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Status
Public on Jul 01, 2015
Title
Agilent-046856 1kG-SV-1M-updated-2
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens
Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
Arrays of this design have barcodes that begin with 16046856 or 2546856. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
Submission date
Jun 23, 2015
Last update date
Jul 01, 2015
Contact name
Charles Lee
Organization name
Jackson Laboratory for Genomic Medicine
Lab
Lee Lab
Street address
10 Discovery Dr.
City
Farmington
State/province
CT
ZIP/Postal code
06032
Country
USA
Samples (2534)
GSM1718068 , GSM1718069 , GSM1718070 , GSM1718071 , GSM1718072 , GSM1718073
GSM1718074 ,
GSM1718075 ,
GSM1718076 ,
GSM1718077 ,
GSM1718078 ,
GSM1718079 ,
GSM1718080 ,
GSM1718081 ,
GSM1718082 ,
GSM1718083 ,
GSM1718084 ,
GSM1718085 ,
GSM1718086 ,
GSM1718087 ,
GSM1718088 ,
GSM1718089 ,
GSM1718090 ,
GSM1718091 ,
GSM1718092 ,
GSM1718093 ,
GSM1718094 ,
GSM1718095 ,
GSM1718096 ,
GSM1718097 ,
GSM1718098 ,
GSM1718099 ,
GSM1718100 ,
GSM1718101 ,
GSM1718102 ,
GSM1718103 ,
GSM1718104 ,
GSM1718105 ,
GSM1718106 ,
GSM1718107 ,
GSM1718108 ,
GSM1718109 ,
GSM1718110 ,
GSM1718111 ,
GSM1718112 ,
GSM1718113 ,
GSM1718114 ,
GSM1718115 ,
GSM1718116 ,
GSM1718117 ,
GSM1718118 ,
GSM1718119 ,
GSM1718120 ,
GSM1718121 ,
GSM1718122 ,
GSM1718123 ,
GSM1718124 ,
GSM1718125 ,
GSM1718126 ,
GSM1718127 ,
GSM1718128 ,
GSM1718129 ,
GSM1718130 ,
GSM1718131 ,
GSM1718132 ,
GSM1718133 ,
GSM1718134 ,
GSM1718135 ,
GSM1718136 ,
GSM1718137 ,
GSM1718138 ,
GSM1718139 ,
GSM1718140 ,
GSM1718141 ,
GSM1718142 ,
GSM1718143 ,
GSM1718144 ,
GSM1718145 ,
GSM1718146 ,
GSM1718147 ,
GSM1718148 ,
GSM1718149 ,
GSM1718150 ,
GSM1718151 ,
GSM1718152 ,
GSM1718153 ,
GSM1718154 ,
GSM1718155 ,
GSM1718156 ,
GSM1718157 ,
GSM1718158 ,
GSM1718159 ,
GSM1718160 ,
GSM1718161 ,
GSM1718162 ,
GSM1718163 ,
GSM1718164 ,
GSM1718165 ,
GSM1718166 ,
GSM1718167 ,
GSM1718168 ,
GSM1718169 ,
GSM1718170 ,
GSM1718171 ,
GSM1718172 ,
GSM1718173 ,
GSM1718174 ,
GSM1718175 ,
GSM1718176 ,
GSM1718177 ,
GSM1718178 ,
GSM1718179 ,
GSM1718180 ,
GSM1718181 ,
GSM1718182 ,
GSM1718183 ,
GSM1718184 ,
GSM1718185 ,
GSM1718186 ,
GSM1718187 ,
GSM1718188 ,
GSM1718189 ,
GSM1718190 ,
GSM1718191 ,
GSM1718192 ,
GSM1718193 ,
GSM1718194 ,
GSM1718195 ,
GSM1718196 ,
GSM1718197 ,
GSM1718198 ,
GSM1718199 ,
GSM1718200 ,
GSM1718201 ,
GSM1718202 ,
GSM1718203 ,
GSM1718204 ,
GSM1718205 ,
GSM1718206 ,
GSM1718207 ,
GSM1718208 ,
GSM1718209 ,
GSM1718210 ,
GSM1718211 ,
GSM1718212 ,
GSM1718213 ,
GSM1718214 ,
GSM1718215 ,
GSM1718216 ,
GSM1718217 ,
GSM1718218 ,
GSM1718219 ,
GSM1718220 ,
GSM1718221 ,
GSM1718222 ,
GSM1718223 ,
GSM1718224 ,
GSM1718225 ,
GSM1718226 ,
GSM1718227 ,
GSM1718228 ,
GSM1718229 ,
GSM1718230 ,
GSM1718231 ,
GSM1718232 ,
GSM1718233 ,
GSM1718234 ,
GSM1718235 ,
GSM1718236 ,
GSM1718237 ,
GSM1718238 ,
GSM1718239 ,
GSM1718240 ,
GSM1718241 ,
GSM1718242 ,
GSM1718243 ,
GSM1718244 ,
GSM1718245 ,
GSM1718246 ,
GSM1718247 ,
GSM1718248 ,
GSM1718249 ,
GSM1718250 ,
GSM1718251 ,
GSM1718252 ,
GSM1718253 ,
GSM1718254 ,
GSM1718255 ,
GSM1718256 ,
GSM1718257 ,
GSM1718258 ,
GSM1718259 ,
GSM1718260 ,
GSM1718261 ,
GSM1718262 ,
GSM1718263 ,
GSM1718264 ,
GSM1718265 ,
GSM1718266 ,
GSM1718267 ,
GSM1718268 ,
GSM1718269 ,
GSM1718270 ,
GSM1718271 ,
GSM1718272 ,
GSM1718273 ,
GSM1718274 ,
GSM1718275 ,
GSM1718276 ,
GSM1718277 ,
GSM1718278 ,
GSM1718279 ,
GSM1718280 ,
GSM1718281 ,
GSM1718282 ,
GSM1718283 ,
GSM1718284 ,
GSM1718285 ,
GSM1718286 ,
GSM1718287 ,
GSM1718288 ,
GSM1718289 ,
GSM1718290 ,
GSM1718291 ,
GSM1718292 ,
GSM1718293 ,
GSM1718294 ,
GSM1718295 ,
GSM1718296 ,
GSM1718297 ,
GSM1718298 ,
GSM1718299 ,
GSM1718300 ,
GSM1718301 ,
GSM1718302 ,
GSM1718303 ,
GSM1718304 ,
GSM1718305 ,
GSM1718306 ,
GSM1718307 ,
GSM1718308 ,
GSM1718309 ,
GSM1718310 ,
GSM1718311 ,
GSM1718312 ,
GSM1718313 ,
GSM1718314 ,
GSM1718315 ,
GSM1718316 ,
GSM1718317 ,
GSM1718318 ,
GSM1718319 ,
GSM1718320 ,
GSM1718321 ,
GSM1718322 ,
GSM1718323 ,
GSM1718324 ,
GSM1718325 ,
GSM1718326 ,
GSM1718327 ,
GSM1718328 ,
GSM1718329 ,
GSM1718330 ,
GSM1718331 ,
GSM1718332 ,
GSM1718333 ,
GSM1718334 ,
GSM1718335 ,
GSM1718336 ,
GSM1718337 ,
GSM1718338 ,
GSM1718339 ,
GSM1718340 ,
GSM1718341 ,
GSM1718342 ,
GSM1718343 ,
GSM1718344 ,
GSM1718345 ,
GSM1718346 ,
GSM1718347 ,
GSM1718348 ,
GSM1718349 ,
GSM1718350 ,
GSM1718351 ,
GSM1718352 ,
GSM1718353 ,
GSM1718354 ,
GSM1718355 ,
GSM1718356 ,
GSM1718357 ,
GSM1718358 ,
GSM1718359 ,
GSM1718360 ,
GSM1718361 ,
GSM1718362 ,
