GEO Accession viewer

GSE62273	Gene expression profiling of Tg(14xUAS:GFP-EWSR1-ERG) x Et(E1b:Gal4-VP16)s1101t, Tg(UAS:Kaede) s1999t zebrafish embryos at 3 days post fertilization
GSE63225	G9a and ZNF644 physically associate to suppress progenitor gene expression during neurogenesis
GSE64125	Zebrafish foxc1a is required for appendage specific neural circuit development
GSE64570	Gene expression profiling of zebrafish embryos at 1 hour post injection of PAMPs
GSE65751	Lymphatic vessels arise from a niche of multipotent angioblasts within the floor of the cardinal vein
GSE66688	Spatial reconstruction of single-cell gene expression
GSE67092	Transcriptome profiling from the brain of male and female zebrafish
GSE69219	Cyp27c1 red-shifts the spectral sensitivity of photoreceptors by converting vitamin A1 into A2
GSE72322	Identifying molecular mechanisms of neural crest (NC) EMT and cell migration
GSE72682	Transcriptome analysis of metronidazole-induced sensory neuron ablation in zebrafish
GSE74196	Genetic and Acquired Lysosomal Disorders Drive Susceptibility to Tuberculosis by Compromising Macrophage Migration
GSE74231	Enhancers reside in a unique epigenetic environment during early zebrafish development [ChIP-seq & ATAC-seq]
GSE74415	Small RNA and mRNA expression profiling during zebrafish caudal fin regeneration
GSE74616	Enhancers reside in a unique epigenetic environment during early zebrafish development [4C-seq]
GSE74617	Enhancers reside in a unique epigenetic environment during early zebrafish development
GSE75351	A zebrafish melanoma model reveals emergence of neural crest identity during melanoma initiation [ATAC-Seq]
GSE75353	A zebrafish melanoma model reveals emergence of neural crest identity during melanoma initiation [zebrafish ChIP-seq]
GSE75355	A zebrafish melanoma model reveals emergence of neural crest identity during melanoma initiation [zebrafish RNA-Seq]
GSE75356	A zebrafish melanoma model reveals emergence of neural crest identity during melanoma initiation
GSE75734	Comparative analyses of super-enhancers reveal conserved elements in vertebrate genomes
GSE76740	Abundant DNA 6mA methylation during early embryogenesis of zebrafish
GSE77137	An evolutionarily conserved function of the pre-mRNA splicing regulator TNPO3 for T cell development
GSE77480	Forward genetic screens in zebrafish identify novel molecular pathways regulating early T cell development
GSE77755	Marker gene/pathway discovery for polystyrene particle toxicity in zebrafish larvae
GSE77921	SATB2 induces transcriptional programs in melanoma that lead to metastatic behavior [ChIP-Seq]
GSE77922	SATB2 induces transcriptional programs in melanoma that lead to metastatic behavior [RNA-Seq]
GSE77923	SATB2 induces transcriptional programs in melanoma that lead to metastatic behavior
GSE78194	Macrophages Mediate the Repair of Brain Vascular Rupture through Direct Physical Adhesion and Mechanical Traction
GSE79213	The functions of m6A and Ythdf2 during zebrafish early development
GSE79585	Analysis of gene expression during the early stages of zebrafish heart valve development
GSE80003	FOXN3 regulates hepatic glucose utilization
GSE80134	Tet-mediated DNA hydroxymethylation regulates retinal neurogenesis in zebrafish via cell-extrinsic signaling pathways
GSE80221	Response to low-dose cortisol treatment in zebrafish embryos [larvae]
GSE80260	Cortisol-treated zebrafish embryos develop into pro-inflammatory adults with aberrant immune gene regulation [adults]
GSE80286	Cortisol-treated zebrafish embryos develop into pro-inflammatory adults with aberrant immune gene regulation
GSE81007	Dietary intake influences fertility and offspring development in zebrafish.
