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Status
Public on Jul 30, 2015
Title
Custom 720K array (100914_HG19_IS_CGH_HX3, OID: 31268, Roche-NimbleGen Madison, WI, USA)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens Manufacturer
Roche NimbleGen
Manufacture protocol
Maskless Array Synthesizer; see manufacturer's web site www.nimblegen.com
Description
Build: hg19
Submission date
Nov 25, 2014
Last update date
Aug 01, 2015
Contact name
Arkadiusz Piotrowski
Organization name
Medical University of Gdansk
Department
Biology and Pharmaceutical Botany
Lab
Microarray Facility
Street address
Hallera 107
City
Gdansk
ZIP/Postal code
80-416
Country
Poland
Samples (63)
GSM1554010 , GSM1554011 , GSM1554012 , GSM1554013 , GSM1554014 , GSM1554015
GSM1554016 ,
GSM1554017 ,
GSM1554018 ,
GSM1554019 ,
GSM1554020 ,
GSM1554021 ,
GSM1554022 ,
GSM1554023 ,
GSM1554024 ,
GSM1554025 ,
GSM1554026 ,
GSM1554027 ,
GSM1554028 ,
GSM1554029 ,
GSM1554030 ,
GSM1554031 ,
GSM1554032 ,
GSM1554033 ,
GSM1554034 ,
GSM1554035 ,
GSM1554036 ,
GSM1554038 ,
GSM1554039 ,
GSM1554040 ,
GSM1554041 ,
GSM1554044 ,
GSM1554049 ,
GSM1554054 ,
GSM1554059 ,
GSM1554063 ,
GSM1554067 ,
GSM1554072 ,
GSM1554077 ,
GSM1554082 ,
GSM1554087 ,
GSM1554091 ,
GSM1554096 ,
GSM1554101 ,
GSM1554105 ,
GSM1554107 ,
GSM1554108 ,
GSM1554109 ,
GSM1554110 ,
GSM1554111 ,
GSM1554112 ,
GSM1554113 ,
GSM1554114 ,
GSM1554115 ,
GSM1554116 ,
GSM1554117 ,
GSM1554118 ,
GSM1554119 ,
GSM1554120 ,
GSM1554121 ,
GSM1554122 ,
GSM1554123 ,
GSM1554124 Series (1)
GSE63623 Concurrent DNA copy number alterations and mutations in genes related to maintenance of genome stability in uninvolved glandular tissue from breast cancer patients
Data table header descriptions ID PROBE_ID from .pos file
SEQUENCE CHROMOSOME RANGE_GB RANGE_START RANGE_END LENGTH SPOT_ID
Data table ID SEQUENCE CHROMOSOME RANGE_GB RANGE_START RANGE_END LENGTH SPOT_ID CHR01FS000010481
AGCCGGCCCGCCCGCCCGGGTCTGACCTGAGGAGAACTGTGCTCCGCCTT
chr1
NC_000001.10
10481
10530
50
chr1:10481-10530
CHR01FS000010551
TGCAGAGGACAACGCAGCTCCGCCCTCGCGGTGCTCTCCGGGTCTGTGCT
chr1
NC_000001.10
10551
10600
50
chr1:10551-10600
CHR01FS000010593
TCTGTGCTGAGGAGAACGCAACTCCGCCGTTGCAAAGGCGCGCCGCGCCG
chr1
NC_000001.10
10593
10642
50
chr1:10593-10642
CHR01FS000010807
CTAGCGCGTCGGGGTGGAGGCGTGGCGCAGGCGCAGAGAGGCGCGCCGCG
chr1
NC_000001.10
10807
10856
50
