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Platform GPL1971 Query DataSets for GPL1971
Status Public on Jul 20, 2005
Title Medicago truncatula Genome Oligo Set
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Medicago truncatula
 
Description The Medicago Genome Oligo Set Version 1.0 (Qiagen Operon, Alameda, CA) includes 70-mer oligonucleotides representing 16,086 M. truncatula tentative consensus sequences (TCs) from The Institute of Genome Research (TIGR) Gene Index Database (www.tigr.org/tdb/tgi/mtgi/) MtGI Release 5.0 as well as both positive and negative controls. Details of this oligo set are available at http://oligos.qiagen.com/arrays/omad.php. The oligos were spotted in 3x SSC onto Superamine (Telechem) glass slides by the Galbraith lab at the University of Arizona (Tucson, AZ). A single array element was printed per oligo. After printing, slides were baked at 80°C for 1 hour and stored at RT.
Keywords = Medicago
Keywords = legume
 
Contributor(s) Galbraith DW
Submission date Apr 19, 2005
Last update date Jul 13, 2006
Contact name Bettina Deavours
E-mail(s) bedeavours@noble.org
Phone 580-224-6600
Organization name Samuel Roberts Noble Foundation
Street address
City Ardmore
State/province OK
ZIP/Postal code 73401
Country USA
 
Samples (9) GSM48532, GSM48538, GSM48540, GSM48542, GSM48544, GSM48545 
Series (1)
GSE2546 MtIFS1-expressing alfalfa

Data table header descriptions
ID
Gene ID TIGR Medicago Gene Index Tentative Consensus sequence
Description TC annotation
Block Block
Row Row
Column Column
SPOT_ID TIGR Contig number

Data table
ID Gene ID Description Block Row Column SPOT_ID
MT00001 TC43772 similar to GP|16549089|dbj|BAB70751. respiratory burst oxidase homolog {Solanum tuberosum}, partial (41%) 1 1 1 TIGR contig TC43772
MT00002 TC43801 1 1 2 TIGR contig TC43801
MT00003 TC43828 similar to PIR|E96789|E96789 protein T23E18.10 [imported] - Arabidopsis thaliana, partial (85%) 1 1 3 TIGR contig TC43828
MT00004 TC43868 similar to GP|1370182|emb|CAA98168.1 RAB7A {Lotus japonicus}, complete 1 1 4 TIGR contig TC43868
MT00005 TC43767 similar to GP|2665890|gb|AAB88537.1| calcium-dependent protein kinase {Fragaria x ananassa}, partial (68%) 1 1 5 TIGR contig TC43767
MT00006 TC43796 weakly similar to GP|13161397|dbj|BAB33033. CPRD2 {Vigna unguiculata}, partial (32%) 1 1 6 TIGR contig TC43796
MT00007 TC43824 similar to SP|O04130|SERA_ARATH D-3-phosphoglycerate dehydrogenase chloroplast precursor (EC 1.1.1.95) (PGDH). [Mouse-ear cress], partial (37%) 1 1 7 TIGR contig TC43824
MT00008 TC43858 similar to PIR|T10804|T10804 tonoplast intrinsic protein delta type - upland cotton, complete 1 1 8 TIGR contig TC43858
MT00009 TC43762 1 1 9 TIGR contig TC43762
MT00010 TC43791 homologue to GP|13936812|gb|AAK49947.1 TGF-beta receptor-interacting protein 1 {Phaseolus vulgaris}, complete 1 1 10 TIGR contig TC43791
MT00011 TC43820 similar to GP|9759504|dbj|BAB10754.1 gene_id:MDK4.13~unknown protein {Arabidopsis thaliana}, partial (29%) 1 1 11 TIGR contig TC43820
MT00012 TC43852 similar to GP|4510383|gb|AAD21471.1| unknown protein {Arabidopsis thaliana}, partial (78%) 1 1 12 TIGR contig TC43852
MT00013 TC43191 similar to PIR|T07086|T07086 acid phosphatase (EC 3.1.3.-) - soybean, complete 1 1 13 TIGR contig TC43191
MT00014 TC43245 similar to PIR|T04804|T04804 hypothetical protein F10M23.150 - Arabidopsis thaliana, partial (70%) 1 1 14 TIGR contig TC43245
MT00015 TC43299 similar to GP|10177925|dbj|BAB11336. NADH dehydrogenase 10.5K chain-like protein {Arabidopsis thaliana}, partial (95%) 1 1 15 TIGR contig TC43299
MT00016 TC43347 homologue to PIR|F84790|F84790 40S ribosomal protein S5 [imported] - Arabidopsis thaliana, partial (91%) 1 1 16 TIGR contig TC43347
MT00017 TC43184 homologue to SP|P27520|CB23_PEA Chlorophyll A-B binding protein 215 chloroplast precursor (LHCII type II CAB-215) (LHCP)., complete 1 1 17 TIGR contig TC43184
MT00018 TC43235 similar to SP|Q96471|DCAM_PHANI S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50) (AdoMetDC) (SamDC), partial (83%) 1 1 18 TIGR contig TC43235
MT00019 TC43281 isoflavone reductase 1 1 19 TIGR contig TC43281
MT00020 TC43343 similar to GP|13489167|gb|AAK27801.1 60S ribosomal protein L21 {Oryza sativa}, complete 1 1 20 TIGR contig TC43343

Total number of rows: 16928

Table truncated, full table size 1855 Kbytes.






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