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Platform GPL20608 Query DataSets for GPL20608
Status Public on Jul 01, 2015
Title Agilent-046856 1kG-SV-1M-updated-2
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16046856 or 2546856.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

 
Submission date Jun 23, 2015
Last update date Jul 01, 2015
Contact name Charles Lee
Organization name Jackson Laboratory for Genomic Medicine
Lab Lee Lab
Street address 10 Discovery Dr.
City Farmington
State/province CT
ZIP/Postal code 06032
Country USA
 
Samples (2534) GSM1718068, GSM1718069, GSM1718070, GSM1718071, GSM1718072, GSM1718073 
Series (1)
GSE70188 1000 Genomes Phase 3 aCGH samples

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBankAccession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description

Data table
ID COL ROW SPOT_ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION
1 534 1824 HsCGHBrightCorner pos
2 534 1822 DarkCorner pos
3 534 1820 DarkCorner pos
4 534 1818 U2_MEI-2-221697733-2 FALSE chr2:221697704-221697763
5 534 1816 U2_P30_6810_11_b FALSE chr11:86285932-86285991
6 534 1814 U2_A_16_P03260643-1 FALSE chr17:51427850-51427909
7 534 1812 U2_1KGgnt_AA_16_P31592733 FALSE chr5:140222842-140222886
8 534 1810 U2_P15_1827_21_i FALSE chr21:44571332-44571391
9 534 1808 U2_1KGgnt_422_n-hg18 FALSE chrsupernode_48959:1-60
10 534 1806 U2_1KGval_19441_8_i FALSE chr8:73012266-73012325
11 534 1804 U2_P30_8362_1_b FALSE chr1:107777536-107777595
12 534 1802 U2_MEI-9-1850725-2 FALSE chr9:1850696-1850755
13 534 1800 U2_P15_A_18_P20178606 FALSE chr14:94140793-94140838
14 534 1798 U2_A_16_P02018995-1 FALSE chr8:128187374-128187433
15 534 1796 U2_P30_A_16_P16938730-1 FALSE chr4:165448476-165448535
16 534 1794 U2_1KGgnt_5304_19_i FALSE chr19:54806798-54806857
17 534 1792 U2_P30_7654_3_b FALSE chr3:161635662-161635721
18 534 1790 U2_P30_A_16_P03180049-1 FALSE chr16:77206433-77206492
19 534 1788 U2_P30_A_18_P17586705-1 FALSE chr1:58621791-58621850
20 534 1786 U2_A_16_P03088370-1 FALSE chr15:94819402-94819461

Total number of rows: 974016

Table truncated, full table size 70620 Kbytes.




Download family Format
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Supplementary data files not provided

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