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Status
Public on Oct 07, 2014
Title
Bordetella pertussis Whole genome array
Technology type
spotted oligonucleotide
Distribution
non-commercial
Organism
Bordetella pertussis Manufacturer
TAG, Institut Pasteur de Lille
Manufacture protocol
Long oligonucleotide probes were designed on the sequences of the 3554 open reading frames (all coding CDS except transposases of IS elements) of B. pertussis Tohama I genome using OligoArray v2.1 [1]. Oligonucleotides were synthesized by Sigma-Aldrich and spotted on duplicat on Nexterion AL slides (Schott Nexterion) in 1x SciSpot-AM buffer (Scienion) using a Q-Array II spotter (Genetix).
Submission date
Oct 06, 2014
Last update date
Oct 07, 2014
Contact name
David Hot
E-mail(s)
david.hot@pasteur-lille.fr Organization name
Institut Pasteur de Lille
Department
Center for Infection and Immunity of Lille
Lab
Transcriptomics and Applied Genomics
Street address
1 rue du professeur Calmette
City
Lille
ZIP/Postal code
59000
Country
France
Samples (78)
GSM1519507 , GSM1519509 , GSM1519511 , GSM1519514 , GSM1519516 , GSM1519519
GSM2058580 ,
GSM2058581 ,
GSM2058582 ,
GSM2058583 ,
GSM2058584 ,
GSM2058585 ,
GSM2058586 ,
GSM2058587 ,
GSM2058588 ,
GSM2058589 ,
GSM2058590 ,
GSM2058591 ,
GSM2058592 ,
GSM2058593 ,
GSM2058594 ,
GSM2058595 ,
GSM2058596 ,
GSM2058597 ,
GSM2058598 ,
GSM2058599 ,
GSM2058600 ,
GSM2058601 ,
GSM2058602 ,
GSM2058603 ,
GSM2058604 ,
GSM2058605 ,
GSM2058606 ,
GSM2058607 ,
GSM2058608 ,
GSM2058609 ,
GSM2058610 ,
GSM2058611 ,
GSM2058612 ,
GSM2058613 ,
GSM2058614 ,
GSM2058615 ,
GSM2058616 ,
GSM2058617 ,
GSM2058618 ,
GSM2058619 ,
GSM2058620 ,
GSM2058621 ,
GSM2058622 ,
GSM2058623 ,
GSM2058624 ,
GSM2058625 ,
GSM2058626 ,
GSM2058627 ,
GSM2058628 ,
GSM2058629 ,
GSM2058630 ,
GSM2058631 ,
GSM2058632 ,
GSM2058633 ,
GSM2058634 ,
GSM2058635 ,
GSM2058636 ,
GSM2058637 ,
GSM2058638 ,
GSM2058639 ,
GSM2058640 ,
GSM2058641 ,
GSM2058642 ,
GSM2058643 ,
GSM2058644 ,
GSM2058645 ,
GSM3104659 ,
GSM3104660 ,
GSM3104661 ,
GSM3104662 ,
GSM3104663 ,
GSM3104664 Series (3)
GSE62088 A novel capsule-mediated virulence mechanism in a bacterial pathogen
GSE77754 The multifaceted RisA regulon of Bordetella pertussis
GSE113382 Signal transduction-dependent small regulatory RNA is involved in glutamate metabolism of the human pathogen Bordetella pertussis
Data table header descriptions ID Block_Row_Column
ProbeID Block Row Column SEQUENCE ORF ORF Name
Symbol Product GI NCBI_GeneID
Data table ID ProbeID Block Row Column SEQUENCE ORF Symbol Product GI NCBI_GeneID 1_2_1
BP0393_1
1
2
1
TGGCCATAGGCGGTATCGCGCGGGTCGGGCAGATCCAGCTGCTGCAACCGTTTCTTACGG
BP0393 putative membrane protein (Pseudogene)
2664410
2_2_1
BP0391_1
2
2
1
ATCCTGATCCCCTGCCACCGCATCATCGGCCATGACACATCGCTGACGGGGTTTGGCGGC
