NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL19237 Query DataSets for GPL19237
Status Public on Apr 27, 2015
Title Agilent-027887 rek1 (Probe Name Version)
Technology type in situ oligonucleotide
Distribution commercial
Organism Mus musculus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Modification of previous hox tiling design to include extended hox regions.

Arrays of this design have barcodes that begin with 16027887 or 2527887.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Sep 26, 2014
Last update date Apr 27, 2015
Contact name Madelaine Gogol
Organization name Stowers Institute
Department Computational Biology Core
Street address 1000 E. 50th Street
City Kansas City
State/province MO
ZIP/Postal code 64110
Country USA
 
Samples (44) GSM1508859, GSM1508860, GSM1508861, GSM1508862, GSM1508863, GSM1508864 
Series (2)
GSE61584 Retinoids induce rapid dynamic changes in the non-coding RNAs and epigenetic profiles of murine Hox clusters (ChIP-chip)
GSE61590 Retinoids induce rapid dynamic changes in the non-coding RNAs and epigenetic profiles of murine Hox clusters
Relations
Alternative to GPL19214

Data table header descriptions
ID Agilent feature number
SEQUENCE Sequence
CHROM
RANGE_GB
RANGE_START
RANGE_END
RANGE_STRAND

Data table
ID SEQUENCE CHROM RANGE_GB RANGE_START RANGE_END RANGE_STRAND
r_chr15.102777561.C TGATCCCTGCCTTAAATTTGACCTCCCTAGCTCCAGCTGGGCGTTTGTCTTGACTCCAGT chr15 NC_000081.5 102777502 102777561 -
r_chr11.96116275.W TTACACCTTGAGTTGTAGCCAGAGTGTTTGCTGAGGACTGATCGGACTCTAGGAAACTCC chr11 NC_000077.5 96116275 96116334 +
r_chr2.74361173.W AAGTTGTGTTCTTAGTCCCTGCCTGAAAATCTACTCCCTTTAAATTCTATTTTTGAGTTT chr2 NC_000068.6 74361173 74361232 +
r_chr15.102765561.C CCGCGGGCGCCGCCCTGCCCCGCGCAGCTAGCAGCCCGCAGCTTGGCGCCCGCCCCTTGC chr15 NC_000081.5 102765502 102765561 -
r_krum_pbx2_chr17.34731256.W GGAGATGGAGCGCATGGTTAGCATCATCCATCGAAAGTTCAGCGCCATTCAGATGCAGCT chr17 NC_000083.5 34731256 34731315 +
r_shil_mll3_chr5.25002801.C ATGGGATTAAGCCATATTAGAAGTTTACTTCGATTCATTCCCATTTCACTGTTTGAAAAA chr5 NC_000071.5 25002742 25002801 -
r_chr2.74443692.C AGTCCAGCAAGCCAGTTCGGCCCTGGAATTTTCTGAACCTCCCTCCTGCTTTGAGATTAT chr2 NC_000068.6 74443633 74443692 -
r_cnwy_ino80d_chr1.63156521.W TAGTGTTACTACAGAATGTAGGTGGGCTAGAAAAGCAGTAATCCTACATCGAAGAATTTT chr1 NC_000067.5 63156521 63156580 +
r_chr15.102631245.C AATAAAATAAACTATGCACCTAGCCAACACAGGGAATGAATGGGGAGAAAATTGAGAAGA chr15 NC_000081.5 102631186 102631245 -
r_krum_phc1_chr6.122286393.C AATGAGTTTATGCTGTGCAGTATATACAGGTGCCGTTGGCTCTTGAGCTTCTGGTCACTT chr6 NC_000072.5 122286334 122286393 -
r_chr15.102667486.W ATTAATCTCTCTGATGCCTGTCTCCAGACTCTACCTGGTCAGGGAGTCTTCAGTCTAAAT chr15 NC_000081.5 102667486 102667545 +
r_krum_pknox2_chr9.36950491.W GTTCAAAATTGGAGGTTGAATTTCTGAAAGGTGAGGTGGGTGTGTAAATAAATACCAAGG chr9 NC_000075.5 36950491 36950550 +
r_chr11.96053893.W ATTGGGCTTTGGGAAGCAGTGAACAGACACCTTCCTCTTTTTTCCTTTCTCTATGTTTTC chr11 NC_000077.5 96053893 96053952 +
r_cntrl_chr10.80294081.W GCCCCTCATTGGCGCATTCTAGGCAGGGCCTCCAGCTCCTGACCACGCCCCTAGCTTCCT chr10 NC_000076.5 80294081 80294140 +
r_krum_bmi1_chr2.18600845.W CTTTGAGCAGTGAGCCCCAAGTGGGATTATAGAGATCATTTGCATTTCTTAGGTTGCAGT chr2 NC_000068.6 18600845 18600904 +
r_chr11.96118638.C CCCAAGTCCTGGGATTAAAGATGTGGACTGCTATGCTCAGCCCTGAGTATTTTCAAAGGT chr11 NC_000077.5 96118579 96118638 -
r_chr15.102753281.C TGCAGTTTTGGGAAATCTGGGCCGGTCTTTCTCCTCTGGGGAGTGATGGGGGCGGTATGG chr15 NC_000081.5 102753222 102753281 -
r_chr6.52098264.C TACCAGTACTGGGATTAAAAATGCATGCCGCCATGCCTGGCTTCTTATGCTATCTTTATA chr6 NC_000072.5 52098205 52098264 -
r_chr11.96136955.W TTTTCCCTGCAGGAAGTGTTTAATTCTGCATGTTTTCCTTTCCTTCCAACTAAAGGAGGT chr11 NC_000077.5 96136955 96137014 +
r_chr11.96033652.C TGAAGCAGAAAATAGAGCGTTATGGTGGCTGGGTGTTTGTGCCCAGCCACAGAATGGTTC chr11 NC_000077.5 96033593 96033652 -

Total number of rows: 102946

Table truncated, full table size 12269 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap