GEO Accession viewer

GSE79283	Tdrd6a recruits Ziwi-bound piRNAs and coordinates deposition of germ plasm mRNAs into primordial germ cells [scRNA-Seq]
GSE79285	Tdrd6a recruits Ziwi-bound piRNAs and coordinates deposition of germ plasm mRNAs into primordial germ cells
GSE80134	Tet-mediated DNA hydroxymethylation regulates retinal neurogenesis in zebrafish via cell-extrinsic signaling pathways
GSE81533	Massively parallel whole-organism lineage tracing using CRISPR/Cas9 induced genetic scars
GSE81713	Whole organism lineage tracing by combinatorial and cumulative genome editing
GSE83195	Short Bowel Syndrome (SBS) has Widespread Effects Beyond Altering Nutrient Absorption: RNA Sequencing a Zebrafish SBS Model
GSE84602	Cohesin facilitates zygotic genome activation in Zebrafish
GSE85755	Single-cell sequencing reveals dissociation-induced gene expression in tissue subpopulations
GSE85943	Selenoprotein H is an essential regulator of redox homeostasis that cooperates with p53 in development and tumorigenesis
GSE89670	The Biotagging toolkit for analysis of specific cell populations in zebrafish reveals gene regulatory logic encoded in the nuclear transcriptome
GSE92260	Development of zebrafish medulloblastoma model by TALENs induced somatic gene inactivation methods
GSE92544	Estrogen sensing by GPER1 activates PI3K/mTOR to promote gender dimorphism in liver growth and cancer
GSE92740	Transcriptomic analysis reveals inflammasome-dependent mechanism for early neutrophil response to Mycobacterium Marinum
GSE94492	Atrial Molecular Asymmetry Precedes the Emergence of Cardiac Septation
GSE94617	Comparative transcriptome profiling of zebrafish and medaka hearts following cardiac cryoinjury
GSE95812	Functional Analysis of Regional Gene Expression in Zebrafish Craniofacial Development
GSE96534	Generation of a binary transgenic zebrafish model to study myeloid gene regulation in response to pre-neoplastic melanocytes
GSE96928	H3K27me3 deposition over sarcomeric and cytoskeletal promoters is required for cardiomyocyte cytokinesis and wound invasion during zebrafish heart regeneration [ChIP-seq]
GSE96930	H3K27me3-mediated silencing of structural genes is required for zebrafish heart regeneration
GSE97421	A Novel Perivascular Cell Population in the Zebrafish Brain
GSE97649	mafba is a downstream transcriptional effector of Vegfc signaling essential for embryonic lymphangiogenesis in zebrafish.
GSE97650	Mural lymphatic endothelial cells regulate meningeal angiogenesis in the zebrafish
GSE97651	Mural lymphatic endothelial cells regulate meningeal angiogenesis in the zebrafish (pericytes)
GSE99566	c-MYC drives neuroblastoma tumorigenesis and retinoic acid resistance in zebrafish [ATAC-Seq]
GSE99572	c-MYC drives neuroblastoma tumorigenesis and retinoic acid resistance in zebrafish
GSE100029	Macrophages directly contribute collagen to scar formation during zebrafish heart regeneration and mouse heart repair
GSE100286	Atac-seq of 2.5 hpf zebrafish embryos
GSE100892	Exercise in adult zebrafish promotes ventricular cardiomyocyte proliferation in the regenerating heart
GSE100910	Dissecting hematopoietic and renal cell heterogeneity in adult zebrafish at single cell resolution using RNA sequencing [inDrops]
GSE100911	Dissecting hematopoietic and renal cell heterogeneity in adult zebrafish at single cell resolution using RNA sequencing [Smart-seq]
GSE100913	Dissecting hematopoietic and renal cell heterogeneity in adult zebrafish at single cell resolution using RNA sequencing
GSE101297	c-MYC drives a subset of high-risk pediatric neuroblastomas and is activated through mechanisms including enhancer hijacking and focal enhancer amplification
GSE101719	Nr2f transcription factors promote the identity of the vertebrate upper jaw
GSE102032	Deficiency in class III PI3-kinase induces intestinal epithelial damage and inflammatory bowel disease like phenotype in zebrafish
GSE102606	Regulation of posterior body and ectodermal morphogenesis in zebrafish by localized Yap1 and Wwtr1
GSE102990	Whole-organism clone-tracing using single-cell sequencing
GSE103169	Multiple roles for Wwtr1 in cardiac wall maturation
GSE104057	Spatially resolved RNA-sequencing of the embryonic zebrafish heart
GSE104573	Atrial Molecular Asymmetry Precedes the Emergence of Cardiac Septation [RNA-seq]
GSE104639	Low incubation temperature during early development negatively affects survival and related innate immune processes in zebrafish larvae exposed to lipopolysaccharide
GSE104692	Parental high dietary arachidonic acid levels modulated the hepatic transcriptome of adult zebrafish (Danio rerio) progeny
GSE104855	The vertebrate protein Dead end maintains primordial germ cell fate by inhibiting somatic differentiation
GSE105010	Simultaneous single-cell profiling of lineages and cell types in the vertebrate brain
GSE105013	Systemic gain and loss of chromatin architecture throughout zebrafish development [Hi-C]
GSE105015	Systemic Loss and Gain of Chromatin Architecture throughout Zebrafish Development.
GSE105115	Comprehensive identification and spatial mapping of habenular neuronal types using single cell RNAseq
GSE106121	Simultaneous lineage tracing and cell type identification using CRISPR/Cas9 induced genetic scars
GSE106474	Drop-seq analysis of wild-type (TLAB) zebrafish embryos from high to 6-somite stage (12 timepoints)
GSE106587	Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis
GSE106676	From pioneer to repressor: Bimodal foxd3 activity dynamically remodels neural crest regulatory landscape in vivo
GSE107003	Age-dependent increase of oxidative stress regulates microRNA-29 family preserving cardiac health
GSE107518	c-MYC drives a subset of high-risk pediatric neuroblastomas and is activated through mechanisms including enhancer hijacking and focal enhancer amplification [RNA-seq]
GSE109158	10X genomics analysis of adult and larval habenula from the gng8-GFP transgenic line
GSE109159	Smart-seq2 analysis of larval zebrafish habenula from the gng8-GFP transgenic line
GSE109881	Single-cell RNA sequencing of zebrafish beta-cells from various stages
GSE111152	Maternal mRNA degradation by TUT4 and TUT7 in the zebrafish maternal-to-zygotic transition
GSE111765	RNA seq analysis on zebrafish Notch 3 mutants and adult neural stem cells
GSE111963	Transcriptome profiling of endothelial cells from wild-type, hhex mutants and hhex-overexpression zebrafish embryos
GSE112294	Systematic mapping of cell state trajectories, cell lineage, and perturbations in the zebrafish embryo using single cell transcriptomics
GSE112438	Cell type purification by single-cell transcriptome-trained sorting
GSE112824	10x analysis of wild-type (TLAB) and MZoep zebrafish embryos at 6-somite stage
GSE113086	Developmental regulation of heterochromatin establishment at the maternal to zygotic transition
GSE113272	Loss of the Mia40a oxidoreductase leads to hepato-pancreatic insufficiency in the zebrafish
GSE113471	Krox20 hindbrain regulation in Zebrafish [ATAC-seq]
GSE114038	The Polycomb Group protein Rnf2/Ring1b is essential for zebrafish development and cardiogenesis
GSE114416	Gene expression analysis of jam3b mutant embryos
GSE115140	Single-cell analysis of tumor progression reveals the function, structure, and evolution of cancer archetypes
GSE115427	Phenotypic landscape of schizophrenia-associated genes defines candidates and their shared functions
GSE118076	(Epi)genetic regulation of zebrafish intestinal development
GSE118955	RNAseq of zebrafish (Danio rerio) developmentally exposed to the polychlorinated biphenyl 3,3'-dichlorobiphenyl (PCB-11)
GSE119070	Loss of maternal and zygotic ezh2 reveals the function of Polycomb repression in maintenance of gene expression domain after the body plan is established in zebrafish
GSE119718	Morphogenesis and differentiation of embryonic vascular smooth muscle cells in zebrafish
GSE120236	Transcriptomic profile of zebrafish cardiomyocytes throughout heart development
GSE120237	Genome-wide chromatin accessibility profile of zebrafish cardiomyocytes throughout heart development
GSE120238	Transcriptome profile and Genome-wide chromatin accessibility profile of zebrafish cardiomyocytes throughout heart development
GSE121041	Wnt/β-catenin signaling regulates VE-cadherin-mediated anastomosis of brain capillaries by counteracting S1pr1 signaling
GSE121114	Neuromesodermal Progenitors are a Conserved Source of Spinal Cord with Divergent Growth Dynamics
GSE121163	Embryonic incubation temperature has a long-term effect on the immune response of adult zebrafish
GSE121164	Embryonic incubation temperature has a long-term effect on the microRNA transcriptome of adult zebrafish
GSE121165	Embryonic incubation temperature effect adult zebrafish
GSE121750	Functional heterogeneity within the developing zebrafish epicardium
GSE121917	Purification of high-quality RNA from a small number of fluorescence activated cell sorted zebrafish cells for RNA sequencing purposes
GSE123036	Modelling pancreatic beta-cell inflammation in zebrafish identifies a natural product for human beta-cell protection
GSE123056	Pioneer and repressive functions of p63 during embryonic ectoderm specification [ATAC-seq]
GSE123059	Pioneer and repressive functions of p63 during embryonic ectoderm specification
GSE125040	Zebrafish Samples for Loss of ATRX cooperates with p53-Deficiency to promote the Development of Sarcomas and other Malignancies
GSE125859	Transpositional scaling and niche transitions restore organ size and shape during zebrafish fin regeneration
GSE126096	A familial Alzheimer’s disease-like mutation in the zebrafish presenilin 1 gene affects brain energy production
GSE126418	Effect of PTBA on acute kidney injury during AKI
GSE126700	Regenerating zebrafish fin epigenome is characterized by stable lineage-specific DNA methylation and dynamic chromatin accessibility (ATAC-seq)
GSE126701	Regenerating zebrafish fin epigenome is characterized by stable lineage-specific DNA methylation and dynamic chromatin accessibility (RNA-seq)
GSE126702	Regenerating zebrafish fin epigenome is characterized by stable lineage-specific DNA methylation and dynamic chromatin accessibility (WGBS)
GSE126703	Regenerating zebrafish fin epigenome is characterized by stable lineage-specific DNA methylation and dynamic chromatin accessibility
GSE128350	Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta
GSE128511	Loss of Pitx2c predisposes to arrhythmia and atrial fibrillation pathologies via structural and metabolic dysfunction
GSE129952	RNA-seq of erythroid cells from 24 hours post fertilization sf3b1 mutant and sibling zebrafish
GSE130037	MITF-low zebrafish melanomas reveal cells with no MITF activity at the site of residual disease
GSE130196	Genome-wide strategies reveal downstream target genes of Npas4l associated with cardiovascular development in zebrafish [ATAC-Seq]
GSE130198	Genome-wide strategies reveal downstream target genes of Npas4l associated with vascular development in zebrafish [ChIP-Seq]
GSE130199	Genome-wide strategies reveal downstream target genes of Npas4l associated with cardiovascular development in zebrafish [RNA-Seq 1]
GSE130200	Genome-wide strategies reveal downstream target genes of Npas4l associated with cardiovascular development in zebrafish [RNA-Seq 2]
GSE130202	Genome-wide strategies reveal downstream target genes of Npas4l associated with cardiovascular development in zebrafish
GSE130526	Fate plasticity and reprogramming in genetically distinct populations of Danio leucophores
GSE130940	AP-1 Regulates Chromatin Accessibility to Promote Sarcomere Disassembly and Cardiomyocyte Protrusion during Zebrafish Heart Regeneration
GSE131136	Thyroid hormone regulates distinct paths to maturation in pigment cell lineages
GSE132258	ATACseq of haemogenic and aortic endothelium in zebrafish embryos 28-20 hours post fertilization
GSE132260	ATACseq and RNAseq of haemogenic and aortic endothelium in zebrafish embryos 28-20 hours post fertilization
GSE132864	Gene expression patterns from hcfc1a Co60 brain homogenates.
