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Platform GPL224 Query DataSets for GPL224
Status Public on Mar 16, 2003
Title STv2_MMCC
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Salmonella enterica
 
Description Custom made Salmonella array
 
Contributor(s) Porwollik S, Frye JG, McClelland M, Blackmer F
Submission date Dec 12, 2002
Last update date Jun 07, 2006
Contact name Michael McClelland
E-mail(s) mcclelland.michael@gmail.com
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Samples (636) GSM3164, GSM3165, GSM3166, GSM3167, GSM3168, GSM3169 
Series (32)
GSE113 CT18_LT2_STv2
GSE114 CT18_log_overnight_1
GSE115 LT2_log_overnight_1

Data table header descriptions
ID
ARRAY_ROW subarray row
ARRAY_COLUMN subarray column
ROW spot row
COLUMN spot column
NEW_CHIP_ID CHIP#as of 020901
OLD_CHIP_ID previous CHIP#
SPOT_ID Spot identifier
SEQUENCE amplified sequence in spot
ORF first STY CT18 gene represented (>97%ID over 100bp & >90% over entire fragment)
SECONDARY_CT18_GENES further CT18 genes represented (>97%ID over 100bp & >90% over entire fragment)
SINGLE_CRITERIUM_CT18_GENES more CT18 genes represented (>97%ID over 100bp OR >90% over entire fragment)
ORF2 first STY CT18 gene represented (>97%ID over 100bp & >90% over entire fragment)
SECONDARY_LT2_GENES further LT2 genes represented (>97%ID over 100bp & >90% over entire fragment)
SINGLE_CRITERIUM_LT2_GENES more LT2 genes represented (>97%ID over 100bp & >90% over entire fragment)
GENE_REPRESENTATION any gene represented by spot??

Data table
ID ARRAY_ROW ARRAY_COLUMN ROW COLUMN NEW_CHIP_ID OLD_CHIP_ID SPOT_ID SEQUENCE ORF SECONDARY_CT18_GENES SINGLE_CRITERIUM_CT18_GENES ORF2 SECONDARY_LT2_GENES SINGLE_CRITERIUM_LT2_GENES GENE_REPRESENTATION
1 1 1 1 1 CTRL001 CTRL001 LT2 gDNA Cy3 labeled 0
2 1 1 1 2 CHIP0785 CHIP0785 ATGGCAGCAATACAGGGGATTGAAGGGGTTATTAGCCAGTTACAGGCGACGGCGATGGCCGCGCGCGGGCAAGACACGCACTCGCAGTCGACGGTGAGTTTTGCCGGCCAGCTACATGCTGCGCTGGATCGTATTAGCGACAGACAAGCGGCGGCGCGCGTTCAGGCGGAAAAATTCACTCTGGGTGAGCCGGGCATTGCGCTTAATGACGTGATGGCCGATATGCAAAAAGCGTCCGTCTCTATGCAAATGGGGATTCAGGTGCGCAACAAGCTGGTCGCCGCGTATCAGGAAGTCATGTCCATGCAGGTTTAA STY2176 STM1968 1
