAATTCGCAGCTACACCACCCTATGACGGAACTTTGACGAAGTA |
Total number of rows: 11904
Table truncated, full table size 1328 Kbytes.
| Supplementary data files not provided |
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