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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Sep 23, 2016 |
| Title |
Illumina HiSeq 4000 (Sus scrofa) |
| Technology type |
high-throughput sequencing |
| Distribution |
virtual |
| Organism |
Sus scrofa |
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| Submission date |
Sep 23, 2016 |
| Last update date |
Jun 22, 2017 |
| Contact name |
GEO |
| Country |
USA |
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| Samples (1851)
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GSM2327807, GSM2327808, GSM2327809, GSM2327810, GSM2327811, GSM2327812
GSM2327813, GSM2327814, GSM2327815, GSM2327816, GSM2327817, GSM2327818, GSM2327819, GSM2327820, GSM2327821, GSM2327822, GSM2327823, GSM2327824, GSM2335738, GSM2335739, GSM2335740, GSM2335741, GSM2335742, GSM2335743, GSM2335744, GSM2335745, GSM2537033, GSM2537034, GSM2537035, GSM2537036, GSM2537037, GSM2537038, GSM2537039, GSM2537040, GSM2537041, GSM2537042, GSM2537043, GSM2537044, GSM2537045, GSM2537046, GSM2537047, GSM2537048, GSM2537049, GSM2537050, GSM2537051, GSM2537052, GSM2537053, GSM2537054, GSM2537055, GSM2537056, GSM2537057, GSM2537058, GSM2537059, GSM2537060, GSM2537061, GSM2537062, GSM2537063, GSM2537064, GSM2537065, GSM2537066, GSM2537067, GSM2537068, GSM2537069, GSM2537070, GSM2537071, GSM2537072, GSM2537073, GSM2537074, GSM2537075, GSM2537076, GSM2537077, GSM2537078, GSM2537079, GSM2537080, GSM2537081, GSM2537082, GSM2537083, GSM2537084, GSM2537085, GSM2537086, GSM2537087, GSM2537088, GSM2537089, GSM2537090, GSM2537091, GSM2537092, GSM2537093, GSM2537094, GSM2537095, GSM2537096, GSM2576297, GSM2576298, GSM2576299, GSM2576300, GSM2576301, GSM2576302, GSM2576303, GSM2651175, GSM2651176, GSM2651177, GSM2651178, GSM2651179, GSM2651180, GSM2651181, GSM2651182, GSM2651183, GSM2828332, GSM2828333, GSM2828334, GSM2828335, GSM2828336, GSM2828337, GSM2828338, GSM2828339, GSM2828340, GSM2828341, GSM2828342, GSM2828343, GSM2828344, GSM2828345, GSM2828346, GSM2868043, GSM2868044, GSM2868045, GSM2868046, GSM2868047, GSM2868048, GSM2868049, GSM2868050, GSM2868051, GSM2868052, GSM2868053, GSM2868054, GSM3072241, GSM3072242, GSM3072243, GSM3072244, GSM3072245, GSM3072246, GSM3072247, GSM3072248, GSM3072249, GSM3072250, GSM3072251, GSM3072252, GSM3072253, GSM3072254, GSM3072255, GSM3072256, GSM3072257, GSM3072258, GSM3072259, GSM3072260, GSM3072261, GSM3100776, GSM3100777, GSM3100778, GSM3100779, GSM3100780, GSM3100781, GSM3100782, GSM3100783, GSM3147842, GSM3147843, GSM3147844, GSM3147845, GSM3147846, GSM3147847, GSM3147848, GSM3147849, GSM3147850, GSM3147851, GSM3147852, GSM3147853, GSM3147854, GSM3147855, GSM3147856, GSM3147857, GSM3223357, GSM3223358, GSM3223359, GSM3223360, GSM3223361, GSM3223362, GSM3223363, GSM3223364, GSM3223365, GSM3223366, GSM3294392, GSM3294393, GSM3294394, GSM3294395, GSM3294396, GSM3294397, GSM3294398, GSM3294399, GSM3294400, GSM3294401, GSM3294402, GSM3294403, GSM3294404, GSM3294405, GSM3294406, GSM3294407, GSM3294408, GSM3294409, GSM3294410, GSM3294411, GSM3294412, GSM3294413, GSM3294414, GSM3294415, GSM3359487, GSM3359488, GSM3359489, GSM3359490, GSM3359491, GSM3359492, GSM3452586, GSM3452587, GSM3452588, GSM3452589, GSM3452590, GSM3452591, GSM3452592, GSM3452593, GSM3452594, GSM3452595, GSM3452596, GSM3452597, GSM3452598, GSM3452599, GSM3452600, GSM3452601, GSM3452602, GSM3452603, GSM3452604, GSM3452605, GSM3452606, GSM3452607, GSM3452608, GSM3452609, GSM3507510, GSM3507511, GSM3507512, GSM3507513, GSM3528858, GSM3528859, GSM3528860, GSM3528861, GSM3528862, GSM3528863, GSM3528864, GSM3528865, GSM3528866, GSM3528867, GSM3528868, GSM3528869, GSM3528870, GSM3528871, GSM3528872, GSM3528873, GSM3528874, GSM3528875, GSM3528876, GSM3528877, GSM3528878, GSM3528879, GSM3528880, GSM3528881, GSM3528882, GSM3528883, GSM3528884, GSM3528885, GSM3528886, GSM3528887, GSM3528888, GSM3528889, GSM3528890, GSM3528891, GSM3528892, GSM3528893, GSM3528894, GSM3528895, GSM3528896, GSM3528897, GSM3528898, GSM3528899, GSM3528900, GSM3528901, GSM3528902, GSM3528903, GSM3528904, GSM3528905, GSM3528906, GSM3528907, GSM3528908, GSM3528909, GSM3528910, GSM3528911, GSM3528912, GSM3528913, GSM3528914, GSM3528915, GSM3528916, GSM3528917, GSM3528918, GSM3528919, GSM3528920, GSM3528921, GSM3528922, GSM3528923, GSM3528924, GSM3528925, GSM3528926, GSM3528927, GSM3528928, GSM3528929, GSM3528930, GSM3528931, GSM3528932, GSM3528933, GSM3528934, GSM3528935, GSM3528936, GSM3528937, GSM3528938, GSM3528939, GSM3528940, GSM3528941, GSM3528942, GSM3528943, GSM3528944, GSM3528945, GSM3528946, GSM3528947, GSM3528948, GSM3528949, GSM3528950, GSM3528951, GSM3528952, GSM3528953, GSM3528954, GSM3528955, GSM3528956, GSM3528957, GSM3528958, GSM3528959, GSM3528960, GSM3528961, GSM3528962, GSM3528963, GSM3528964, GSM3528965, GSM3528966, GSM3528967, GSM3528968, GSM3528969, GSM3528970, GSM3528971, GSM3528972, GSM3528973, GSM3528974, GSM3528975, GSM3528976, GSM3528977, GSM3528978, GSM3528979, GSM3528980, GSM3528981, GSM3528982, GSM3528983, GSM3528984, GSM3528985, GSM3528986, GSM3528987, GSM3528988, GSM3528989, GSM3528990, GSM3528991, GSM3528992, GSM3528993, GSM3528994, GSM3528995, GSM3528996, GSM3528997, GSM3528998, GSM3528999, GSM3529000, GSM3529001, GSM3529002, GSM3529003, GSM3529004, GSM3529005, GSM3529006, GSM3529007, GSM3529008, GSM3529009, GSM3529010, GSM3529011, GSM3529012, GSM3529013, GSM3529014, GSM3529015, GSM3529016, GSM3529017, GSM3529018, GSM3529019, GSM3529020, GSM3529021, GSM3529022, GSM3529023, GSM3529024, GSM3529025, GSM3529026, GSM3529027, GSM3529028, GSM3529029, GSM3529030, GSM3529031, GSM3529032, GSM3529033, GSM3529034, GSM3529035, GSM3529036, GSM3529037, GSM3529038, GSM3529039, GSM3529040, GSM3529041, GSM3529042, GSM3529043, GSM3529044, GSM3529045, GSM3529046, GSM3729050, GSM3729051, GSM3729052, GSM3729053, GSM3729054, GSM3729055, GSM3739229, GSM3739230, GSM3739231, GSM3739232, GSM3739233, GSM3739234, GSM3739235, GSM3739236, GSM3739237, GSM3739238, GSM3739239, GSM3739240, GSM3739241, GSM3739242, GSM3739243, GSM3926543, GSM3926544, GSM3965406, GSM3965407, GSM3965408, GSM3965409, GSM3965410, GSM3965411, GSM3965412, GSM3965413, GSM3965414, GSM3965415, GSM3965416, GSM3965417, GSM3965418, GSM3965419, GSM3965420, GSM3965421, GSM3965422, GSM3965423, GSM3965424, GSM3965425, GSM3965426, GSM3965427, GSM3965428, GSM3965429, GSM4055695, GSM4055696, GSM4055697, GSM4055698, GSM4055699, GSM4055700, GSM4138096, GSM4138097, GSM4138098, GSM4138099, GSM4138100, GSM4138101, GSM4138804, GSM4138805, GSM4138806, GSM4138807, GSM4138808, GSM4138809...
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| Series (108)
