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GEO help: Mouse over screen elements for information. |
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Status |
Public on Mar 16, 2003 |
Title |
STv2_MMCC |
Technology type |
spotted DNA/cDNA |
Distribution |
non-commercial |
Organism |
Salmonella enterica |
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Description |
Custom made Salmonella array
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Contributor(s) |
Porwollik S, Frye JG, McClelland M, Blackmer F |
Submission date |
Dec 12, 2002 |
Last update date |
Jun 07, 2006 |
Contact name |
Michael McClelland |
E-mail(s) |
mcclelland.michael@gmail.com
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Phone |
858-336-9554
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Organization name |
University of California, Irvine
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Department |
Microbiology & Molecular Genetics
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Street address |
132 Med Surge I
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City |
Irvine |
State/province |
CA |
ZIP/Postal code |
92697 |
Country |
USA |
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Samples (636)
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GSM3164, GSM3165, GSM3166, GSM3167, GSM3168, GSM3169
GSM3170, GSM3171, GSM3172, GSM3173, GSM3174, GSM3175, GSM3176, GSM3177, GSM3178, GSM3179, GSM3180, GSM3181, GSM3190, GSM3191, GSM3192, GSM3193, GSM3194, GSM3195, GSM3196, GSM3197, GSM3198, GSM3199, GSM3200, GSM3201, GSM3202, GSM3203, GSM3204, GSM3205, GSM3206, GSM3207, GSM3208, GSM3209, GSM3210, GSM3211, GSM3212, GSM3213, GSM9480, GSM9481, GSM9482, GSM9483, GSM9484, GSM9485, GSM9486, GSM9487, GSM9488, GSM9490, GSM9491, GSM9492, GSM9493, GSM9494, GSM9495, GSM9496, GSM9497, GSM9498, GSM9499, GSM9500, GSM9501, GSM9502, GSM9503, GSM9504, GSM9505, GSM9506, GSM9507, GSM9508, GSM9509, GSM9510, GSM9511, GSM9512, GSM9513, GSM9531, GSM9533, GSM9535, GSM9538, GSM9540, GSM9541, GSM9542, GSM9543, GSM9544, GSM9545, GSM9546, GSM9547, GSM9548, GSM9549, GSM9550, GSM9551, GSM9552, GSM9553, GSM10520, GSM10521, GSM10522, GSM11613, GSM11614, GSM11615, GSM11619, GSM11620, GSM11621, GSM11622, GSM11623, GSM11624, GSM11635, GSM11636, GSM11637, GSM11647, GSM11648, GSM11649, GSM11656, GSM11657, GSM11658, GSM11662, GSM11663, GSM11664, GSM11665, GSM11666, GSM11667, GSM11668, GSM11669, GSM11670, GSM11671, GSM11672, GSM11673, GSM11674, GSM11675, GSM11676, GSM11677, GSM11678, GSM11679, GSM11717, GSM11718, GSM11719, GSM11784, GSM11785, GSM11786, GSM11787, GSM11788, GSM11789, GSM11792, GSM11793, GSM11794, GSM11796, GSM11797, GSM11798, GSM11800, GSM11801, GSM11802, GSM11806, GSM11807, GSM11808, GSM11811, GSM11812, GSM11813, GSM11817, GSM11818, GSM11819, GSM11820, GSM11821, GSM11822, GSM11824, GSM11825, GSM11826, GSM11867, GSM11868, GSM11869, GSM11875, GSM11876, GSM11877, GSM11889, GSM11890, GSM11891, GSM11892, GSM11893, GSM11894, GSM11897, GSM11898, GSM11899, GSM12441, GSM12442, GSM12443, GSM12452, GSM12453, GSM12454, GSM12455, GSM12456, GSM12457, GSM12458, GSM12459, GSM12460, GSM12461, GSM12462, GSM12463, GSM15984, GSM15985, GSM15986, GSM15987, GSM15988, GSM15989, GSM15990, GSM15991, GSM15992, GSM15993, GSM15994, GSM15995, GSM16044, GSM16045, GSM16046, GSM16056, GSM16058, GSM16059, GSM16102, GSM16103, GSM16104, GSM16105, GSM16106, GSM16107, GSM16238, GSM16239, GSM16240, GSM16241, GSM16242, GSM16243, GSM16246, GSM16247, GSM16248, GSM16251, GSM16252, GSM16253, GSM16260, GSM16261, GSM16262, GSM16263, GSM16264, GSM16265, GSM16266, GSM16267, GSM16268, GSM16269, GSM16270, GSM16271, GSM16272, GSM16273, GSM16274, GSM16275, GSM16276, GSM16277, GSM16278, GSM16279, GSM16280, GSM16281, GSM16282, GSM16283, GSM16284, GSM16285, GSM16286, GSM16310, GSM16311, GSM16312, GSM16313, GSM16314, GSM16315, GSM16316, GSM16317, GSM16318, GSM16319, GSM16320, GSM16321, GSM16322, GSM16323, GSM16324, GSM16325, GSM16326, GSM16327, GSM16329, GSM16330, GSM16331, GSM16412, GSM16413, GSM16414, GSM16415, GSM16416, GSM16417, GSM16419, GSM16420, GSM16421, GSM16422, GSM16423, GSM16424, GSM16425, GSM16426, GSM16427, GSM16428, GSM16429, GSM16430, GSM16431, GSM16432, GSM16433, GSM16434, GSM16435, GSM16436, GSM16437, GSM16438, GSM16439, GSM16440, GSM16441, GSM16442, GSM16443, GSM16444, GSM16445, GSM16446, GSM16447, GSM16448, GSM16590, GSM16591, GSM16592, GSM16594, GSM16595, GSM16596, GSM16597, GSM16598, GSM16599, GSM16600, GSM16601, GSM16602, GSM16603, GSM16604, GSM16605, GSM16606, GSM16607, GSM16608, GSM16610, GSM16611, GSM16612, GSM16616, GSM16617, GSM16618, GSM16620, GSM16621, GSM16622, GSM16623, GSM16624, GSM16625, GSM16626, GSM16627, GSM16628, GSM16629, GSM16630, GSM16631, GSM16632, GSM16633, GSM16634, GSM16669, GSM16670, GSM16671, GSM16672, GSM16673, GSM16674, GSM16676, GSM16677, GSM16678, GSM16682, GSM16683, GSM16684, GSM16696, GSM16697, GSM16698, GSM16701, GSM16702, GSM16703, GSM16707, GSM16708, GSM16709, GSM16710, GSM16711, GSM16712, GSM16713, GSM16714, GSM16715, GSM16716, GSM16717, GSM16718, GSM16728, GSM16729, GSM16730, GSM16731, GSM16732, GSM16733, GSM16734, GSM16735, GSM16736, GSM16737, GSM16738, GSM16739, GSM16740, GSM16741, GSM16742, GSM16743, GSM16744, GSM16745, GSM16746, GSM16747, GSM16748, GSM16751, GSM16752, GSM16753, GSM16889, GSM16890, GSM16891, GSM18519, GSM18520, GSM18521, GSM18522, GSM18523, GSM18524, GSM18525, GSM18526, GSM18527, GSM23101, GSM23102, GSM23103, GSM23105, GSM23106, GSM23107, GSM23108, GSM23109, GSM23110, GSM23123, GSM23124, GSM23125, GSM23126, GSM23127, GSM23128, GSM23129, GSM23130, GSM23131, GSM23132, GSM23133, GSM23134, GSM23135, GSM23136, GSM23137, GSM23138, GSM23139, GSM23140, GSM23141, GSM23142, GSM23143, GSM23144, GSM23145, GSM23146, GSM23147, GSM23148, GSM23149, GSM23150, GSM23151, GSM23152, GSM23153, GSM23154, GSM23155, GSM23156, GSM23157, GSM23158, GSM23333, GSM23334, GSM23335, GSM23336, GSM23337, GSM23338, GSM23339, GSM23340, GSM23341, GSM23342, GSM23343, GSM23344, GSM23345, GSM23346, GSM23347, GSM23348, GSM23349, GSM23350, GSM23351, GSM23352, GSM23353, GSM23354, GSM23355, GSM23356, GSM23357, GSM23358, GSM23359, GSM23360, GSM23361, GSM23362, GSM23363, GSM23364, GSM23365, GSM23366, GSM23367... Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here