3 1 1 1 3 CHIP0801 CHIP0801 ATGTCATTCAGTCGGCGTCAGTTTCTTCAGGCATCGGGAATCGCACTATGTGCAGGCGCGATTCCCCTCAGGGCGAATGCTGCCGGTCAGCAACAGCCGTTGCCTGTTCCGCCGTTGCTGGAGTCCCGTCGCGGGCAGCCGTTGTTTATGACGCTACAGCGAGCGCACTGGTCCTTTACGCAAGGCACGCGCGCGCCGGTCTGGGGAGTGAACGGTCGTTATCTGGGGCCGACAATCCGCGTCTGGAAAGGCGAT STY3349 STM3172 1
4 1 1 1 4 CHIP0817 CHIP0817 ATGACCGGGCTTGATCGACTCAGCTATCAAAGCCGCTGGGCACACGTTGCGCCGCAGCGCAAGTTTTTGCTGTGGCTGGCGATGATGATACTGGCGTTTGTTCTGCCGCCTGTAGGGCAGGGCATTGAGCTGCTGATCATTGCCGGATTGAGCTGTTGGCTATTGCGCATATCCCTCTGGCGCTGGTGTCGATGGATGGCGATACCTTTTAGATTTTTGTTGGTCGGCGTGATAACGATTATCTTCAGCATCAGCCGCGAGCCGCAAATGCTGCTGGCTGGCATATCTGTTGGGCCGTACTGGATCGGGATTACCCGTGCGGGCGTGGTTACGGCGAATGAAACGTTCTGGCGTAGCCTGACGGCGCTGTCCGCGACGTTGTGGCTGGTGATGAACCTACCGTTTCCGCAGTTAATTAGCTTGCTTAAGCGCGCGCATATTCCACGCCTGCTTACCGAGCAAATCCTGTTAACGTGGCGCTTTCTCTTTATTCTTCTGGATGAGGCGGTGGCAATCCGTCGTGCGCAAACGCTGCGTTTTGGTTATTGCAGCCTGCCGAACGGCTATCGATCTCTGGCGATGCTGGCTGGACTCCTGTTTACGCGGGTGTTAATGCGTTATCAGCAAATGACCACCACGCTGGATATCAAACTGTATCAGGGTGATTTTCACCTGTAA STY2224 STM2021 1
5 1 1 1 5 CHIP2648 CHIP2648 ATGGATAGCCATACTCTACTGCAGGCGCTGATCTATCTTGGTTCGGCGGCGTTGATTGTGCCGATTGCGGTACGTTTGGGCTTAGGATCGGTGCTGGGGTATCTGATTGCGGGTTGCATTATCGGTCCCTGGGGGCTACGGCTGGTGACGGACGCCGAATCTATTCTGCATTTTGCGGAAATCGGCGTCGTGCTGATGTTGTTTGTTATTGGACTTGAGCTGGACCCGCAACGGTTATGGAAGCTGCGCGCCTCG STY0101 STM0086 1
6 1 1 1 6 CHIP2672 CHIP2672 ATGCGTATTGAAGAAGATCTGAAGTTAGGTTTCAAAGACGTTCTTATCCGTCCTAAGCGTTCTACCCTCAAAAGCCGTTCCGATGTCGAACTGGAACGTCAATTCACCTTTAAACACTCAGGTCAGACCTGGTCTGGCGTACCGATTATCGCGGCCAATATGGATACCGTCGGGACGTTTGAAATGGCGCAAGCATTGGCCGGGTTTGATATTCTGACTGCTGTACATAAACATTATACCGTTGAAGAATGGGCA STY0163 STM0141 1
7 1 1 1 7 CHIP2666 CHIP2666 ATGAGTGGTCAACCGAAGCGGTTAATGGTGATGGCGGGCGGTACCGGCGGGCACGTGTTCCCGGGACTGGCCGTTGCGCATCATTTAATGGCCCAGGGCTGGCAGGTTCGCTGGCTGGGTACCGCCGATCGTATGGAAGCGGATTTAGTGCCGAAGCATGGCATCGACATTGACTTTATTCGGATCTCCGGTCTACGCGGTAAAGGCGTAAAAGCGCTTCTGGCGGCGCCGCTGCGGATTTTTAACGCCTGGCGG STY0148 STM0128 1
