GEO help: Mouse over screen elements for information.
Status
Public on May 11, 2016
Title
065939 Arraystar Mouse RefSeq Promoter Array
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Mus musculus
Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
Agilent-065939 MM9 Arraystar Mouse 4x180 K RefSeq Promoter Microarrays are specifically designed for the unbias identification of epigenetic modifications and transcription factor binding sites within 22,327 mRNA promoter regions by using 60-mer tiling probes at approximately 205 bp spacing. The probes for positive, negative are also included to facilitate experimental performance assessment. 22327 RefSeq gene promoters (from -1300 to +500 bp)
Submission date
May 10, 2016
Last update date
May 11, 2016
Contact name
Panos Pan
E-mail(s)
panosp@arraystar.com
Phone
888-416-6343
Organization name
Arraystar Inc.
Street address
9430 Key West Avenue
City
Rockville
State/province
MD
ZIP/Postal code
20850
Country
USA
Samples (56)
GSM2174912 , GSM2174913 , GSM2174914 , GSM2174915 , GSM2181574 , GSM2181575
GSM2181576 ,
GSM2181577 ,
GSM2181578 ,
GSM2181579 ,
GSM2181580 ,
GSM2181581 ,
GSM2181582 ,
GSM2181583 ,
GSM2181584 ,
GSM2181585 ,
GSM2319638 ,
GSM2319639 ,
GSM2319640 ,
GSM2319641 ,
GSM2319642 ,
GSM2319643 ,
GSM4057562 ,
GSM4057563 ,
GSM4057564 ,
GSM4057565 ,
GSM4057566 ,
GSM4057567 ,
GSM4058597 ,
GSM4058598 ,
GSM4058599 ,
GSM4058600 ,
GSM4058601 ,
GSM4058602 ,
GSM4284752 ,
GSM4284753 ,
GSM5261982 ,
GSM5261983 ,
GSM5261984 ,
GSM5261985 ,
GSM5261986 ,
GSM5261987 ,
GSM5765334 ,
GSM5765335 ,
GSM6755998 ,
GSM6755999 ,
GSM6756000 ,
GSM6756001 ,
GSM6756002 ,
GSM6756003 ,
GSM6756004 ,
GSM6756005 ,
GSM6756006 ,
GSM6756007 ,
GSM6756008 ,
GSM6756009
Series (11)
GSE81739
Methylation profiling of 3T3-L1 Cells: Control vs slincRAD-shRNA8 stable transfected
GSE82029
DNA methylation alternations in the offspring liver from chromium restriction diet dams
GSE82030
DNA methylation alternations in the offspring adipose from chromium restriction diet dams
GSE87044
Sox9 transcriptionally regulates Wnt signaling in intestinal epithelium stem cells under hypomethylated crypts in diabetic state
GSE136766
DNA methylation alternations in the offspring liver from inulin early intervention dams
GSE136814
DNA methylation alternations in the offspring liver from high fat diet dams
GSE144272
DNA methylation analysis of mouse embryonic fibroblasts (MEFs) and Thymidine treatment-induced MEFs (induced cells).