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Series (32)
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GSE116 |
TY2_hydrogen_peroxide_2mM_RNA |
GSE622 |
LT2_MitomycinC_2ug/ml_RNA |
GSE623 |
14028s_hydrogen_peroxide_2mM_RNA |
GSE624 |
LT2_hydrogen_peroxide_2mM_DNA |
GSE625 |
SL1344_hydrogen_peroxide_2mM_DNA |
GSE806 |
LT2_hydrogen_peroxide_2mM_RNA |
GSE810 |
LT2_mitomycinC_2ug/ml_DNA |
GSE811 |
14028s_hydrogen_peroxide_2mM_DNA |
GSE812 |
CT18_MitomycinC_2ug/ml_DNA |
GSE813 |
DT104_hydrogen_peroxide_2mM_DNA |
GSE814 |
TA100_hydrogen_peroxide_2mM_RNA |
GSE815 |
TA100_hydrogen_peroxide_2mM_DNA |
GSE816 |
TAQ100F1_hydrogen_peroxide_2mM_DNA |
GSE817 |
TAQ100F2_hydrogen_peroxide_2mM_DNA |
GSE818 |
TAQ100F2_mitomycinC_2ug/ml_DNA |
GSE819 |
S.enterica_log_vs_overnight_DNA |
GSE820 |
CT18_Rifampicin_125ug/ml_DNA |
GSE821 |
TY2_Rifampicin_125ug/ml_DNA |
GSE822 |
TY2_Chloramphenicol_300ug/ml_RNA |
GSE823 |
TAQ100F2_hydrogen_peroxide_2mM_RNA |
GSE824 |
TY2_hydrogen_peroxide_2mM_DNA |
GSE825 |
SARB48_hydrogen_peroxide_2mM_DNA |
GSE1035 |
Genomic comparisons of Salmonella enterica sspI strains |
GSE1625 |
14028 time course on swarming plates |
GSE1630 |
14028 time course in broth medium |
GSE1631 |
14028 time course on non-swarming plates |
GSE1632 |
14028 versus che mutants |
GSE1633 |
growth culture comparisons |
GSE2340 |
14028 cheY mutant time course expression on plate |
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Data table header descriptions |
ID |
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ARRAY_ROW |
subarray row |
ARRAY_COLUMN |
subarray column |
ROW |
spot row |
COLUMN |
spot column |
NEW_CHIP_ID |
CHIP#as of 020901 |
OLD_CHIP_ID |
previous CHIP# |
SPOT_ID |
Spot identifier |
SEQUENCE |
amplified sequence in spot |
ORF |
first STY CT18 gene represented (>97%ID over 100bp & >90% over entire fragment) |
SECONDARY_CT18_GENES |
further CT18 genes represented (>97%ID over 100bp & >90% over entire fragment) |
SINGLE_CRITERIUM_CT18_GENES |
more CT18 genes represented (>97%ID over 100bp OR >90% over entire fragment) |
ORF2 |
first STY CT18 gene represented (>97%ID over 100bp & >90% over entire fragment) |
SECONDARY_LT2_GENES |
further LT2 genes represented (>97%ID over 100bp & >90% over entire fragment) |
SINGLE_CRITERIUM_LT2_GENES |
more LT2 genes represented (>97%ID over 100bp & >90% over entire fragment) |
GENE_REPRESENTATION |
any gene represented by spot?? |
Total number of rows: 5184
Table truncated, full table size 2379 Kbytes.
Supplementary data files not provided |
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