8 1 1 1 8 CHIP2682 CHIP2682 ATGAACATCAAAAAAGCAATAGAGCGCGTACCCGGCGGCATGATGGTCGTACCGCTCGTTATTGGCGCAGTCATTAACACCTTCGCCCCGCAGGCGCTTGAGATCGGCGGTTTTACCACTGCCTTATTTAAAAACGGCGCGGCACCGCTGATTGGCGCTTTTCTGCTGTGTATGGGAGCCGGTATCAGTGTGAAAGCCGCGCCCCAGGCGTTATTGCAGGGCGGGACGATTACGCTCACTAAGTTGCTTGTCGCC STY0183 STM0161 1
9 1 1 1 9 CHIP2698 CHIP2698 ATGACGATCGCGTATATCGCGCTTGGCAGTAATCTGGCCTCTCCGCTGGAGCAGGTCAATGCCGCCCTGAAGGCTATCGCCGACATTCCCGATAGCCGTATCGTCGCGGTTTCTTCGTTTTACCGCACGCCGCCGCTTGGCCCACAGGATCAGCCCGATTACCTGAACGCTGCGGTGGCGCTGGATACCGCTCTCGCCCCCGAAGAATTGCTTAACCATACCCAGCGCATTGAGCTGCAACAGGGCCGGGTGCGCAAAGCCGAACGCTGGGGGCCGCGCACGCTGGATCTCGACATTATGCTGTTTGGCGATGAAGTCATTAACACCGACCGTCTGACCGTGCCGCACTACGACATGAAAAACCGCGGTTTTATGCTGTGGCCGTTATTCGAAATCGCTCCTGATCTGATCTTTCCGGATGGTATCAGCCTGCATCAGCATCTCACCCATCTTGGTGCTGCAAAACCCGCCCACTGGTAA STY0208 STM0183 1
10 1 1 1 10 CHIP2714 CHIP2714 ATGGCTATCTCTATCAAGACATCTGAAGACATCGAAAAAATGCGCGTCGCGGGCCGTCTGGCAGCCGAAGTGCTGGAAATGATCGAACCGTATATCAAACCGGGCGTCACCACCGGCGAACTGGACCGTATCTGTAACGATTACATCGTTAACGAACAACACGCGATCTCCGCCTGCCTCGGCTATCACGGTTATCCGAAATCCGTCTGTATCTCTATTAATGAAGTGGTGTGCCACGGCATTCCGGATGACGCTAAACATCTGAAAGATGGTGATATCGTCAACATCGACGTGACCGTGATTAAAGATGAATTCCACGGCGATACCTCGAAGATGTTTATCGTCGGCAAACCGACCATTCTCGGCGAGCGTCTGTGCCGCGTCACGCAAGAGAGCCTGTATCTGGGCATCAAAATGGTGAAACCGGGCATCCGCCTGCGCACCATTGGCGCCGCCATCCAGAAATATGCCGAAGGCGAAGGTTTCTCCGTGGTACGTGAATACTGCGGACACGGTATTGGTCGCGGCTTCCATGAAGAACCGCAGGTGCTGCATTATGATGCAGACGATGGCGGCGTCGTGTTGCAGCCTGGCATGACCTTTACCATTGAACCGATGCTGAACGCCGGGGATTACCGTATCCGCACCATGAAAGACGGCTGGACGGTGAAAACCAAAGATCGCAGCTTGTCTGCTCAGTACGAGCATACTATTGTGGTAACGGAAAACGGCTGTGAAATTCTGACGCTGCGTAAAGATGACACCATCCCGGCGATCATCACACACGACGAATAA STY0238 STM0215 1
11 1 1 1 11 CHIP2730 CHIP2730 ATGATTAAACTTTCGAATATTACCAAAGTGTTCCAGCAGGGGACGCGCACCATTCAGGCGCTAAATAATGTCAGCCTGCACGTTCCTGCCGGGCAGATTTATGGCGTCATTGGCGCCTCCGGCGCCGGTAAAAGTACGCTTATCCGCTGCGTTAACTTACTTGAACGCCCAACCGAAGGTAGCGTTCAGGTCGGCGGTCAGGAGCTAACAACGCTTTCAGAGTCTGAGTTGACCAAAGCTCGCCGTCAAATCGGC STY0274 STM0247 1
