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Platform GPL22217 Query DataSets for GPL22217
Status Public on Jul 27, 2016
Title Agilent-033942 20mGyG 4x180k CGH array [Feature Number version]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Agilent-033942 20mGyG


Arrays of this design have barcodes that begin with 16033942 or 2533942.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Jul 25, 2016
Last update date Jul 27, 2016
Contact name Keiji OGURA
E-mail(s) keogura@ies.or.jp
Phone +81-175-71-1965
Organization name Institute for Environmental Science
Department Department of Radiobiology
Street address Takahoko, Hacchasawa,
City Rokkasho-mura,Kamikita-gun,
State/province Aomori
ZIP/Postal code 039-3213
Country Japan
 
Samples (18) GSM2507180, GSM2507181, GSM2507182, GSM2507183, GSM2507184, GSM2507185 
Series (2)
GSE89425 Analysis of transgenerational effects on DNA copy number aberrations in male mice exposed to continuous 20mGy/day gamma-rays for 400 days
GSE95319 Analysis of transgenerational effects on DNA copy number aberrations in male mice exposed to continuous 20mGy/day gamma-rays for 400 days (Secondary screening for 20mGyG familly).

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBank Accession number
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location:mm9,NCBI Build37,July2007
CHROMOSOME
RANGE_START
RANGE_END
CYTOBAND Cytoband
DESCRIPTION Description
SEQUENCE Oligonucleotide probe sequence

Data table
ID COL ROW SPOT_ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION CHROMOSOME RANGE_START RANGE_END CYTOBAND DESCRIPTION SEQUENCE
35062 429 258 A_67_P10000051 FALSE chr1:3037429-3037481 chr1 3037429 3037481 mm|qA1 CAGGCACTGAAGAATTAGGGATCATTCCTGGAATTCAGAACCCATGGAAATTA
32124 438 14 A_67_P10000052 FALSE chr1:3037443-3037502 chr1 3037443 3037502 mm|qA1 TTAGGGATCATTCCTGGAATTCAGAACCCATGGAAATTACACAAAATATGTAGTCTCAAA
19992 474 137 A_67_P00000004 FALSE chr1:3037591-3037647 chr1 3037591 3037647 mm|qA1 CTAGGCTAATTTTAGTCACCAGCATCTTAAATAGGCAAGCAAGGGAAACTCAGTGAG
111316 205 70 A_67_P10000053 FALSE chr1:3037892-3037946 chr1 3037892 3037946 mm|qA1 GTCCCATCCCAAATTCATCAAAAGATTAATCCATCGGTTAGGTCAGTTCCTACAT
22131 467 280 A_67_P10000054 FALSE chr1:3037916-3037968 chr1 3037916 3037968 mm|qA1 ATTAATCCATCGGTTAGGTCAGTTCCTACATGACCCAGTTACTTCCCTAAAGC
44606 401 210 A_67_P10000055 FALSE chr1:3037970-3038022 chr1 3037970 3038022 mm|qA1 ATATCTCTGAGCACTTCACATGAAGCCAAAGTTTCAACTCCTGAATGGTTTGG
113738 198 325 A_67_P10000056 FALSE chr1:3037997-3038056 chr1 3037997 3038056 mm|qA1 AAAGTTTCAACTCCTGAATGGTTTGGAGGATATTTCATAAACAAACCATAATGCCTGCAT
28916 447 310 A_67_P00000005 FALSE chr1:3038047-3038106 chr1 3038047 3038106 mm|qA1 ATGCCTGCATATTATTTTATCACCTTTAATTTCCAGAATCTTAGTTGACACATTTAAATT
96316 249 150 A_67_P04000035 FALSE chr1:3038048-3038107 chr1 3038048 3038107 mm|qA1 TGCCTGCATATTATTTTATCACCTTTAATTTCCAGAATCTTAGTTGACACATTTAAATTG
80468 296 225 A_67_P10000057 FALSE chr1:3038191-3038250 chr1 3038191 3038250 mm|qA1 TCTGACAACAGGATATCATTCATGGATAAGGATAATCTGCTAATAACAATTAATTTAGGA
96993 247 156 A_67_P10000058 FALSE chr1:3038226-3038285 chr1 3038226 3038285 mm|qA1 TCTGCTAATAACAATTAATTTAGGATGATTATATATTTCATCACAATCTTGCCAATGTTT
168307 37 328 A_67_P04000036 FALSE chr1:3038275-3038334 chr1 3038275 3038334 mm|qA1 TGCCAATGTTTTTCCCTATTCAATTGGTTAAAGATATAGAAAGTGTATCAGCACTATGGG
104377 226 7 A_67_P04000037 FALSE chr1:3039208-3039267 chr1 3039208 3039267 mm|qA1 ATGAAAGTTTGACAGAGTAAATGTGATAAACTCCACTAAGAAATCAGTTCCTTAGTGGCA
36277 426 207 A_67_P04000038 FALSE chr1:3039418-3039477 chr1 3039418 3039477 mm|qA1 TCTAGGCAAATCAATACTTTTTGTAAGCACTCTTTAGGTATTGGAATGTATCCATAAACA
9574 504 234 A_67_P00000006 FALSE chr1:3039444-3039503 chr1 3039444 3039503 mm|qA1 GCACTCTTTAGGTATTGGAATGTATCCATAAACAAATGACAATAATAACAATGGGTTAGA
105499 222 144 A_67_P00000007 FALSE chr1:3039900-3039959 chr1 3039900 3039959 mm|qA1 CCTGCCACACTTAGGGAGTATATGTATAACAGGACCAGATTTATTCTGTGTAAAAGGAAT
82182 291 197 A_67_P10000059 FALSE chr1:3040690-3040746 chr1 3040690 3040746 mm|qA1 TTCAACCAGGATCTGTTTATTTATCTCCTTGAGATTGGTGTAGACAGTGAAGCAAGG
161340 58 321 A_67_P04000040 FALSE chr1:3041102-3041161 chr1 3041102 3041161 mm|qA1 TCCAGTTCTATTATGTGTCTCGAATAGACAATACCAAGAAAAGAATACTACTTGCGTTCA
75369 311 223 A_67_P00000008 FALSE chr1:3041155-3041214 chr1 3041155 3041214 mm|qA1 GCGTTCATTTATTTTAAAAATTGTTATATGAATACCAACATATCTAATTCTATGCCTTCG
63554 346 53 A_67_P04000041 FALSE chr1:3041310-3041369 chr1 3041310 3041369 mm|qA1 ATTGATCAATTTGACCAACTGTTGATTAGAGGAAAGAATCAGAAATAGTCTGAGGCTGTG

Total number of rows: 58203

Table truncated, full table size 12781 Kbytes.




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