 |
 |
GEO help: Mouse over screen elements for information. |
|
Status |
Public on Sep 30, 2016 |
Title |
20050711MD_PMC |
Technology type |
spotted oligonucleotide |
Distribution |
non-commercial |
Organisms |
Saccharomyces bayanus; Saccharomyces cerevisiae |
Manufacturer |
Lewis-Sigler Institute Microarray Facility |
Manufacture protocol |
The following parameters were used to manufacture the printed array named "20050711MD_PMC" Printer: Arrayer 250B Array Configuration: (columns X rows) 48 sectors ( 4 X 12 spotted) Standard 48 tip Spot Columns per Sector: 24 Spot Rows per Sector: 11 Column Spacing: 184 Row Spacing: 156 Plate Orientation: rotated 90 degrees clockwise (P1 top-left, A1 top-right) Printhead Dip Dynamics: top to bottom, right to left Sector Spotting Dynamics: left to right, top to bottom Number of Slides: 230 Plates used in this print, in order. PLATEID PLATENAME PLATE_VISITS IS_FLIPPED 100530 70_N_SSC 100511 HYBRIDSB_12 100508 HYBRIDSB_9 100524 HYBRIDSC_12 100521 HYBRIDSC_9 100505 HYBRIDSB_6 100519 HYBRIDSC_7 100526 HYBRIDSC_14 100518 HYBRIDSC_6 100504 HYBRIDSB_5 100502 HYBRIDSB_3 100516 HYBRIDSC_4 100522 HYBRIDSC_10 100520 HYBRIDSC_8 100506 HYBRIDSB_7 100510 HYBRIDSB_11 100512 HYBRIDSB_13 100529 HYBRIDSC_17 100513 HYBRIDSC_1 100525 HYBRIDSC_13 100528 HYBRIDSC_16 100517 HYBRIDSC_5 100507 HYBRIDSB_8 100503 HYBRIDSB_4 100514 HYBRIDSC_2 100509 HYBRIDSB_10 100501 HYBRIDSB_2 100523 HYBRIDSC_11 100515 HYBRIDSC_3 100500 HYBRIDSB_1 100527 HYBRIDSC_15
|
|
|
Description |
Dunham project-SCSB-1-print 2, a multi-organism print.
|
|
|
Submission date |
Sep 27, 2016 |
Last update date |
Sep 30, 2016 |
Contact name |
Maitreya J. Dunham |
E-mail(s) |
maitreya@uw.edu
|
Phone |
206-543-2338
|
Organization name |
University of Washington
|
Department |
Genome Sciences
|
Lab |
Dunham Lab
|
Street address |
Foege Building, S403B, Box 355065
|
City |
Seattle |
State/province |
WA |
ZIP/Postal code |
98195-5065 |
Country |
USA |
|
|
Samples (8)
|
GSM2330189, GSM2330192, GSM2330195, GSM2330201, GSM2330204, GSM2330214
|
Series (1) |
GSE87401 |
Differential paralog divergence modulates evolutionary outcomes in yeast |
|
Data table header descriptions |
ID |
feature/spot number |
SPOT_ID |
clone identifier or gene name |
ORGANISM |
the organism of the spotted sequence |
ORF |
the systematic name of the open reading frame |
GENE_NAME |
the published name or descripion of the gene product |
SEQUENCE |
oligonucleotide sequence |
Data table |
ID |
SPOT_ID |
ORGANISM |
ORF |
GENE_NAME |
SEQUENCE |
1 |
70_N_40UM_SSC |
|
|
|
|
2 |
3XSSC |
|
|
|
|
3 |
EMPTY |
|
|
|
|
4 |
EMPTY |
|
|
|
|
5 |
EMPTY |
|
|
|
|
6 |
EMPTY |
|
|
|
|
7 |
EMPTY |
|
|
|
|
8 |
EMPTY |
|
|
|
|
9 |
645.31 |
Saccharomyces bayanus |
YER008C |
SEC3 |
GTATGGTTAGATAATGTAGAGGAACAGGTTCTATATTTTGAAAGAATTTCAAATGCGACGACTAATGGAG |
10 |
671.21 |
Saccharomyces bayanus |
YMR285C |
NGL2 |
GATTACCTCTTTTATATAAAAAAATGGGACCTACGAAGTAACTGTCAAGAAGTGGATAGTCTTGACGATT |
11 |
580.8 |
Saccharomyces bayanus |
YDR352W |
YPQ2 |
ATTAAGCACAGCAACTGCATATCCTTTAAGCATAGCTTCTGATCCATCCCATGCGGGTCCATCTGGAGAT |
12 |
678.33 |
Saccharomyces bayanus |
YBR194W |
AIM4 |
AAGCTGCGGATGAACATTTATTAGGTTATGAACGGAATAATGGTGAACTTGGTGTGAGGAGTATATTCTA |
13 |
678.27 |
Saccharomyces bayanus |
YBR200W |
BEM1 |
CCATTGTTCTTTATGACTTTAAAGCGGAAAAGGCAGATGAATTAACAACATACGTAGGAGAAAACTTGTT |
14 |
663.38 |
Saccharomyces bayanus |
YKL161C |
KDX1 |
GATGTATTTTTCGTGCCTTTGGCCAGGAATATATCCTAAATAAGCACTTTCGATTGGTAGATGAGATTGG |
15 |
595.1 |
Saccharomyces bayanus |
YBR244W |
GPX2 |
TTTCACTCCACAATATAAAGAGCTAGAGGAATTATATAAAAAGCACCAGGATAAGGGGTTTATCATCTTG |
16 |
678.51 |
Saccharomyces bayanus |
YBR172C |
SMY2 |
TCAAGTGGTGCAAATCTCAAATGAGACTAAATTCTGGCATAACAAGTAATAACGTATTGGAGCTGTTATT |
17 |
631.44 |
Saccharomyces bayanus |
YDR476C |
|
TACCCCTGCACCCTGGTCGACTGGCTGATCATCGTGGGCGTCACGCTGCCGGCGCTGTGCTACCTGTATC |
18 |
678.81 |
Saccharomyces bayanus |
YBR142W |
MAK5 |
ATCTTTTCTGCAACTTTCTCTATCGACCTGTTTGATAAACTATCCTCGTCTCATCAGGCTAGGAATAAAT |
19 |
572.9 |
Saccharomyces bayanus |
YHR062C |
RPP1 |
CATCAAGCTGGTCAAGAGAACTATGGACCCCGAGCAGCTCGGCCACGCCGCCAAGAGGCGCAAGCCATGA |
20 |
672.51 |
Saccharomyces bayanus |
YLR070C |
XYL2 |
GAAGGTACAACCTGGATCCTGATTTAAAATTCGCAGCTACACCACCCTATGACGGAACTTTGACGAAGTA |
Total number of rows: 11904
Table truncated, full table size 1328 Kbytes.
Supplementary data files not provided |
|
|
|
|
 |