GSE132927	Gene expression analysis of hematopoietic stem/progenitor cells in the zebrafish kidney
GSE133466	Single-cell RNA sequencing of zebrafish thyroid cells
GSE134330	Gene expression analysis in the zebrafish fractured scale
GSE134705	Cross-species analysis across 450 million years of evolution reveals conservation and divergence of the microglia program (scRNA-seq)
GSE134706	Cross-species analysis across 450 million years of evolution reveals conservation and divergence of the microglia program (bulk RNA-seq)
GSE134707	Cross-species analysis across 450 million years of evolution reveals conservation and divergence of the microglia program
GSE134951	gabrg2-KO whole zebrafish larval brain differential expression analysis
GSE135100	Identification of BMP-regulated genes in early gastrulation stage zebrafish embryos
GSE135190	Transcriptomic response to Keap1-specific electrophile modification in zebrafish embryos
GSE135406	Comparative transcriptomic and epigenomic analysis identifies key regulators of injury response and neurogenic competence in retinal glia
GSE135682	Aberrant AKT Activation Drives Ganglioneuroma and Can Be Therapeutically Targeted by mTOR Inhibitors
GSE135884	CRISPR-Cas13d induces efficient mRNA knock-down in animal embryos
GSE136669	Pervasive changes of mRNA splicing in upf1 deficient zebrafish identify rpl10a as a regulator of T cell development
GSE136786	Transcriptomics of zebrafish cardiac valve regeneration
GSE137304	Transient epigenetic reprogramming during adult zebrafish muscle regeneration
GSE137525	Single cell sequencing of radial glia progeny reveals diversity of newborn neurons in the adult zebrafish brain
GSE137987	Chronic glucocorticoid exposure in early development leads to neuroendocrine, metabolic, and immune dysregulation in adult zebrafish
GSE138251	Biliary-Atresia-associated Mannosidase-1-alpha-2 gene regulates biliary and ciliary morphogenesis and laterality (zebrafish)
GSE139218	Single-cell analysis uncovers that metabolic reprogramming is essential for cardiomyocyte proliferation in the regenerating heart.
GSE139623	Chd7-KO transcriptomic analysis
GSE140544	Dual RNA-seq of zebrafish larvae infected with Shigella sonnei
GSE141144	Transcriptional analysis of the effects of early life exposure to fluoxetine on telencephalon and hypothalamus in SR4G transgenic zebrafish larvae and adults
GSE142311	RNA Sequencing - Zebrafish FASD Model
GSE142673	Transcriptional profiles of wild-type and pheta1/2 mutant zebrafish larvae
GSE143208	Genome wide localization of RNAs during early zebrafish development
GSE143763	ATACseq of kdrl-GFP+ endothelial cells in 28hpf zebrafish embryos
GSE143770	Identification of TGF-b targets in the cardiac outflow tract by transcriptomic analysis
GSE143801	Zebrafish chemical compound screen uncovers inducers of skeletal muscle engraftment across species
GSE144063	Identification of mecciRNAs and their roles in the mitochondrial entry of proteins
GSE144754	Skeletal and limb anomalies as a result of mutation in hnrnpul1 in zebrafish
GSE144884	RNAseq measurement of cortisol induced gene expression change under knockout of glucocorticoid receptor (nr3c1)
GSE144885	RNAseq measurement of cortisol induced gene expression change under knockout of Klf9
GSE145270	mbnl mutant zebrafish RNA-Seq experiments
GSE145563	Genome-wide chromatin accessibility profiles of zebrafish liver cells in thioacetamide (TAA) model
GSE145564	Transcriptomic profile of zebrafish liver cells in thioacetamide (TAA) model
GSE145565	Genome-wide chromatin accessibility and transcriptome profiles of zebrafish liver cells in thioacetamide (TAA) model
GSE145801	EPI-00649-2019 New insights into the early mechanisms of epileptogenesis in a zebrafish model of Dravet syndrome
GSE145980	Single-cell analysis of non-myocytes during heart regeneration reveals sequential coordinated responses from distinct cell populations [scRNA-seq]
GSE145982	Single-cell analysis of non-myocytes during heart regeneration reveals sequential coordinated responses from distinct cell populations.
GSE146852	Targeted RNA Knockdown by a Type III CRISPR-Cas Complex in Zebrafish
GSE148391	Early zebrafish development time course transcriptome
GSE148468	Transcriptomic analysis of premature termination codon mutation in the zebrafish gene psen2
GSE148631	Transcriptome analyses of 7-day-old zebrafish larvae possessing a familial Alzheimer’s disease-like mutation in psen1 indicate effects on oxidative phosphorylation, mcm functions, and iron homeostasis.
GSE148957	Identification of target genes in tie1 mutant zebrafish heart by transcriptomic analysis
GSE149149	Iron Responsive Element (IRE)-mediated responses to iron dyshomeostasis in Alzheimer’s disease
GSE150009	Transcriptome analysis of zebrafish, medaka and zebraka chimeras
GSE150373	Resistance to inflammation underlies enhanced fitness in clonal hematopoiesis [I]
GSE150498	Myeloid-stromal subtypes reveal NOD2-mediated Crohn's and rescue pathways
GSE151354	Single cell analysis of juvenile Nkx3.2 mutant zebrafish craniofacial skeleton
GSE151398	Transcriptome comparison of wild-type and tnnt2a MO zebrafish hearts
GSE151679	Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma
GSE151816	A novel TLX1 driven T-ALL zebrafish model: comparative genomic analysis with other leukemia models
GSE151873	RNA sequencing of myoseptal and perivascular cells during spinal cord regeneration in larval zebrafish.