GSM1718363 ,
GSM1718364 ,
GSM1718365 ,
GSM1718366 ,
GSM1718367 ,
GSM1718368 ,
GSM1718369 ,
GSM1718370 ,
GSM1718371 ,
GSM1718372 ,
GSM1718373 ,
GSM1718374 ,
GSM1718375 ,
GSM1718376 ,
GSM1718377 ,
GSM1718378 ,
GSM1718379 ,
GSM1718380 ,
GSM1718381 ,
GSM1718382 ,
GSM1718383 ,
GSM1718384 ,
GSM1718385 ,
GSM1718386 ,
GSM1718387 ,
GSM1718388 ,
GSM1718389 ,
GSM1718390 ,
GSM1718391 ,
GSM1718392 ,
GSM1718393 ,
GSM1718394 ,
GSM1718395 ,
GSM1718396 ,
GSM1718397 ,
GSM1718398 ,
GSM1718399 ,
GSM1718400 ,
GSM1718401 ,
GSM1718402 ,
GSM1718403 ,
GSM1718404 ,
GSM1718405 ,
GSM1718406 ,
GSM1718407 ,
GSM1718408 ,
GSM1718409 ,
GSM1718410 ,
GSM1718411 ,
GSM1718412 ,
GSM1718413 ,
GSM1718414 ,
GSM1718415 ,
GSM1718416 ,
GSM1718417 ,
GSM1718418 ,
GSM1718419 ,
GSM1718420 ,
GSM1718421 ,
GSM1718422 ,
GSM1718423 ,
GSM1718424 ,
GSM1718425 ,
GSM1718426 ,
GSM1718427 ,
GSM1718428 ,
GSM1718429 ,
GSM1718430 ,
GSM1718431 ,
GSM1718432 ,
GSM1718433 ,
GSM1718434 ,
GSM1718435 ,
GSM1718436 ,
GSM1718437 ,
GSM1718438 ,
GSM1718439 ,
GSM1718440 ,
GSM1718441 ,
GSM1718442 ,
GSM1718443 ,
GSM1718444 ,
GSM1718445 ,
GSM1718446 ,
GSM1718447 ,
GSM1718448 ,
GSM1718449 ,
GSM1718450 ,
GSM1718451 ,
GSM1718452 ,
GSM1718453 ,
GSM1718454 ,
GSM1718455 ,
GSM1718456 ,
GSM1718457 ,
GSM1718458 ,
GSM1718459 ,
GSM1718460 ,
GSM1718461 ,
GSM1718462 ,
GSM1718463 ,
GSM1718464 ,
GSM1718465 ,
GSM1718466 ,
GSM1718467 ,
GSM1718468 ,
GSM1718469 ,
GSM1718470 ,
GSM1718471 ,
GSM1718472 ,
GSM1718473 ,
GSM1718474 ,
GSM1718475 ,
GSM1718476 ,
GSM1718477 ,
GSM1718478 ,
GSM1718479 ,
GSM1718480 ,
GSM1718481 ,
GSM1718482 ,
GSM1718483 ,
GSM1718484 ,
GSM1718485 ,
GSM1718486 ,
GSM1718487 ,
GSM1718488 ,
GSM1718489 ,
GSM1718490 ,
GSM1718491 ,
GSM1718492 ,
GSM1718493 ,
GSM1718494 ,
GSM1718495 ,
GSM1718496 ,
GSM1718497 ,
GSM1718498 ,
GSM1718499 ,
GSM1718500 ,
GSM1718501 ,
GSM1718502 ,
GSM1718503 ,
GSM1718504 ,
GSM1718505 ,
GSM1718506 ,
GSM1718507 ,
GSM1718508 ,
GSM1718509 ,
GSM1718510 ,
GSM1718511 ,
GSM1718512 ,
GSM1718513 ,
GSM1718514 ,
GSM1718515 ,
GSM1718516 ,
GSM1718517 ,
GSM1718518 ,
GSM1718519 ,
GSM1718520 ,
GSM1718521 ,
GSM1718522 ,
GSM1718523 ,
GSM1718524 ,
GSM1718525 ,
GSM1718526 ,
GSM1718527 ,
GSM1718528 ,
GSM1718529 ,
GSM1718530 ,
GSM1718531 ,
GSM1718532 ,
GSM1718533 ,
GSM1718534 ,
