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Platform GPL18543 Query DataSets for GPL18543
Status Public on Apr 08, 2016
Title Agilent Solea senegalensis Aquagenet array (Feature Number version)
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Solea senegalensis
Manufacturer Agilent
Manufacture protocol See manufacturer's website (http://www.agilent.com/)
 
Description SoleaAquagenet
 
Submission date Apr 08, 2014
Last update date Apr 08, 2016
Contact name Rocio Bautista
E-mail(s) rociobm@uma.es
Phone 0034951952789
Organization name Universidad de Malaga
Department Edificio de Bioinnovacion
Lab Plataforma Andaluza de Bioinformatica
Street address C/ Severo Ochoa, 34. Parque Tecnologico
City Campanillas
State/province Malaga
ZIP/Postal code 29590
Country Spain
 
Samples (8) GSM1376686, GSM1376687, GSM1376688, GSM1376689, GSM1376690, GSM1376691 
Series (1)
GSE57173 Transcriptomic responses of early developmental larval stages exposed to a hypoosmotic environment in the flatfish Senegalese solea

Data table header descriptions
ID Agilent Feature Number
COL Column
ROW Row
NAME Name
SPOT_ID Spot identifier
CONTROL_TYPE Control type
UNIGENE_ID Unigene ID database solea v3.0 (http://www.juntadeandalucia.es/agriculturaypesca/ifapa/soleadb_ifapa)
CHROMOSOMAL_LOCATION Chromosomal location
DESCRIPTION Description of genes
SEQUENCE Oligonucleotide sequence

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE UNIGENE_ID CHROMOSOMAL_LOCATION DESCRIPTION SEQUENCE
1 266 170 GE_BrightCorner GE_BrightCorner pos
2 266 168 DarkCorner DarkCorner pos
3 266 166 DarkCorner DarkCorner pos
4 266 164 DarkCorner DarkCorner pos
5 266 162 DarkCorner DarkCorner pos
6 266 160 DarkCorner DarkCorner pos
7 266 158 DarkCorner DarkCorner pos
8 266 156 DarkCorner DarkCorner pos
9 266 154 DarkCorner DarkCorner pos
10 266 152 DarkCorner DarkCorner pos
11 266 150 DarkCorner DarkCorner pos
12 266 148 Contig47773 Contig47773 FALSE solea_v3.0_unigene47773 unmapped PREDICTED: similar to TBC1 domain family, member 16 isoform 3 n=1 Tax=Canis lupus familiaris RepID=UPI00005A1A10 TAGATAAAGATGTGGTGAGAACAGACCGCAGCAACCACTTCTTCAGGGGAGAGAATAATC
13 266 146 Contig54495 Contig54495 FALSE solea_v3.0_unigene54495 unmapped 40S ribosomal protein S19 n=10 Tax=Euteleostei RepID=RS19_PAGMA TTGAGGTTGCCGAACACCATTTTTATATCTTTGGGTTGCTGTTGAGGCGAGAGTGAAAAC
14 266 144 Contig40173 Contig40173 FALSE solea_v3.0_unigene40173 unmapped PREDICTED: leucine rich repeat containing 8 family, member D n=1 Tax=Oryctolagus cuniculus RepID=UPI0001C6538E AGCTGTCAAGTCCCTCACCTTCGATTTTTTACCTTTTGTATTCAGTATACCTTCAGTCTA
15 266 142 Contig11214 Contig11214 FALSE solea_v3.0_unigene11214 unmapped GATTCTGATTAAACGACTTGTAGAAATGAATGCAACGACTGGAAACACTGCAAGACCTGC
16 266 140 Contig10733 Contig10733 FALSE solea_v3.0_unigene10733 unmapped Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 13 n=5 Tax=Euteleostei RepID=B5DGU8_SALSA GCAACCTGTAAATTACACATTTTACAAATAAACAACATCCTCACCACACGGACTGAAAAC
17 266 138 gr1_c114165 gr1_c114165 FALSE solea_v3.0_unigene154942 unmapped SLC16A3, MCT4; solute carrier family 16, member 3 (monocarboxylic acid transporter 4); K08180 MFS transporter, MCP family, solute carrier family 16 (monocarboxylic acid transporters), member 3 GACTGACTACGCGGGTCTCGTGATCTTCTGCATATTCTTCGGGATATCGTACGGCATGGT
18 266 136 Contig58028 Contig58028 FALSE solea_v3.0_unigene58028 unmapped MGC152651, mtmft; zgc:152651 (EC:2.1.2.9); K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9] AAATGTCACGTTTCATTATCAGATCCAAACAGAAAACCTGTCCCCGGCTCAGTGACCTAC
19 266 134 Contig52491 Contig52491 FALSE solea_v3.0_unigene52491 unmapped Pob n=2 Tax=Euteleostei RepID=B5XG85_SALSA TGGACTGTTAGCGCCTTCTATTTCCTCACTGACGCCACACTTCAATAAATGTGCCAATCA
20 266 132 gr1_c118028 gr1_c118028 FALSE solea_v3.0_unigene158027 unmapped PREDICTED: lisH domain-containing protein ARMC9-like n=1 Tax=Sus scrofa RepID=UPI0001E888CC AGACACATCTCTTTCCACTTCTGCTTGCCCATACATTGGTAGTGAAACGGCATACAAGAC

Total number of rows: 45220

Table truncated, full table size 8145 Kbytes.




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