GSE151999	Brain transcriptome analysis reveals subtle effects on mitochondrial function and iron homeostasis of mutations in the SORL1 gene implicated in early onset familial Alzheimer’s disease
GSE152389	Latent TGF β binding proteins 1 and 3 protect the larval zebrafish outflow tract from aneurysmal dilatation
GSE152423	Multi-modal characterization of chromatin architecture from 24 hpf whole zebrafish embryos
GSE152695	Transcriptional profiling of pancreatic somatostatin and beta-cells from zebrafish [scRNA-seq]
GSE152696	Transcriptional profiling of pancreatic somatostatin and beta-cells from zebrafish [bulk RNA-seq]
GSE152697	Transcriptional profiling of pancreatic somatostatin and beta-cells from zebrafish
GSE152859	Emx2 defines bidirectional polarity of neuromasts by changing hair-bundle orientation and not hair-cell positions
GSE152902	Optimized design of antisense oligomers for targeted rRNA depletion
GSE152906	An atlas of neural crest lineages along the posterior developing zebrafish at single-cell resolution
GSE152998	Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [RNA-Seq]
GSE153170	Prrx1b restricts fibrosis and promotes Nrg1-dependent cardiomyocyte proliferation during zebrafish heart regeneration
GSE153197	Transcriptional profiling of pax2a-Low and pax2a-High thyroid follicular cells in zebrafish
GSE153436	PCB126 (3,3',4,4',5-Pentachlorobiphenyl) induced alterations in m6A RNA modifications in zebrafish embryos
GSE153621	Variability of an early developmental cell population underlies stochastic laterality defects
GSE155294	THE IMMUNE RESPONSE MODULATES ZEBRAFISH RETINAL PIGMENT EPITHELIUM REGENERATION [RPE]
GSE155295	THE IMMUNE RESPONSE MODULATES ZEBRAFISH RETINAL PIGMENT EPITHELIUM REGENERATION [macrophages]
GSE156158	Whole-transcriptome RNA-seq analysis of zebrafish microglia subpopulations
GSE156419	Determining the effects of hepatic As3mt overexpression on the response to arsenic in the liver of zebrafish larvae
GSE156420	Gene expression analysis of 120 hpf zebrafish livers following 24 hour iAs exposure
GSE157662	Cardiomyocyte heterogeneity in zebrafish development and regeneration
GSE158142	Emergence of neuronal diversity during vertebrate brain development
GSE158233	Transcriptome analysis of N140fs and T141_L142delinsMISLISV mutations in the zebrafish orthologue of the Alzheimer's disease gene PSEN2
GSE158849	Spatio-temporal mRNA tracking in the early zebrafish embryo
GSE158919	Morphine alleviates pain after heart cryonjury in zebrafish without impeding regeneration
GSE159032	Cellular drivers of injury response and regeneration in the adult zebrafish heart
GSE159709	Spatially resolved transcriptomics reveals the architecture of the tumor-microenvironment interface
GSE160107	Genomic and physiological analyses of the zebrafish atrioventricular canal reveal molecular building blocks of the secondary pacemaker region
GSE160355	Profiling of mRNA localization of nuclear-encoded mitochondrial proteins in zebrafish.
GSE160398	Transcriptome profile of the zebrafish sinoatrial ring
GSE161642	Reactive oligodendrocyte progenitor cells (re-)myelinate the regenerating zebrafish spinal cord [Single cell]
GSE161647	Role of Il-11 signaling in adult heart and fin regeneration in zebrafish
GSE161686	Reactive oligodendrocyte progenitor cells (re-)myelinate the regenerating zebrafish spinal cord [transcriptome]
GSE161687	Reactive oligodendrocyte progenitor cells (re-)myelinate the regenerating zebrafish spinal cord
GSE161712	A Non-Canonical Type 2 Immune Response Coordinates Tuberculous Granuloma Formation and Epithelialization
GSE162207	Competition for H2A.Z underlies the developmental impacts of repetitive element de-repression
GSE162604	Identification of Snai1b targets in zebrafish heart by transcriptomic analysis
GSE162979	Skeletal muscle injury-responsive macrophage subsets in larval zebrafish
GSE164491	Next Generation Sequencing Facilitates Quantitative Analysis of Wild Type and Ccn2a-/- cardiac ventricular Transcriptomes
GSE164729	Interspecies comparison reveals Hmga1 as a key determinator of cardiac regenerative potential
GSE166396	Endothelial progenitor migration and differentiation is regulated by distinct transcriptional effectors of Cloche/Npas4l
GSE166900	Phosphatidylinositol-3 kinase signaling controls survival and stemness of hematopoietic stem and progenitor cells
GSE166917	RNA_Seq analysis of localization along animal-vegetal axis of Danio rerio
GSE167414	RNA-sequencing of rbpms2a; rbpms2b double-mutant and control-sibling zebrafish embryos at 33 hours post fertilization.
GSE167787	Inflammation potentiates JMML-like blood defects in Shp2 mutant Noonan syndrome
GSE168175	Identification of targets of Vegfc signaling during cardiac regeneration in zebrafish
GSE168695	Adaptive cell invasion maintains organ homeostasis
GSE168960	Identification of downstream effectors of retinoic acid specifying the zebrafish pancreas by integrative genomics [ATAC-seq]
GSE168962	Identification of downstream effectors of retinoic acid specifying the zebrafish pancreas by integrative genomics [ChIP-seq]
GSE168966	Identification of downstream effectors of retinoic acid specifying the zebrafish pancreas by integrative genomics [RNA-seq]
GSE168969	Identification of downstream effectors of retinoic acid specifying the zebrafish pancreas by integrative genomics
GSE169522	Induced torpor as a countermeasure for low dose radiation exposure in a zebrafish model
GSE171426	Retinal ganglion cell survival after severe optic nerve injury is modulated by crosstalk between JAK/STAT signaling and innate immune responses in the zebrafish retina
GSE172111	7 dpf RNA Sequencing - Zebrafish FASD Model
GSE172292	Shp1 protein tyrosine phosphatase function in the early development of the hematopoietic system of zebrafish
GSE173100	Loss of kdrl marks the shift from embryonic to adult HSPCs
GSE173179	mRNA sequence analysis of zebrafish embryos injected with the codon tag reporter library
GSE173480	foxl2l regulates female meiotic entry during juvenile gonadal development in zebrafish
GSE173718	Single cell transcriptomes of zebrafish germline reveal progenitor types and feminization by Foxl2l [scRNA-seq]
GSE174505	Identification of Tcf21 downstream genes in the epicardial cells and cardiomyocytes by transcriptomic analysis
GSE174529	New insights into benzo[⍺]pyrene osteotoxicity in zebrafish
GSE174538	mTOR activity is essential for retinal pigment epithelium regeneration in zebrafish
GSE176037	Resistance to inflammation underlies enhanced fitness in clonal hematopoiesis
GSE178343	Identification of chromatin states during zebrafish gastrulation using CUT&RUN and CUT&Tag
GSE178751	Distinct epicardial gene regulatory programmes drive development and regeneration of the zebrafish heart
GSE179401	Single cell imaging of T cell immunotherapy responses in vivo
GSE181287	Epigenetic dynamics shaping melanophore and iridophore cell fate in zebrafish
GSE181987	Single-cell transcriptomic profiling of healthy and fibrotic adult zebrafish liver reveals conserved cell identities and pathways with human liver
GSE182714	Adar-mediated A-to-I editing is required for establishment of embryonic body axes in zebrafish
GSE184035	Single-cell profiling of histone modifications and transcription in developmental systems with EpiDamID [zebrafish]
GSE184036	Single-cell profiling of histone modifications and transcription in developmental systems with EpiDamID
GSE184565	Long-Term Consumption Of Poultry Egg Products Provided Stable Growth Demographics, Body Composition, Glucose Control, And Liver Gene Expression In The Zebrafish Danio rerio
GSE185915	mRNA sequence analysis of zebrafish embryos injected with the codon tag reporter library [AnsB]
GSE186298	Gene expression analysis of hematopoietic niche cells in the zebrafish kidney
GSE188340	Atlas of lymphangiogenesis [scATAC-Seq]
GSE188341	Atlas of lymphangiogenesis [scRNA-Seq]
GSE188342	Atlas of lymphangiogenesis
GSE190009	Identifying key events from Per- and Polyfluoroalkyl Substances exposure that influence larval zebrafish in light:dark assay using RNA-sequencing analysis of perfluorohexane-1-sulfonate (PFHxS)
GSE190115	Dissection of melanocyte stem cell transcriptomes during melanocyte regeneration in adult zebrafish
GSE190490	Identifying key events from Per- and Polyfluoroalkyl Substances exposure that influence larval zebrafish in light:dark assay using RNA-sequencing analysis of perfluorooctane sulfonic acid (PFOS)
GSE190802	MITF deficiency accelerates GNAQ-driven uveal melanoma
GSE193433	Stress resilience is established during development and is regulated by complement factors
GSE193784	Analysis of gene expression in zebrafish cornea during wound healing
GSE194158	RNA-seq dataset of different neuronal cell types and progenitors in the developing zebrafish retina at 42 hours post fertilization
GSE195711	YAP regulates an SGK1/mTORC1/SREBP-dependent lipogenic program to support proliferation and tissue growth
GSE196551	Quality assurance of hematopoietic stem cells by macrophages determines stem cell clonality [macrophages]
GSE196552	Quality assurance of hematopoietic stem cells by macrophages determines stem cell clonality [HSCP]
GSE196553	Quality assurance of hematopoietic stem cells by macrophages determines stem cell clonality
GSE196899	Zebrafish establish female germ cell identity by advancing cell proliferation and meiosis
GSE197161	Generation of specialized blood vessels via lymphatic transdifferentiation
GSE198044	Single cell transcriptomic profiling of gill cells of zebrafish (Danio rerio) exposed to normoxia and hypoxia
GSE198220	Profiling the cancer-prone microenvironment in a zebrafish model for MPNST
GSE198231	Next Generation Sequencing Quantitative Analysis of Wild Type and Shoc2 -/- sox10-positive cells in zebrafish
GSE198711	CAPN3 depletion causes continuously activated innate immune response in zebrafish
GSE198791	Single Cell Sequencing of MITF-GFP sorted cells at 28
GSE200212	Induced Torpor: An Experimental Model to Investigate the Effects of Chronic Low-Dose Radiation Exposure on Zebrafish Liver
GSE200503	Single cell analysis of zebrafish marrow in WT and gata2a mutant animals
GSE201273	Gene expression profile showing novel insight for fasting–refeeding response in zebrafish muscle.