12 1 1 1 12 CHIP2746 CHIP2746 GTGCAAAGATTGACCGTCTATTCTCACCCGCTACGGATTATCTGGCAGGAGGCGCCGATCGGTCGTTTGTTACAGGGCGCAACGCCGGTATACGCAAAAACGCTTATTTCACGTTTGTTTACGTTGTGCGCTCAGGCGCACAGCGCGGCGGCGGCTTTACTGTTGTTTCCTGAAAAGAAGCCAGATATGCAGGCCGCACAACAAGAGCTGGCGCGAGAAACGCTCCGTCGCGCGTTGACAGACTGGCTCCCCCTGTTTAGCCACCGACAGGCAACCGCTGAAGAATGGGCGTTGTTACGTCGCGGAGAGTTATCCCCGCTGGCAAGCACAATCTTTTTTGACGATGATCCTCAGACCTGGCTTGCCGCTGGCGTAAAGGGCTGGGAAGCCTGGTTTTTGCAAGAGCGTTCTGAAACCGCCCGCTGGCTGGCGGCAGTACAGAATATCATTACACCTACACTACCGATGGCATCGTCCCCGGACCATACGTTAATAACCCATGGTCCCCTGGATGTCTCGCCTCTGGCTATCGAATATCCGCTGCTGTCAGCCTGTTGTCTTAGCGGTAAAACGACTGCGCTACGTCTGCTGGCCCGCTGCATTACGCTCGCCCGAAGTTTGAGCGCCCTTCCCACCCTGCGCTGGAATCGTTTTGATGATGGCGAATGGAAAATAGCGGTAGTGGAAACCGCGCGAGGATGGTTAGTTCATCAGGCCAGACTGACGACGTCAGGCAATATTCTTGATTACCGTATTATCTCGCCTACCACACGTCACGCCCAACCTGACGGCGTCATTGCTCGCGAACTGGCCACTATTCCACTCTCATTGTGGTCGCAACAGTTACAGGTAATTGATCCTTGTGTCGCCGTAAATATTGTTGAATGA STY1531 STM1532 1
13 1 1 1 13 CHIP3308 CHIP3308 ATGAATATTTTAGGTTTTTTCCAGCGGCTGGGTAGGGCGTTGCAGCTCCCTATCGCCGTGTTGCCGGTGGCAGCGTTGTTGCTGCGATTCGGCCAACCAGATTTGCTGAATATGCCGTTTATCGCGCAAGCGGGCGGGTCTATTTTCGATAACCTGGCGCTGGTTTTCGCTATCGGCGTGGCCTCCAGTTGGTCTAAAGATAGCGCGGGCGCGGCAGCGCTGGCGGGAGCCGTGGGTTACTTCGTCATGACCAAA STY0723 STM0685 1
14 1 1 1 14 CHIP3324 CHIP3324 ATGAAAAACACCGAGCTGGAACAACTGATTAACGACAAGCTGAACAGTGCGGCAATAAGCGATTATGCGCCGAATGGTTTACAGGTCGAAGGAAAAGAGACGGTACAGAAAATCGTTACCGGCGTGACCGCAAGTCAGGCGCTGCTCGATGAGGCGGTGCGTTTGCAGGCCGATGCGGTCATTGTTCATCATGGTTACTTCTGGAAAGGCGAGTCTCCGGTTATTCGCGGCATGAAACGCCGTCGCTTAAAAACGTTACTGGCAAATGATATTAACCTTTACGGTTGGCATCTGCCGCTGGATGCGCACCCTGAGCTGGGCAACAATGCGCAGTTGGCGGCGCTATTGGGCATTACCGTGAAAGGAGAAATTGAGCCGCTGGTGCCGTGGGGAGAGCTCTCAATGCCGGTGCCAGGGCTGGAACTGGCCTCATGGATTGAAGCGCGTCTGGGGCGTAAACCGCTATGGTGCGGCGATACCGGGCCAGAGAATGTGCAGCGTGTCGCCTGGTGTACCGGCGGCGGGCAAAGTTTTATTGATAGCGCCGCCCGCTTCGGCGTGGATGCTTTCATTACCGGCGAGGTGTCTGAACAGACCATTCATTCCGCGCGCGAACAGGGGCTGCATTTTTATGCCGCCGGGCACCATGCCACTGAACGCGGCGGTATTCGCGCCCTGAGCGAATGGTTGAACGAAAACACGGCGTTGGATGTGACGTTTATTGATATCCCTAACCCGGCATAA STY0751 STM0711 1
