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Status
Public on Jul 20, 2005
Title
Medicago truncatula Genome Oligo Set
Technology type
spotted oligonucleotide
Distribution
non-commercial
Organism
Medicago truncatula
Description
The Medicago Genome Oligo Set Version 1.0 (Qiagen Operon, Alameda, CA) includes 70-mer oligonucleotides representing 16,086 M. truncatula tentative consensus sequences (TCs) from The Institute of Genome Research (TIGR) Gene Index Database (www.tigr.org/tdb/tgi/mtgi/) MtGI Release 5.0 as well as both positive and negative controls. Details of this oligo set are available at http://oligos.qiagen.com/arrays/omad.php. The oligos were spotted in 3x SSC onto Superamine (Telechem) glass slides by the Galbraith lab at the University of Arizona (Tucson, AZ). A single array element was printed per oligo. After printing, slides were baked at 80°C for 1 hour and stored at RT. Keywords = Medicago Keywords = legume
Contributor(s)
Galbraith DW
Submission date
Apr 19, 2005
Last update date
Jul 13, 2006
Contact name
Bettina Deavours
E-mail(s)
bedeavours@noble.org
Phone
580-224-6600
Organization name
Samuel Roberts Noble Foundation
Street address
City
Ardmore
State/province
OK
ZIP/Postal code
73401
Country
USA
Samples (9)
GSM48532 , GSM48538 , GSM48540 , GSM48542 , GSM48544 , GSM48545
Series (1)
Data table header descriptions
ID
Gene ID
TIGR Medicago Gene Index Tentative Consensus sequence
Description
TC annotation
Block
Block
Row
Row
Column
Column
SPOT_ID
TIGR Contig number
Data table
ID
Gene ID
Description
Block
Row
Column
SPOT_ID
MT00001
TC43772
similar to GP|16549089|dbj|BAB70751. respiratory burst oxidase homolog {Solanum tuberosum}, partial (41%)
1
1
1
TIGR contig TC43772
MT00002
TC43801
1
1
2
TIGR contig TC43801
MT00003
TC43828
similar to PIR|E96789|E96789 protein T23E18.10 [imported] - Arabidopsis thaliana, partial (85%)
1
1
3
TIGR contig TC43828
MT00004
TC43868
similar to GP|1370182|emb|CAA98168.1 RAB7A {Lotus japonicus}, complete
1
1
4
TIGR contig TC43868
MT00005
TC43767
similar to GP|2665890|gb|AAB88537.1| calcium-dependent protein kinase {Fragaria x ananassa}, partial (68%)
1
1
5
TIGR contig TC43767
MT00006
TC43796
weakly similar to GP|13161397|dbj|BAB33033. CPRD2 {Vigna unguiculata}, partial (32%)
1
1
6
TIGR contig TC43796
MT00007
TC43824
similar to SP|O04130|SERA_ARATH D-3-phosphoglycerate dehydrogenase chloroplast precursor (EC 1.1.1.95) (PGDH). [Mouse-ear cress], partial (37%)
1
1
7
TIGR contig TC43824
MT00008
TC43858
similar to PIR|T10804|T10804 tonoplast intrinsic protein delta type - upland cotton, complete
1
1
8
TIGR contig TC43858
MT00009
TC43762
1
1
9
TIGR contig TC43762
MT00010
TC43791
homologue to GP|13936812|gb|AAK49947.1 TGF-beta receptor-interacting protein 1 {Phaseolus vulgaris}, complete
1
1
10
TIGR contig TC43791
MT00011
TC43820
similar to GP|9759504|dbj|BAB10754.1 gene_id:MDK4.13~unknown protein {Arabidopsis thaliana}, partial (29%)
1
1
11
TIGR contig TC43820
MT00012
TC43852
similar to GP|4510383|gb|AAD21471.1| unknown protein {Arabidopsis thaliana}, partial (78%)
1
1
12
TIGR contig TC43852
MT00013
TC43191
similar to PIR|T07086|T07086 acid phosphatase (EC 3.1.3.-) - soybean, complete
1
1
13
TIGR contig TC43191
MT00014
TC43245
similar to PIR|T04804|T04804 hypothetical protein F10M23.150 - Arabidopsis thaliana, partial (70%)
1
1
14
TIGR contig TC43245
MT00015
TC43299
similar to GP|10177925|dbj|BAB11336. NADH dehydrogenase 10.5K chain-like protein {Arabidopsis thaliana}, partial (95%)
1
1
15
TIGR contig TC43299
MT00016
TC43347
homologue to PIR|F84790|F84790 40S ribosomal protein S5 [imported] - Arabidopsis thaliana, partial (91%)
1
1
16
TIGR contig TC43347
MT00017
TC43184
homologue to SP|P27520|CB23_PEA Chlorophyll A-B binding protein 215 chloroplast precursor (LHCII type II CAB-215) (LHCP)., complete
1
1
17
TIGR contig TC43184
MT00018
TC43235
similar to SP|Q96471|DCAM_PHANI S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50) (AdoMetDC) (SamDC), partial (83%)
1
1
18
TIGR contig TC43235
MT00019
TC43281
isoflavone reductase
1
1
19
TIGR contig TC43281
MT00020
TC43343
similar to GP|13489167|gb|AAK27801.1 60S ribosomal protein L21 {Oryza sativa}, complete
1
1
20
TIGR contig TC43343
Total number of rows: 16928 Table truncated, full table size 1855 Kbytes .
Supplementary data files not provided