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| GSE87327 |
Diverse Patterns of N6-methyladenosine mRNA Methylation in Porcine Liver of Postnatal Development Stages |
| GSE87625 |
Comprehensive profiling of mRNA m6A methylome revealed by m6A-seq in porcine adipose and muscle tissues |
| GSE96640 |
Transcriptomic analysis of porcine peripheral blood reveals differentially expressed genes from the cytokine-cytokine receptor interaction pathway related to health status |
| GSE97738 |
Distal ileal antibiotic infusion affects the expressions of neurotransmitters in the hypothalamus of piglets |
| GSE99749 |
Integrating transcriptome and proteome profiles of prenatal muscle tissue to reveal the postnatal growth differences in pigsof Pig Muscle Tissue |
| GSE105797 |
Analyses of long non-coding RNA and mRNA profiling in the spleen of diarrhea piglets caused by Clostridium perfringens type C |
| GSE107474 |
Intestinal gene expression analysis in response to maternal dietary resveratrol supplementation in pig |
| GSE112527 |
Gene expression profiling of porcine skeletal muscle satellite cells after challenge with poly I:C |
| GSE113237 |
mRNA m6A regulates porcine intramuscular fat deposition via YTHDF1-dependent enhancement of MTCH2 translation |
| GSE114705 |
Intestinal necrotizing enterocolitis triggers hippocampal gene expression and neuronal differentiation in preterm neonates |
| GSE116263 |
Global Gene Networks in Porcine Alveolar Macrophage Cells, 3D4/31, Stimulated with Antigenic Epitopes of Actinobacillus pleuropneumoniae ApxIA, IIA and IVA |
| GSE117414 |
Muscle transcriptome analysis of Duroc x Luchuan crossed pigs with extreme phenotypes of intramuscular fat content using RNA sequencing |
| GSE119137 |
Comprehensive analysis of lncRNAs and circRNAs reflects the functional specialization in oxidative and glycolytic skeletal muscles |
| GSE121980 |
Differentially expressed miRNAs and tRNA genes effect host homeostasis during highly pathogenic PRRSV infections in young pigs |
| GSE123590 |
Comprehensive transcriptional profiling of porcine liver aging |
| GSE124315 |
Genome-wide analysis of expression QTL (eQTL) and allele-specific expression (ASE) in pig muscle identifies candidate genes for meat quality traits |
| GSE129994 |
Transcriptome profiles of porcine oocytes with different developmental competence |
| GSE130471 |
Analyses of miRNA in the ileum of diarrheic piglets caused by Clostridium perfringens type C |
| GSE133747 |
Single-cell connectomic analysis of adult mammalian lungs |
| GSE134739 |
Hydrolyzed Fat Formula Increases Brain White Matter in Small for Gestational Age and Appropriate for Gestational Age Neonatal Piglets |
| GSE136705 |
Expression profiles of long noncoding RNAs and mRNAs in ST cells infected by PDCoV |
| GSE139322 |
LncRNA profiling of skeletal muscles related to muscle metabolism at QingYu pig growth inflection point |
| GSE139366 |
Intestinal response to prenatal inflammation |
| GSE139424 |
Expression profiles of circularRNAs and microRNAs in PK-15 cells infected by PrV-II |
| GSE140412 |
Hypercholesterolemia induces vascular immune responses to accelerate atherosclerosis progression in high fat diet-fed Tibetan minipigs |
| GSE141541 |
Transcriptome profiling of porcine testis reveals genes related to sperm hyperactive motility |
| GSE142194 |
Transcriptome-wide dynamics of m6A mRNA methylation during porcine spermatogenesis |
| GSE142346 |
Hepatic transcriptome response to high dietary cholesterol intake in pig NAFLD model |
| GSE142410 |
Stage-specific embryonic antigen 4 is a specific marker for high-efficient enrichment of porcine SSCs |
| GSE143296 |
RNA sequencing of porcine smooth muscle cells, after treatments with platelet derived growth factor and S100A4 protein |
| GSE145302 |
Identification of miRNAs regulating Clostridium perfringens type C infection in the spleen of diarrheic piglets |
| GSE147979 |
Multi-species single-cell transcriptomic analysis of ocular compartment regulons |
| GSE150211 |
Single cell RNA sequencing of large and small airway surface epithelium in newborn cystic fibrosis (CF) and non-CF pigs |
| GSE152145 |
Early Pathogenesis of Cystic Fibrosis Gallbladder Disease in a Porcine Model |
| GSE152643 |
Characterization and Analysis of Whole Transcriptome of Ningxiang Pig Spleens Reveal Potential Mechanism for Transcriptional Regulation in Immunity [RNA-Seq] |
| GSE152644 |
Characterization and Analysis of Whole Transcriptome of Ningxiang Pig Spleens Reveal Potential Mechanism for Transcriptional Regulation in Immunity |
| GSE155136 |
Specification and epigenomic resetting of the pig germline exhibit conservation with the human lineage |
| GSE155260 |
EZH2 RIP-seq identifies pNEAT1 as regulator of myogenesis in pigs |
| GSE156078 |
Transcriptome-wide m6A methylome of intestinal porcine epithelial cells (IPEC-J2) induced by deoxynivalenol |
| GSE158245 |
The response of intestinal microbiota and immunity to increasing dietary iron in piglets |
| GSE158416 |
Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (CTCF ChIP-Seq) |
| GSE158418 |
Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (H3K27ac ChIP-Seq) |
| GSE158419 |
Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (H3K27me3 ChIP-Seq) |
| GSE158427 |
Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (H3K4me1 ChIP-Seq) |
| GSE158429 |
Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (H3K4me3 ChIP-Seq) |
| GSE158430 |
Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility |
| GSE158878 |
Fecal filtrate transfer protects against necrotizing enterocolitis in preterm pigs |
| GSE161123 |
Nitric oxide prevents aortic valve calcification by S-nitrosylation of USP9X to activate NOTCH signaling |
| GSE161554 |
1α,25-Dihydroxyvitamin D3 encapsulated in Nanoparticles Prevents Venous Neointimal Hyperplasia and Stenosis in Porcine Arteriovenous Fistulas |
| GSE164691 |
Transcriptome-wide m6A profiling reveals mRNA post-transcriptional modification of boar sperm during cryopreservation |
| GSE165613 |
Candidate gene screening for lipid deposition combining transcriptomic and proteomic data in Nanyang Black pig |
| GSE166000 |
Identification and functional annotation of circular RNA in young and sexually mature boar testicles |
| GSE167643 |
A Porcine Model of Heart Failure With Preserved Ejection Fraction Induced by Chronic Pressure Overload Characterized by Cardiac Fibrosis and Remodeling |
| GSE168105 |
Generation and Characterization of Stable Pig Pre-gastrulation Epiblast Stem Cell Lines [RNA-seq] |
| GSE168107 |
Generation and Characterization of Stable Pig Pre-gastrulation Epiblast Stem Cell Lines |
| GSE171756 |