15 1 1 1 15 CHIP0790 CHIP0790 ATGCTAAAAATCATTACCCGCCAGCTTTTTGCCCGGCTTAATCGTCATTTGCCTTATCGTCTGGTTCACCGCGATCCGCTGCCCGGCGCGCAGACCGCGGTAAATGCGACTATCCCGCCTTCGCTGAGCGAGCGCTGTCTGAAAGTCGCGGCAATGGAGCAGGAGACTCTCTGGCGCGTTTTTGATACGCACCCGGAGGGATTAAACGCTGCCGAGGTGACGCGCGCGCGTGAAAAGCATGGCGAAAACCGCCTT STY4796 STM4456 1
16 1 1 1 16 CHIP0806 CHIP0806 ATGAGCGAGCTTTCTTTTGACGCGCCGGTCTGGCACCACGGTAAAGCGTTACGTAAAGGATATACCACCGGTTCCTGCGCGACGGCGGCGGCAAAAGTCGCCGCGCTGATGGTATTACGTCAACATCTGATTCATCAGGTCTCCATCGTCACGCCGTCGGGCGTCACGCTATGCCTGAACGTGGAGTCGCCGCACATTGAAGGCCAGCAGGCGATAGCCGCAATTCGTAAAGATGGCGGCGATGACGTGGATGCC STY2237 STM2032 1
17 1 1 1 17 CHIP0822 CHIP0822 ATGGAATTTTTCAGACCTACAGAGTTGCGCGAAATTATTCCTCTCCCATTTTTCAGTTACTTAGTGCCGTGTGGATTCCCCAGCCCCGCGGCGGACTACATTGAGCAGCGTATCGATCTTAATGAGTTGCTCGTTTCTCATCCCAGCTCAACATATTTTGTCAAAGCCTCGGGGGATTCAATGATTGAAGCAGGCATCAGCGACGGTGACCTGCTGGTGGTGGATAGCTCACGGAACGCTGACCACGGTGACATTGTAATTGCGGCAATTGAAGGAGAGTTCACCGTAAAACGGTTGCAGTTGCGCCCGACAGTGCAGTTAATCCCCATGAACGGCGCCTATCGACCTATACCTGTCGGCAGTGAAGACACGCTCGACATATTCGGGGTGGTGACCTTTATCATTAAAGCGGTCAGTTGA STY2206 STM1998 1
18 1 1 1 18 CHIP0846 CHIP0846 ATGACACAATTCGCTTCTCCTGTTCTGCACTCGTTGCTGGATACAGATGCTTATAAGTTGCATATGCAGCAAGCCGTTTTTCACCACTACTATGATGTGCAGGTAGCGGCTGAGTTTCGTTGCCGTGGCGACGACCTGCTGGGTATTTATGCCGATGCTATTCGCGAGCAGGTGGACGCGATGCAGCACCTGCGCCTCCTGGAGGACGAGTTCCAGTGGCTCTCCGGCCTGCCCTTTTTTAAACCGGATTATCTG STY1010 STM1004 1
19 1 1 2 1 CHIP2583 CHIP2583 ATGGATTCGCAACGCAATCTTTTAGTCATCGCTTTGCTGTTCGTGTCTTTCATGATCTGGCAAGCCTGGGAGCAGGATAAAAATCCGCAACCTCAGACTCAACAGACCACGCAGACAACGACCACCGCAGCGGGTAGCGCCGCCGACCAGGGCGTACCAGCCAGTGGCCAGGGGAAAATGATTACGGTGAAAACCGATGTGCTTGATTTGACTATCAACACCCGTGGTGGTGATGTCGAGCAGGCCTTGCTCCCG STY3938 STM3842 1
20 1 1 2 2 CHIP2599 CHIP2599 ATGCAACTGAATTCCACCGAAATCAGCGAACTGATCAAGCAGCGCATTGCTCAGTTCAATGTGGTGAGCGAAGCTCACAACGAAGGTACTATTGTTTCTGTCAGTGACGGTGTTATCCGCATTCACGGCCTGGCCGATTGTATGCAGGGTGAAATGATCTCCCTGCCGGGTAACCGTTACGCTATCGCACTGAACCTGGAGCGCGACTCCGTGGGTGCGGTAGTCATGGGTCCATACGCTGACCTTGCCGAAGGC STY3911 STM3867 1

Total number of rows: 5184

Table truncated, full table size 2379 Kbytes.






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