chr1:10807-10856
CHR01FS000010873
GACACATGCTACCGCGTCCAGGGGTGGAGGCGTGGCGCAGGCGCAGAGAG
chr1
NC_000001.10
10873
10922
50
chr1:10873-10922
CHR01FS000010991
GCAGAGACGCAAGCCTACGGGCGGGGGTTGGGGGGGCGTGTGTTGCAGGA
chr1
NC_000001.10
10991
11040
50
chr1:10991-11040
CHR01FS000011043
AAAGTCGCACGGCGCCGGGCTGGGGCGGGGGGAGGGTGGCGCCGTGCACG
chr1
NC_000001.10
11043
11092
50
chr1:11043-11092
CHR01FS000011097
GAAACTCACGTCACGGTGGCGCGGCGCAGAGACGGGTAGAACCTCAGTAA
chr1
NC_000001.10
11097
11146
50
chr1:11097-11146
CHR01FS000011247
GCAACTGCAGGGCTCTCTTGCTTAGAGTGGTGGCCAGCGCCCCCTGCTGG
chr1
NC_000001.10
11247
11296
50
chr1:11247-11296
CHR01FS000011351
GCTGGCAGCTAGGGACATTGCAGGGTCCTCTTGCTCAAGGTGTAGTGGCA
chr1
NC_000001.10
11351
11400
50
chr1:11351-11400
CHR01FS000011419
AGCTGGGGACACTGCCGGGCCCTCTTGCTCCAACAGTACTGGCGGATTAT
chr1
NC_000001.10
11419
11468
50
chr1:11419-11468
CHR01FS000012747
GGAGTGGCGTCGCCCCTAGGGCTCTACGGGGCCGGCGTCTCCTGTCTCCT
chr1
NC_000001.10
12747
12796
50
chr1:12747-12796
CHR01FS000012821
ACCCTCTTGATCTTCCCTGTGATGTCATCTGGAGCCCTGCTGCTTGCGGT
chr1
NC_000001.10
12821
12870
50
chr1:12821-12870
CHR01FS000013073
CTGGGTCGACAGACAGGGGCTGGAGAAGGGGAGAAGAGGAAAGTGAGGTT
chr1
NC_000001.10
13073
13122
50
chr1:13073-13122
CHR01FS000013233
GGCACCAAAGGGATTCTGCCAGCATAGTGCTCCTGGACCAGTGATACACC
chr1
NC_000001.10
13233
13282
50
chr1:13233-13282
CHR01FS000013291
TGTCCTGGACACGCTGTTGGCCTGGATCTGAGCCCTGGTGGAGGTCAAAG
chr1
NC_000001.10
13291
13340
50
chr1:13291-13340
CHR01FS000013943
GGGGGCTTGTCACCTCCCCCACCTTCTTCCTGAGTCATTCCTGCAGCCTT
chr1
NC_000001.10
13943
13992
50
chr1:13943-13992
CHR01FS000014225
CTGCAACAGCTGCCCCTGCTGACTGCCCTTCTCTCCTCCCTCTCATCCCA
chr1
NC_000001.10
14225
14274
50
chr1:14225-14274
CHR01FS000014569
TCTCCACACAGTGCTGGTTCCGTCACCCCCTCCCAAGGAAGTAGGTCTGA
chr1
NC_000001.10
14569
14618
50
chr1:14569-14618
CHR01FS000014701
ATTCCCAGTCGTCCTCGTCCTCCTCTGCCTGTGGCTGCTGCGGTGGCGGC
chr1
NC_000001.10
14701
14750
50
chr1:14701-14750
720147 94839 Kbytes .Supplementary file Size Download File type/resource GPL19457_100914_HG19_IS_CGH.gff.gz
124.4 Kb
(ftp) (http) GFF
GPL19457_100914_HG19_IS_CGH.ndf.gz
46.7 Mb
(ftp) (http) NDF
GPL19457_100914_HG19_IS_CGH.pos.gz
5.8 Mb
(ftp) (http) POS
GPL19457_100914_HG19_IS_CGH_HX3.ncd.gz
253 b
(ftp) (http) NCD
GPL19457_100914_HG19_IS_CGH_probe_locations.gff.gz
4.9 Mb
(ftp) (http) GFF
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