GSE173218
DNA methylation alternations in the offspring brown adipose tissue from high fat diet dams
GSE192781
DNA methylation profiling in lungs of Th17-mediated neutrophil-predominant asthma mice vs control mice
GSE218747
DNA methylation alternations in the offspring pancreatic tissue from hyperglycemic dams
GSE218748
DNA methylation alternations in the offspring hypothalamic tissue from inulin treatment dams
Data table header descriptions
ID
probeID
CONTROL_TYPE
BUILD
genome build
Chromosome
RANGE_GB
RANGE_START
RANGE_END
SEQUENCE
SPOT_ID
Data table
ID
CONTROL_TYPE
BUILD
Chromosome
RANGE_GB
RANGE_START
RANGE_END
SEQUENCE
SPOT_ID
MmCGHBrightCorner
pos
control
DarkCorner2
pos
control
Ch_220697_0000355
FALSE
MM9
chr10
NC_000076.5
11001167
11001211
GCGGAGGCGCAGAGGATTGGGACGGGACGGGCCCCGTGCGTGGTC
Ch_220697_0147674
FALSE
MM9
chr7
NC_000073.5
142387878
142387922
CCCAGGTCTGAGGATTTGTAAAACAGCTCTGAATGCAGAGTCACG
Ch_220697_0151242
FALSE
MM9
chr8
NC_000074.5
34594157
34594205
ACTGGATGGCTGTTTCTGCGCATCACTGACTCACGGTAAAGAAAAATAA
Ch_220697_0141215
FALSE
MM9
chr7
NC_000073.5
75422368
75422412
AGGTAAGGTGACTTGCCAGCCTCTACTTAGCTTCACCGCTGAAAA
Ch_220697_0090609
FALSE
MM9
chr2
NC_000068.6
135882870
135882928
TCTAAAGTCATGGAGAGATTCAAACTGACAACATAGGTAAAATGCTTTGCAGTTTGTCC
Ch_220697_0079588
FALSE
MM9
chr1
NC_000067.5
192848828
192848875
CACTTATACGTGACCAGTAGGTGCCAAGCTGGGCTGACTACTAATACT
Ch_220697_0138955
FALSE
MM9
chr7
NC_000073.5
38968046
38968090
CTAGACTGGAGTTCGCTCGCCACACTCTCTATTTGGGTGGCATTG
Ch_220697_0020158
FALSE
MM9
chr11
NC_000077.5
116705023
116705067
TTTCGGTTCCGGGAGGAGCCAGTTCCCGGAGGCAATCGGGCGGTG
Ch_220697_0146073
FALSE
MM9
chr7
NC_000073.5
127245578
127245622
AACTTTCACTCCAAGCCACTGCTGTAGGAAGAGACTGTCTCCAAG
Ch_220697_0103505
FALSE
MM9
chr3
NC_000069.5
154259196
154259246
AAACATGGCTTGGAGAAGAGACAACAGTGTTTTGGAGACTCGTCTGAATAA
Ch_220697_0150208
FALSE
MM9
chr8
NC_000074.5
19193119
19193178
GTCTATAGGTCCTAAGTATTCCTAAATCTATAGATCTGAATCTACTTTTCAGCACGAGCC
Ch_220697_0083963
FALSE
MM9
chr2
NC_000068.6
61416924
61416983
TCTGACCCTTTTACTCTGTCCCTAATTTTTAAGACAGAATGGTTTATGTCTTTAATTGAG
Ch_220697_0068292
FALSE
MM9
chr19
NC_000085.5
37450744
37450788
CGCCATCCATTTCTTCGGGTCACGCCCCGTCGTCACCACAGTGAC
Ch_220697_0087474
FALSE
MM9
chr2
NC_000068.6
93997895
93997939
CAAGGCCTCGTTGCCCACGCACCACACCTGGAAGGCCCTGAAGAG
Ch_220697_0006277
FALSE
MM9
chr10
NC_000076.5
110942846
110942895
TGGCTATTTTGCCTGTGTTCTGTGGCAGGAAAGGAAGTCAAGAATGTATA
Ch_220697_0046322
FALSE
MM9
chr16
NC_000082.5
4002749
4002808
CTAATTGCTTTTCAAATCTTTAGCCCATTTAATCCTTACAGCAATACTATATAATACAAT
Ch_220697_0015225
FALSE
MM9
chr11
NC_000077.5
82685213
82685258
TTTTGGCAGGCACTTAACCTTTCCAATATCTTCCCCATCCCAGAAA
Ch_220697_0082327
FALSE
MM9
chr2
NC_000068.6
31006663
31006718
ATAGATACCTGAGTTAACTTTCTAGTACTCATGATGTCAGGCAACACACAACTGCC
Total number of rows: 176015 Table truncated, full table size 19675 Kbytes .
Supplementary data files not provided