GSE201611	Endocardial identity is established during early somitogenesis by Bmp signalling acting upstream of npas4l and etv2
GSE202880	Labelling transcriptional response to dissociation using SLAMseq
GSE202949	Measuring stress response upon tissue dissociation using SLAMseq in bulk and single cells
GSE205752	Bulk RNA-seq analysis of gene expression changes at 8 hpf induced by miR-34a loss
GSE205754	Bulk RNA-seq analysis of gene expression changes at 72 hpf induced by miR-34a loss
GSE205755	p53 regulates the conserved zebrafish microRNA-34 gene family, of which miR-34a has direct and p53-mediated effects including tumour suppression
GSE206039	VGLL2-NCOA2 leverages developmental programs for pediatric sarcomagenesis
GSE207593	Effect of depletion of the gne gene in Zebrafish
GSE208408	Effect of TMEM43 overexpression on gene expression in adult zebrafish hearts
GSE211396	Single-cell transcriptome profiling reveals diverse immune cell populations and their responses to viral infection in the spleen of zebrafish
GSE212124	Effect of beta cell ablation on pancreatic ductal cells in adult zebrafish
GSE212314	A single-cell transcriptome atlas of the zebrafish telencephalon
GSE213359	A chronic signaling TGFb zebrafish reporter identifies immune response in melanoma [SORT-seq]
GSE213360	A chronic signaling TGFb zebrafish reporter identifies immune response in melanoma
GSE213858	Transcriptional profiles of wild-type and dscaml1 mutant zebrafish larvae
GSE213859	Excess glucose or fat differentially affects gene expression and appetite regulation during zebrafish embryogenesis
GSE215986	Single-cell chromatin landscape of non-myocytes reveals AP-1 as a key transcriptional regulator contributing to highly cooperative networks among non-myocyte subtypes during zebrafish heart regeneration [scATAC-seq]
GSE215988	Single-cell chromatin landscape of non-myocytes reveals AP-1 as a key transcriptional regulator contributing to highly cooperative networks among non-myocyte subtypes during zebrafish heart regeneration
GSE216359	Insulin-like growth factor receptor / mTOR signaling elevates global translation to accelerate zebrafish fin regenerative outgrowth
GSE217064	Transcriptomic analysis of emergency granulopoiesis-generated neutrophils compared to steady state (control) neutrophils
GSE217120	Vitamin D Receptor regulation of hepatic energy metabolism in zebrafish
GSE217839	Biliary epithelial cells are facultative liver stem cells during liver regeneration in adult zebrafish
GSE218068	Temporal single cell transcriptome atlas of zebrafish anterior segment development reveals high degree of conservation between the trabecular meshwork and the annular ligament
GSE218687	Bulk RNA-seq of zebrafish 5dpf embryos comparing Klf9 knockout with matched controls at 3 timepoints flanking zeitgeber (lights on)
GSE219273	Phenotype of stim2 zebrafish knockout
GSE220282	Molecular characterisation of a mutant kras-driven zebrafish model of hepatocellular carcinoma
GSE220834	Chronic dietary exposure to the food preservative tert-Butylhydroquinone (tBHQ) impairs zebrafish (Danio rerio) survival, growth, organ development, and gene expression in Nrf2a-dependent and independent ways
GSE221471	Single-cell RNA-sequencing (scRNA-seq) of GFP+cells isolated from Tg(Brn3c:mGFP) 6 days zebrafish with GFP expression in all hair cells.
GSE223147	BMP-dependent cellular dynamics during cranial suture establishment in zebrafish
GSE223460	Transcriptional profiles of Wnt/beta-catenin signaling activated cardiomyocytes and the others in the atrioventricular canal of zebrafish heart [RNA-seq]
GSE223461	Single cell transcriptional profiles of endothelial cells sorted from the hearts with ablation of Wnt/beta-catenin signaling activating cardiomyocytes and without ablation [scRNA-seq]
GSE223462	Bulk RNA-Seq of Wnt signaling activating cardiomyocytes and scRNA-Seq of endothelial cells and atrioventricular canal cells in zebrafish
GSE224113	A single-cell map of maternal and zygotic mRNA dynamics during cell-type specification in zebrafish embryos [SLAM-seq]
GSE224156	Interplay between calcium cycling and sarcomeres directs cardiomyocyte redifferentiation and maturation during regeneration
GSE224158	Genetic Predisposition to Neuroblastoma Results from a Regulatory Polymorphism that Promotes the Adrenergic Cell State
GSE224859	Kidney Transcriptome and Polycystic Kidney Disease Genes in Zebrafish
GSE224918	A single-cell map of maternal and zygotic mRNA dynamics during cell-type specification in zebrafish embryos [scSLAM-seq]
GSE224919	A single-cell map of maternal and zygotic mRNA dynamics during cell-type specification in zebrafish embryos
GSE225543	Metabolic Disruption in Zebrafish Larvae Due to Exposure to the Pesticides Tefluthrin or Acetochlor
GSE225613	Loss of Dnajc21 leads to cytopenia and altered nucleotide metabolism in zebrafish
GSE225721	Single cell transcriptomics on zebrafish gliovascular niche
GSE226033	The Effects of Rif1 Loss on Gene Expression During Early Zebrafish Development
GSE226222	The Effects of Rif1 Loss on Gene Expression During Early Zebrafish Development [SLAM-seq]
GSE226373	Single cell RNA sequencing unravels the transcriptional network underlying zebrafish retina regeneration
GSE226494	sox1a:eGFP transgenic line and single-cell transcriptomics reveal the origin of zebrafish intraspinal serotonergic neurons
GSE226841	Decoding pancreatic endocrine cell differentiation and beta-cell regeneration in zebrafish
GSE226923	PPARα activation promotes liver progenitor cell-mediated liver regeneration by suppressing YAP signaling in zebrafish
GSE229401	Biallelic variants in CSPG4 cause a novel neurodevelopmental disorder with intellectual disability, global developmental delay and facial anomalies
GSE229821	Sinus venosus adaptation models prolonged cardiovascular disease and reveals insights into evolutionary transitions of the vertebrate heart
GSE230607	The KEAP1-NRF2 pathway regulates TFEB/TFE3-dependent lysosomal biogenesis [RNA-seq: 7dpf_larvae]
GSE230610	The KEAP1-NRF2 pathway regulates TFEB/TFE3-dependent lysosomal biogenesis [RNA-seq: 7dpf_liver]
GSE230611	The KEAP1-NRF2 pathway regulates TFEB/TFE3-dependent lysosomal biogenesis
GSE230829	Effect of APAP-induced acute liver injury on WT and Nrf2KO zebrafish liver gene expression following 12 and 24 hours [RNA-Seq]
GSE230830	To investigate 4-TU labelling kinetics in a novel zebrafish transgenic line (lf:UPRT). [Adult SLAM-Itseq]
GSE230831	SLAM-ITseq identifies that Nrf2 induces liver regeneration through the pentose phosphate pathway [Larval SLAM-Itseq]
GSE230832	SLAM-ITseq identifies that Nrf2 induces liver regeneration through the pentose phosphate pathway
GSE232060	Endocardial cells function as antigen-presenting cells to promote zebrafish heart regeneration [dst93_scrnaseq]
GSE232061	Endocardial cells function as antigen-presenting cells to promote zebrafish heart regeneration
GSE232801	sc-RNAseq of the day 4 zebrafish spinal cord
GSE233488	An organ-specific angiogenic control mechanism for endothelial tailoring
GSE234216	scRNA-seq reveals the diversity of the developing cardiac cell lineage and molecular players in heart rhythm regulation
GSE234990	OXPHOS driven by glycolysis through the malate aspartate shuttle is required for cardiomyocyte re-differentiation and long-term fish heart regeneration
GSE236143	Translation of zinc finger domains induces ribosome collision and Znf598-dependent mRNA decay in zebrafish [RNA-seq]
GSE236146	Translation of zinc finger domains induces ribosome collision and Znf598-dependent mRNA decay in zebrafish
GSE237096	Competition for H2A.Z underlies the developmental impacts of repetitive element de-repression
GSE237276	OXPHOS driven by glycolysis through the malate aspartate shuttle is required for cardiomyocyte re-differentiation and long-term fish heart regeneration [scRNA-seq]
GSE237867	Single-cell transcriptome profiling of zebrafish pancreatic beta-cells segregated by CaMPARI-based calcium labeling.
GSE240238	Molecular Analyses of V0v Spinal Interneurons and Identification of Transcriptional Regulators Downstream of Evx1 and Evx2 in These Cells. [bulk RNA-Seq]
GSE240239	Molecular Analyses of V0v Spinal Interneurons and Identification of Transcriptional Regulators Downstream of Evx1 and Evx2 in These Cells. [scRNA-Seq]
GSE240240	Molecular Analyses of V0v Spinal Interneurons and Identification of Transcriptional Regulators Downstream of Evx1 and Evx2 in These Cells.
GSE240329	Transcriptional profiles of venous and lymphatic endothelial cells from tie1 mutant zebrafish
GSE241156	Interspecies comparison reveals Hmga1 as driver of cardiac regeneration [TOMOseq mouse and zebrafish]
GSE241157	Interspecies comparison reveals Hmga1 as driver of cardiac regeneration [bulk RNAseq Hmga1a OE]
GSE241159	Interspecies comparison reveals Hmga1 as driver of cardiac regeneration
GSE241390	Interspecies comparison reveals Hmga1 as driver of cardiac regeneration [scRNA-seq]
GSE241752	Dynamics of the zebrafish tRNAome during the maternal-to-zygotic transition [RNA-Seq]
GSE241753	Dynamics of the zebrafish tRNAome during the maternal-to-zygotic transition [Ribo-Seq]
GSE241754	Dynamics of the zebrafish tRNAome during the maternal-to-zygotic transition [tRNA-Seq]
GSE241755	Dynamics of the zebrafish tRNAome during the maternal-to-zygotic transition
GSE241971	Identifying hand2 downstream targets in cardiomyocyte during early cardiogenesis
GSE242133	Single-cell RNA sequencing unveils the hidden powers of zebrafish kidney for generating both hematopoiesis and adaptive antiviral immunity
GSE244308	Transcriptomic analysis of Per2-deficient neutrophils compared WT neutrophils following infection.
GSE244550	ABCA7-dependent induction of neuropeptide Y is required for synaptic resilience in Alzheimer's disease through BDNF/NGFR signaling
GSE244768	Clock-driven waves of Tbx6 expression prefigure somite boundaries
GSE245878	Development of a hepatic cryoinjury model to study liver regeneration
GSE246579	scRNAseq of skeletal tissue during zebrafish craniofacial development
GSE246714	Dissecting the spatiotemporal diversity of adult neural stem cells
GSE247934	Slam-seq reveals that miR-430 regulates zygotic mRNA during zebrafish embryogenesis [titration_data]
GSE247935	Slam-seq reveals that miR-430 regulates zygotic mRNA during zebrafish embryogenesis
GSE250263	EVOLUTIONARY CO-OPTION OF AN ANCESTRAL CLOACAL REGULATORY LANDSCAPE WITH THE EMERGENCE OF DIGITS AND GENITALS [ATAC-seq]
GSE250267	EVOLUTIONARY CO-OPTION OF AN ANCESTRAL CLOACAL REGULATORY LANDSCAPE WITH THE EMERGENCE OF DIGITS AND GENITALS
GSE251828	Compartmentalization and synergy of osteoblasts drive bone formation in the regenerating fin
GSE252004	Structurally Diverse PFAS Produce Unique Transcriptomic Changes Linked to Developmental Toxicity in Zebrafish
GSE253445	Paternal starvation affects metabolic gene expression during zebrafish offspring development and life-long fitness
GSE254036	miR214 regulates sex determination through gsdf in zebrafish
GSE255303	Ctla-4 deficiency induces an inflammatory bowel disease-like phenotype in a zebrafish model [scRNA-seq]
GSE256288	Uncoupled H3K9me3 nucleation and reinforcement during early zebrafish embryogenesis
GSE259418	Thymic mimetic cells in zebrafish
GSE261604	Single-cell transcriptional profiles of the atrioventricular canal of 1-month-old zebrafish treated with DMSO or IWR-1-endo
GSE261619	Decoding the molecular, cellular, and functional heterogeneity of zebrafish intracardiac nervous system
GSE261646	Protein profiling of zebrafish embryos unmasks regulatory layers during early embryogenesis.
GSE261835	Super-fast generation of all-X sperm grass carp by female germline stem cell transplantation
GSE263481	GPI transamidase complex is required for primordial germ cell migration and development in zebrafish
GSE264143	Adamts9 Is Required for Development of Primary Ovarian Follicles and Maintenance of Female Sex in Zebrafish
GSE264309	Loss of Stim2 in zebrafish induces retinal gene expression cellular changes resembling glaucoma characteristics [RNA-seq]
GSE264312	Loss of Stim2 in zebrafish induces retinal gene expression cellular changes resembling glaucoma characteristics.
