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Platform GPL19026 Query DataSets for GPL19026
Status Public on Jul 05, 2017
Title Agilent-038464 CaSC5314_SnpCgh_v1_Santos 033626
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Candida albicans SC5314
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16038464 or 2538464.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Jul 31, 2014
Last update date Jul 18, 2017
Contact name Tobias Weil
E-mail(s) tobias.weil@fmach.it
Organization name Fondazione Edmund Mach
Street address Via E. Mach, 1
City S. Michele all'Adige (TN)
ZIP/Postal code 38010
Country Italy
 
Samples (3) GSM1465295, GSM1465296, GSM1465297
Series (2)
GSE60120 Mistranslation accelerates the evolution of antifungal drug resistance in Candida albicans [CGH]
GSE60122 Mistranslation accelerates the evolution of antifungal drug resistance in Candida albicans

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
PROBE_NAME
CONTROL_TYPE Control type
ORF
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
SPOT_ID

Data table
ID COL ROW PROBE_NAME CONTROL_TYPE ORF CHROMOSOMAL_LOCATION DESCRIPTION SPOT_ID
1 192 328 DarkCorner pos control
2 192 326 DarkCorner pos control
3 192 324 DarkCorner pos control
4 192 322 SNP_Ca_08_000450806_T FALSE Ca21chrR_C_albicans_SC5314_450806_450839 SNP_Ca_08_000450806_T
5 192 320 SNP_Ca_01_001090843_G FALSE Ca21chr1_C_albicans_SC5314_1090843_1090873 SNP_Ca_01_001090843_G
6 192 318 SNP_Ca_03_000207664_C FALSE Ca21chr3_C_albicans_SC5314_207664_207694 SNP_Ca_03_000207664_C
7 192 316 CGH_Ca_06_000372000 FALSE Ca21chrCGH_C_albicans_SC5314__ CGH_Ca_06_000372000
8 192 314 SNP_Ca_03_000240653_T FALSE CaO19.3154 Ca21chr3_C_albicans_SC5314_240653_240690 Ortholog(s) have mitochondrion localization;orf_classification=Uncharacterized;Alias=orf19.10664,IPF312.3,IPF15139.2,Contig4-2595_0002,orf6.1661,orf6.2694,CA0624,CaO19.3154,IPF312,CAWG_02451 SNP_Ca_03_000240653_T
9 192 312 SNP_Ca_01_002973396_A FALSE Ca21chr1_C_albicans_SC5314_2973396_2973428 SNP_Ca_01_002973396_A
10 192 310 CGH_Ca_01_003125500 FALSE Ca21chrCGH_C_albicans_SC5314__ CGH_Ca_01_003125500
11 192 308 SNP_Ca_04_000718920_T FALSE Ca21chr4_C_albicans_SC5314_718920_718953 SNP_Ca_04_000718920_T
12 192 306 SNP_Ca_01_001994507_T FALSE Ca21chr1_C_albicans_SC5314_1994507_1994538 SNP_Ca_01_001994507_T
13 192 304 SNP_Ca_02_001069583_C FALSE Ca21chr2_C_albicans_SC5314_1069583_1069617 SNP_Ca_02_001069583_C
14 192 302 CGH_Ca_01_000321500 FALSE Ca21chrCGH_C_albicans_SC5314__ CGH_Ca_01_000321500
15 192 300 CGH_Ca_02_000108500 FALSE Ca21chrCGH_C_albicans_SC5314__ CGH_Ca_02_000108500
16 192 298 SNP_Ca_04_000737138_T FALSE Ca21chr4_C_albicans_SC5314_737138_737175 SNP_Ca_04_000737138_T
17 192 296 SNP_Ca_07_000785647_G FALSE Ca21chr7_C_albicans_SC5314_785647_785677 SNP_Ca_07_000785647_G
18 192 294 CGH_Ca_02_001674000 FALSE Ca21chrCGH_C_albicans_SC5314__ CGH_Ca_02_001674000
19 192 292 SNP_Ca_06_000727505_G FALSE CaO19.5704 Ca21chr6_C_albicans_SC5314_727505_727536 Ortholog(s) have rR binding activity, role in mitochondrial R processing, mitochondrial genome maintence, rR metabolic process and mitochondrion localization;orf_classification=Uncharacterized;Alias=orf19.13127,IPF17898.2,IPF8477.1,Contig4-2522_0007,orf6.151,orf6.4634,CA2655,CaO19.5704,IPF8477,CAWG_05026 SNP_Ca_06_000727505_G
20 192 290 SNP_Ca_03_000596049_G FALSE CaO19.267 Ca21chr3_C_albicans_SC5314_596049_596078 Protein required for normal filamentous growth; mR binds to She3p;orf_classification=Verified;Alias=orf19.7899,IPF19341.2,IPF11460.2,orf6.2362,CA1060,CaO19.267,IPF11460,CAWG_02596 SNP_Ca_03_000596049_G

Total number of rows: 62976

Table truncated, full table size 11270 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL19026_geo_format.TXT.gz 652.7 Kb (ftp)(http) TXT

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