BP0391 ogt
methylated-D_--protein-cysteinemethyltransferase
33591617
2664528
3_2_1
BP0402_1
3
2
1
ATCCTGAACGTGATCGTCCTGACCTCGCTGATCGCCCTGCCGTTCGTGGGAGGCATGTGA
BP0402 gltS, gltC
putative sodium
33591625
2664393
4_2_1
BP0400_1
4
2
1
GCGCTGGACGGCCAGGATCTCATCGGTTACCTGATCGCCTATCCCTGGGACGCCGGCCTG
BP0400 putative acetyltransferase (pseudogene)
2664416
5_2_1
BP0411_2
5
2
1
CCGTACCGGCACCCGTTGCACCAACCTGTTCGCGGCCGCCCAGCAACTGG
BP0411 conserved hypothetical protein
33591632
2664285
6_2_1
BP0410_1
6
2
1
GGCCGAACAGGCTGAGAAATACCTCAAGCTGATCCTCGACCGGGCCGAAACCGCCGGGGT
BP0410 putative universal stress protein
33591631
2664383
7_2_1
BP0419_1
7
2
1
CTCGACGAGCTGGCGGACGAACCGTTCATCGGCTATTCGCGCACGCACGTGCCGGGCATG
BP0419 LysR-family transcriptio_l regulator
33591639
2664347
8_2_1
BP0418_1
8
2
1
GGTCGTGCTGGAGCTGTTTCACGAGCAGAACGGAATCAAGGCCACCCACGTGCCGTACAA
BP0418 putative exported protein
33591638
2667697
9_2_1
BP0428_1
9
2
1
CGGTGGAAGAGCACTACGAAATGATCGACCTGGCTGTCAAGCAGCAACCCGACGCCATCG
BP0428 putative GntR-family transcriptio_l regulator
33591647
2664405
10_2_1
BP0427_1
10
2
1
TCGAGGATGGCGAGATATCGGATGAATTGCTTACGCTTTCCGAATGCACGGCCGAACCCG
BP0427 putative exported protein
33591646
2664404
11_2_1
BP0436_1
11
2
1
ACCGCCACCCGACCCATTGCGACCATCACTACGCCTCGCAGACGGAATTCGGCAAGCCCC
BP0436 conserved hypothetical protein
33591654
2664799
12_2_1
BP0435_1
12
2
1
TGGGCAATCATCTCTACGGCGCCTTCGGCAGGGACTTCGTCACCCGCGACGGAAACCGGG
BP0435 putative dehydratase
33591653
2664450
1_3_1
BP0819_1
1
3
1
CGCCTTCGTGCAGCAGGACAAGCAGCGCTGGAAATCGTTCGTGGAAGCGGCCGGCATCAC
BP0819 putative exported protein
33591987
2664567
2_3_1
BP0818_1
2
3
1
CCAACCCCTATCGCACCACGTACCTGTTCGACGCACGCGATCCGTCCTGCTCGTCGCGGG
BP0818 conserved hypothetical protein
33591986
2664186
3_3_1
BP0827_1
3
3
1
CCTGATCAGCAAGCACGGCATCCTGATGGTGGAGTTCGCCAACGAGATGCAGGCGCATGC
BP0827 integral membrane component of multidrug effluxsystem
33591995
2664249
4_3_1
BP0826_1
4
3
1
GATGCCGTGGCGCAATCCGAGTCGGAGTCCTATACCAGCCTGGTCGCGCTCTACAAGGCC
BP0826 outer membrane component of multidrug effluxsystem
33591994
2664619
5_3_1
BP0836_1
5
3
1
CCCGGATGTCTCGTTGACGCTCTATGACCGCCAGCCGCTGCGCTGCGAACCATTTCGCGG
BP0836 putative exported protein
33592003
2664597
6_3_1
BP0835_1
6
3
1
ATGCCTCCGCCTCCATGGCCGTCTATGGCATTGCCTGCTACCTGATGTTGCGCACCTTGC
BP0835 putative membrane protein
33592002
2664563
7_3_1
BP0845_1
7
3
1
CACGTTCTACAACATGTTCGACGTCAAGCCGGTCGGCACGCACAAGATTGCCGTGTGCAC
BP0845 nuoE
respiratory-chain _DH dehydroge_se I, 24 kDasubunit
33592011
2667687
8_3_1
BP0844_1
8
3
1
CTACCGCCTGAAGATCCGGGCGCCCGGTTTTGCCCACTTGCAGTCGCTGGACGAAATGGC
BP0844 nuoD
respiratory-chain _DH dehydroge_se, 49 kDasubunit
33592010
2664628
7198 1011 Kbytes .Supplementary data files not provided
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