GSE267332	Integration of ATAC and RNA-Sequencing identifies chromatin and transcriptomic signatures in classical and non-classical zebrafish osteoblasts and indicates mechanisms of entpd5a regulation [ATAC]
GSE267406	rbm24a is an organizer component of germ plasm to determine germ cell fate
GSE268076	Small molecule ML233 is a direct inhibitor of tyrosinase function and reduces melanoma proliferation
GSE268286	CRISPR-RfxCas13d screening uncovers Bckdk as a post-translational regulator of the maternal-to-zygotic transition in teleosts [RNA 6hpf]
GSE268288	CRISPR-RfxCas13d screening uncovers Bckdk as a post-translational regulator of the maternal-to-zygotic transition in teleosts [RNA maternal screening]
GSE268294	CRISPR-RfxCas13d screening uncovers Bckdk as a post-translational regulator of the maternal-to-zygotic transition in teleosts
GSE268538	prdm1a is at the Core of Lateral Line Sensory Hair Cell Developmental and Evolutionary Gene Regulatory Networks
GSE269232	Transcriptomic neuron types vary topographically in function and morphology
GSE269784	Cell state transitions are decoupled from cell division during early embryo development [I]
GSE269795	H3K4me2 distinguishes a distinct class of enhancers during the maternal-to-zygotic transition
GSE270112	Gpnmb is required for immune and fibrotic responses during zebrafish heart regeneration
GSE270309	Endolysosomal dysfunction in radial glia progenitor cells leads to defective cerebral angiogenesis and compromised blood-brain barrier integrity
GSE270356	Specific oncogene activation of the cell of origin in mucosal melanoma [SORT-seq]
GSE270527	Enhanced RNA-targeting CRISPR-Cas technology in zebrafish I
GSE270529	Enhanced RNA-targeting CRISPR-Cas technology in zebrafish III
GSE270724	Enhanced RNA-targeting CRISPR-Cas technology in zebrafish
GSE271002	A novel zebrafish model of intestinal epithelial damage reveals macrophages and igfbp1a as major modulators of mucosal healing
GSE271113	Neutrophil immune profile guides spinal cord regeneration in zebrafish
GSE272199	Znf706 regulates germplasm formation and primordial germ cell development in zebrafish
GSE274063	Identifying the molecular basis for functional divergence of duplicated SOX factors controlling endoderm formation and left-right patterning in zebrafish
GSE275163	Single-cell RNA sequencing to reveal tissue-specific transcriptomic changes induced by perfluorooctanesulfonic acid (PFOS) in larval zebrafish (Danio rerio)
GSE275308	Single cell RNA sequencing (scRNA-seq) of embryonic zebrafish and human aortic endothelial cells following flow modulation
GSE275992	ZNF574 is a Quality Control Factor for Defective Ribosome Biogenesis Intermediates [RNA-Seq]
GSE279170	Zebrafish are resilient to the loss of major diacylglycerol acyltransferase enzymes
GSE280398	Origin of Ewing sarcoma by embryonic reprogramming of neural crest to mesoderm
GSE283803	A single-cell multiomics roadmap of zebrafish spermatogenesis reveals conserved regulatory principles of male germline formation [scATAC-Seq]
GSE283840	Anti-Müllerian hormone signalling sustains circadian homeostasis in zebrafish [scRNA-seq]
GSE283957	Dose-dependent effects of dibutyl phthalate on embryonic development in zebrafish (Danio rerio): The value of integrating concentration gradients in transcriptomic analyses
GSE284214	CFTR acts as a potential therapeutic target for attention deficit-hyperactivity disorder
GSE288160	Insulin-like growth factor signalling regulates zebrafish lymphatic vessel development
GSE288775	Neurobehavioral phenotypes in the pan-neuronal GAL4 zebrafish line Tg(elavl3:KalTA4)
GSE293779	CRISPR-RfxCas13d screening uncovers Bckdk as a post-translational regulator of the maternal-to-zygotic transition in teleosts [RNA-Seq rescue]
GSE294761	Functional genomics analysis of developing zebrafish and human endoderm reveals highly conserved cis-regulatory modules controlling vertebrate organogenesis [ATAC-seq]
GSE294778	Investigation into molecular mechanisms behind microbiome and normal neurobehavioral development in zebrafish
GSE295384	ATF3 Overexpression Induces Cardiac Hypertrophy and Electrical Dysfunction through Enhanced Proliferation in Zebrafish
GSE295724	Neuronal microexons modulate arousal via the cAMP-PKA-CREB pathway in zebrafish
GSE296469	Inhibition of TGF-beta signalling during zebrafish larval tail regeneration.
GSE296640	Blood vessel-resident macrophages safeguard blood and vessel integrity in zebrafish
GSE297706	Axonal defasciculation is restricted to specific branching points during regeneration of the lateral line nerve in zebrafish
GSE297759	Lysosome-Related Organelles Orchestrate Biogenic Crystal Formation in Pigment Cells
GSE297911	Bisphenols exposure induces bone loss and osteoporosis by binding to and activating the endocannabin
GSE300039	Single-cell and in situ spatial analyses reveal the diversity of newly born hematopoietic stem cells and of their niches [scRNA-Seq]
GSE300363	https://www.ncbi.nlm.nih.gov/geo/
GSE305090	In vivo single-cell RNA metabolic labeling resolves early transcriptional responders in the regenerating zebrafish heart [bulk_slamseq]
GSE305094	In vivo single-cell RNA metabolic labeling resolves early transcriptional responders in the regenerating zebrafish heart [scrna-seq]
GSE309286	A single-cell transcriptomic atlas of inner ear morphogenesis in zebrafish
GSE309821	Enhancer-directed gene delivery for digit regeneration based on conserved epidermal factors [scRNA-seq]
GSE313050	Cell-autonomous control coupled with tissue context regulates the cessation of migration at the site of organ development
GSE314322	Gene regulatory programs underlying diversification of facial ligaments and tendons in zebrafish
GSE314610	isl1a Coordinates Onset and Termination of Regeneration of the Zebrafish Lateral Line
GSE316223	An In Vivo Model of a-Synuclein Spread from Gut to Brain
GSE325727	Dextran-coated Iron Oxide Nanoparticles impairs cardiac function in zebrafish larvae
GSE330025	Asialogycoprotein receptor subunit ASGR1a deficiency leads to cholesterol malabsorption in zebrafish on a high-cholesterol diet
GSE330159	Bulk RNA-sequencing of pooled 53 hpf wild-type and iqgap1-/- hemorrhage-positive mutant embryos