GSM1718535 ,
GSM1718536 ,
GSM1718537 ,
GSM1718538 ,
GSM1718539 ,
GSM1718540 ,
GSM1718541 ,
GSM1718542 ,
GSM1718543 ,
GSM1718544 ,
GSM1718545 ,
GSM1718546 ,
GSM1718547 ,
GSM1718548 ,
GSM1718549 ,
GSM1718550 ,
GSM1718551 ,
GSM1718552 ,
GSM1718553 ,
GSM1718554 ,
GSM1718555 ,
GSM1718556 ,
GSM1718557 ,
GSM1718558 ,
GSM1718559 ,
GSM1718560 ,
GSM1718561 ,
GSM1718562 ,
GSM1718563 ,
GSM1718564 ,
GSM1718565 ,
GSM1718566 ,
GSM1718567 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here
Series (1)
GSE70188
1000 Genomes Phase 3 aCGH samples
Data table header descriptions
ID
Agilent feature number
COL
Column
ROW
Row
SPOT_ID
Spot identifier
CONTROL_TYPE
Control type
GB_ACC
GenBankAccession
GENE_SYMBOL
Gene Symbol
GENE_NAME
Gene Name
ACCESSION_STRING
Accession String
CHROMOSOMAL_LOCATION
Chromosomal Location
CYTOBAND
Cytoband
DESCRIPTION
Description
Data table
ID
COL
ROW
SPOT_ID
CONTROL_TYPE
GB_ACC
GENE_SYMBOL
GENE_NAME
ACCESSION_STRING
CHROMOSOMAL_LOCATION
CYTOBAND
DESCRIPTION
1
534
1824
HsCGHBrightCorner
pos
2
534
1822
DarkCorner
pos
3
534
1820
DarkCorner
pos
4
534
1818
U2_MEI-2-221697733-2
FALSE
chr2:221697704-221697763
5
534
1816
U2_P30_6810_11_b
FALSE
chr11:86285932-86285991
6
534
1814
U2_A_16_P03260643-1
FALSE
chr17:51427850-51427909
7
534
1812
U2_1KGgnt_AA_16_P31592733
FALSE
chr5:140222842-140222886
8
534
1810
U2_P15_1827_21_i
FALSE
chr21:44571332-44571391
9
534
1808
U2_1KGgnt_422_n-hg18
FALSE
chrsupernode_48959:1-60
10
534
1806
U2_1KGval_19441_8_i
FALSE
chr8:73012266-73012325
11
534
1804
U2_P30_8362_1_b
FALSE
chr1:107777536-107777595
12
534
1802
U2_MEI-9-1850725-2
FALSE
chr9:1850696-1850755
13
534
1800
U2_P15_A_18_P20178606
FALSE
chr14:94140793-94140838
14
534
1798
U2_A_16_P02018995-1
FALSE
chr8:128187374-128187433
15
534
1796
U2_P30_A_16_P16938730-1
FALSE
chr4:165448476-165448535
16
534
1794
U2_1KGgnt_5304_19_i
FALSE
chr19:54806798-54806857
17
534
1792
U2_P30_7654_3_b
FALSE
chr3:161635662-161635721
18
534
1790
U2_P30_A_16_P03180049-1
FALSE
chr16:77206433-77206492
19
534
1788
U2_P30_A_18_P17586705-1
FALSE
chr1:58621791-58621850
20
534
1786
U2_A_16_P03088370-1
FALSE
chr15:94819402-94819461
Total number of rows: 974016 Table truncated, full table size 70620 Kbytes .
Supplementary data files not provided