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Platform GPL19214 Query DataSets for GPL19214
Status Public on Apr 27, 2015
Title Agilent-027887 rek1
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Modification of previous hox tiling design to include extended hox regions.

Arrays of this design have barcodes that begin with 16027887 or 2527887.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Sep 19, 2014
Last update date Apr 27, 2015
Contact name Madelaine Gogol
Organization name Stowers Institute
Department Computational Biology Core
Street address 1000 E. 50th Street
City Kansas City
State/province MO
ZIP/Postal code 64110
Country USA
 
Samples (41) GSM1515763, GSM1515764, GSM1515765, GSM1515766, GSM1515767, GSM1515768 
Series (1)
GSE61585 Retinoids induce rapid dynamic changes in the non-coding RNAs and epigenetic profiles of murine Hox clusters (tiling)
Relations
Alternative to GPL19237

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
CONTROL_TYPE Control type
REFSEQ RefSeqAccession
GB_ACC GenBankAccession
LOCUSLINK_ID LocuslinkID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
TIGR_ID TIGRID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence
SPOT_ID Spot identifier

Data table
ID COL ROW NAME CONTROL_TYPE REFSEQ GB_ACC LOCUSLINK_ID GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID TIGR_ID ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GO_ID SEQUENCE SPOT_ID
1 264 398 GE_BrightCorner pos CONTROL
2 264 396 DarkCorner pos CONTROL
3 264 394 DarkCorner pos CONTROL
4 264 392 r_chr15.102777561.C FALSE unmapped TGATCCCTGCCTTAAATTTGACCTCCCTAGCTCCAGCTGGGCGTTTGTCTTGACTCCAGT
5 264 390 r_chr11.96116275.W FALSE unmapped TTACACCTTGAGTTGTAGCCAGAGTGTTTGCTGAGGACTGATCGGACTCTAGGAAACTCC
6 264 388 r_chr2.74361173.W FALSE unmapped AAGTTGTGTTCTTAGTCCCTGCCTGAAAATCTACTCCCTTTAAATTCTATTTTTGAGTTT
7 264 386 r_chr15.102765561.C FALSE unmapped CCGCGGGCGCCGCCCTGCCCCGCGCAGCTAGCAGCCCGCAGCTTGGCGCCCGCCCCTTGC
8 264 384 r_krum_pbx2_chr17.34731256.W FALSE unmapped GGAGATGGAGCGCATGGTTAGCATCATCCATCGAAAGTTCAGCGCCATTCAGATGCAGCT
9 264 382 r_shil_mll3_chr5.25002801.C FALSE unmapped ATGGGATTAAGCCATATTAGAAGTTTACTTCGATTCATTCCCATTTCACTGTTTGAAAAA
10 264 380 r_chr2.74443692.C FALSE unmapped AGTCCAGCAAGCCAGTTCGGCCCTGGAATTTTCTGAACCTCCCTCCTGCTTTGAGATTAT
11 264 378 r_cnwy_ino80d_chr1.63156521.W FALSE unmapped TAGTGTTACTACAGAATGTAGGTGGGCTAGAAAAGCAGTAATCCTACATCGAAGAATTTT
12 264 376 r_chr15.102631245.C FALSE unmapped AATAAAATAAACTATGCACCTAGCCAACACAGGGAATGAATGGGGAGAAAATTGAGAAGA
13 264 374 r_krum_phc1_chr6.122286393.C FALSE unmapped AATGAGTTTATGCTGTGCAGTATATACAGGTGCCGTTGGCTCTTGAGCTTCTGGTCACTT
14 264 372 r_chr15.102667486.W FALSE unmapped ATTAATCTCTCTGATGCCTGTCTCCAGACTCTACCTGGTCAGGGAGTCTTCAGTCTAAAT
15 264 370 r_krum_pknox2_chr9.36950491.W FALSE unmapped GTTCAAAATTGGAGGTTGAATTTCTGAAAGGTGAGGTGGGTGTGTAAATAAATACCAAGG
16 264 368 r_chr11.96053893.W FALSE unmapped ATTGGGCTTTGGGAAGCAGTGAACAGACACCTTCCTCTTTTTTCCTTTCTCTATGTTTTC
17 264 366 r_cntrl_chr10.80294081.W FALSE unmapped GCCCCTCATTGGCGCATTCTAGGCAGGGCCTCCAGCTCCTGACCACGCCCCTAGCTTCCT
18 264 364 r_krum_bmi1_chr2.18600845.W FALSE unmapped CTTTGAGCAGTGAGCCCCAAGTGGGATTATAGAGATCATTTGCATTTCTTAGGTTGCAGT
19 264 362 r_chr11.96118638.C FALSE unmapped CCCAAGTCCTGGGATTAAAGATGTGGACTGCTATGCTCAGCCCTGAGTATTTTCAAAGGT
20 264 360 r_chr15.102753281.C FALSE unmapped TGCAGTTTTGGGAAATCTGGGCCGGTCTTTCTCCTCTGGGGAGTGATGGGGGCGGTATGG

Total number of rows: 105072

Table truncated, full table size 13116 Kbytes.




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