Raw datas of the transcriptome in testes of Hezuo pigs and Landrace pigs at two different ages |
| GSE171810 |
Transcriptomic characteristics underpin enhanced skeletal muscle mass, reduced fat accumulation and metabolically benign liver in human follistatin-344 transgenic pigs |
| GSE172074 |
Effects of a single dose of psilocybin on behaviour, brain 5-HT2A receptor occupancy and gene expression in the pig |
| GSE173928 |
Effects of aneurysmal low and supra-high wall shear stress on endothelial gene expression |
| GSE174782 |
Single-cell RNA sequencing reveals dynamic process and novel markers in porcine spermatogenesis |
| GSE175615 |
Conservation and divergence of DNA methylation patterns and functions in vertebrates |
| GSE176387 |
Three-dimensional geome study of procine livers during development and metabolic adaptation |
| GSE179183 |
Transcriptome data of APP infected and healthy pig PBMCs |
| GSE183448 |
Cellular Recovery After Prolonged Warm Ischemia of the Whole Body |
| GSE185289 |
Single nucleus transcriptomics: Apical resection in newborn pigs extends the time-window of cardiomyocyte proliferation and myocardial regeneration |
| GSE185849 |
Single-cell RNA sequencing of airway submucosal glands in wild-type and cystic fibrosis Pigs |
| GSE186538 |
Transcriptomic Taxonomy and Neurogenic Trajectories of Adult Human, Macaque and Pig Hippocampal and Entorhinal Cells |
| GSE189135 |
In vivo lentiviral vector gene therapy to cure hereditary tyrosinemia type 1 and prevent development of precancerous and cancerous lesions |
| GSE190069 |
LGR5 is a conserved marker of hair follicle stem cells across species |
| GSE190291 |
Transcriptomic and chromatin accessibility analyses of porcine alveolar macrophages exposed to Fumonisin B1 |
| GSE190849 |
Disrupting Mechanotransduction Decreases Fibrosis and Contracture in Porcine Split Thickness Skin Grafting |
| GSE191175 |
Effect of dynamic compression on meniscus tissue explants in the presence and absence of IL-1 |
| GSE192605 |
RNA-Seq in porcine ovaries treated with recombinant pig follicle-stimulating hormone (rpFSH) |
| GSE192690 |
The difference between diarrhea piglets and normal piglets |
| GSE192740 |
Spatial proteogenomics reveals distinct and evolutionarily-conserved hepatic macrophage niches (single cells) |
| GSE192742 |
Spatial proteogenomics reveals distinct and evolutionarily-conserved hepatic macrophage niches |
| GSE197014 |
Transcriptomic Analysis of Liver Indicates Novel Vaccine to Porcine Reproductive and Respiratory Virus Promotes Homeostasis in T-Cell and Inflammatory Immune Responses Compared to Commercial Vaccine in Pigs |
| GSE198623 |
A transcriptional cross species map of pancreatic islet cells |
| GSE199592 |
ITGB2 is a Central Hub-Gene Associated with Early Fibro-Atheroma Development in A Swine Model of Atherosclerosis |
| GSE200123 |
Hepatic irradiated pigs develop radiation induced veno-occlusive liver disease with ferroptosis |
| GSE200124 |
Reversal of post-hepatectomy liver failure using a bioartifical liver supporting system implanted with clinical-grade human induced hepatocytes |
| GSE205321 |
Early life exposure of pigs to topsoil alters miRNA and mRNA expression in peripheral blood mononuclear cells |
| GSE206156 |
The evolutionarily conserved gene Arrdc5 is required for male fertility in mice |
| GSE207258 |
LncRNA affects epigenetic reprogramming of porcine embryo development by regulating global epigenetic modification |
| GSE207279 |
The expression profiles of longissimus dorsi muscle from six Laiwu pigs (three with extremely high and three with extremely low intramuscular fat content). |
| GSE216950 |
Obesity and dyslipidemia are associated with partially reversible modifications to DNA hydroxymethylation in swine adipose-derived mesenchymal stem/stromal cells [Sus scrofa] |
| GSE216953 |
Obesity and dyslipidemia are associated with partially reversible modifications to DNA hydroxymethylation of apoptosis- and senescence-related genes in swine adipose-derived mesenchymal stem/stromal cells |
| GSE218657 |
Transgenic porcine model reveals two roles for LGR5 during lung development and homeostasis [Bulk RNA-seq] |
| GSE218658 |
Transgenic porcine model reveals two roles for LGR5 during lung development and homeostasis |
| GSE219031 |
Retinoic acid-induced differentiation of porcine spermatogonia in vitro |
| GSE219158 |
Mechanotransduction inhibition prevents scarring and yields regeneration in a large animal model |
| GSE221892 |
Generation of stable integration-free pig induced pluripotent stem cells under WNT-inhibited condition |
| GSE223433 |
Generation of three-dimensional meat-like tissue from stable pig epiblast stem cells |
| GSE225056 |
Transcriptional profiling of mammalian preimplantation embryos |
| GSE226141 |
SnRNA-seq of pancreas revealed the dysfunction of endocrine and exocrine cells in transgenic pig with prediabetes |
| GSE227725 |
Evaluation of the effect of maternal immune activation and weaning on hypothalamus of 22 day old pigs |
| GSE230288 |
TFAP2C affects epigenetic reprogramming of porcine embryo development by regulating global epigenetic modification |
| GSE239494 |
Transcriptomics of pig vascular endothelial cells by D-malate treatment |
| GSE245146 |
Evaluation of the effect of maternal immune activation and juvenile distress on hypothalamus of 60 day old pigs |
| GSE245458 |
Single-nucleus Transcriptomics Reveals Cardiac Cell Type-specific Diversification in Metabolic Disease Transgenic Pigs |
| GSE247561 |
YTHDF2 mediates the action of BDNF stimulating proliferation of porcine follicle granulosa cells |
| GSE249237 |
Cellular Communication Networks in Fibrosis: Single-nucleus Transcriptomic Insights from the MAFLD Pig Model |
| GSE249819 |
The Single-Cell Landscape of Spermioteleosis in Mouse and Pig |
| GSE264016 |
Porcine Rotavirus VP6 Protein Wrests IPEC-J2 METTL3-Mediated M6A Modification to Fight Antiviral Immune Response |
| GSE269522 |
Identification of Circular RNAs Regulating Cardiomyocyte Proliferation in Neonatal Pig Hearts |
| GSE275100 |
Meniscus Gene Expression Profiling: Inner and Outer Zone Tissue Comparison to Cartilage and Passaged Monolayer Meniscus Cells |
| GSE291275 |
Activation of the ERRα Transcriptional Pathway Alleviates Anthracycline-induced Cardiotoxicity by Improving Mitochondrial Metabolism |
| GSE291450 |
Activation of the ERRα Transcriptional Pathway Alleviates Anthracycline-induced Cardiotoxicity by Improving Mitochondrial Metabolism |
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| Supplementary data files not provided |
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