GSE81627	Next Generation Sequencing Facilitates Quantitative Analysis of Tg(hsp70:dn-xBrg1) and wild-type sibling hearts Transcriptomes
GSE81913	Macrophage Epithelial Reprogramming Underlies Mycobacterial Granuloma Formation and Promotes Infection
GSE82200	Intestinal microbiome adjusts the innate immune setpoint during colonization through negative regulation of MyD88
GSE83343	Differential gene expression of zebrafish melanocytes and melanomas [RNA-seq]
GSE83400	GDF6-induced BMP signaling reawakens a neural crest identity in melanoma to prevent cell death and differentiation
GSE84436	Expression profiling identifies Sertoli and Leydig cell genes as Fsh targets in adult zebrafish testis
GSE84600	ChIP-seq analysis of Rad21 binding during genome activation
GSE84602	Cohesin facilitates zygotic genome activation in Zebrafish
GSE84736	Differential DNA methylation at conserved non-genic elements and transgenerational inheritance following developmental exposure to mono(2-ethylhexyl) phthalate and 5-azacytidine in zebrafish
GSE85004	High-throughput sequencing analysis identify miRNAs in 7dpf F1-zebrafish under β-diketone antibiotics exposure to F0-zebrafish
GSE85554	Characterization of genetic loss-of-function of Fus in zebrafish
GSE85713	Profiling DNA Replication Timing in Zebrafish Embryos Reveals Dynamic Regulation During Development
GSE86548	Functional and spatial segregation of embryo-larval and adult globin genes in Danio rerio major globin gene locus shows possible way of generation of structural-functional genomic domains in eukaryotic genome
GSE86571	Proliferation-independent regulation of organ size by Notch signaling
GSE86921	Zebrafish microglia transcriptome
GSE86944	Antagonistic regulation of spermatogonial differentiation in zebrafish (Danio rerio) by Igf3 and Amh
GSE87596	Comparison of tbx5-positive ventricular cardiomyoctes with the rest of ventricular cardiomyocytes from adult zebrafish hearts
GSE88776	Polysome-seq in zebrafish early embryonic development
GSE89144	Mercury-Induced Epigenetic Transgenerational Inheritance of Abnormal Neurobehavior is Correlated with Sperm Epimutations in Zebrafish
GSE89245	RNAseq of wild type and maternal-zygotic Nanog mutant (MZnanog) zebrafish embryos
GSE89319	RNAseq of wild type and Toddler mutant zebrafish embryos
GSE89655	Transcriptomics analysis of gene expressions, m6A enrichment levels and ythdf2 binding targets in control and mettl3 or ythdf2 morphants zebrafish embryos
GSE89670	The Biotagging toolkit for analysis of specific cell populations in zebrafish reveals gene regulatory logic encoded in the nuclear transcriptome
GSE89808	Sorting zebrafish thrombocyte lineage cells with a Cd41 monoclonal antibody enriches hematopoietic stem cell activity
GSE90143	RNA-seq of zebrafish melanoma cells after metastatic dissemination
GSE90446	Microbiota regulate intestinal epithelial gene expression by suppressing the transcription factor Hepatocyte nuclear factor 4 alpha (zebrafish RNA-seq)
GSE90462	Microbiota regulate intestinal epithelial gene expression by suppressing the transcription factor Hepatocyte nuclear factor 4 alpha
GSE90595	Zebrafish heart regeneration
GSE90637	Differential Roles of the Maternal and Zygotic FGF in Neural Induction in the Zebrafish Embryo
GSE90735	Sodium arsenite effects on DNA methylation in zebrafish embryos.
GSE92440	Identification of Transcripts Involved in Neural Tube Closure Using RNA-sequencing
GSE92542	CXCL8 and CXCR1 Remodel the Vascular Niche to Promote Hematopoietic Stem and Progenitor Cell Colonization and Engraftment [wt vs kdrl:cxcr1]
GSE92543	CXCL8 and CXCR1 Remodel the Vascular Niche to Promote Hematopoietic Stem and Progenitor Cell Colonization and Engraftment
GSE92559	Transcriptomic Analysis of Adult Zebrafish Inner Ear Hair Cells
GSE92754	TP53 modulates oxidative stress in Gata1+ erythroid cells
GSE93299	RNA-seq of zebrafish ZMEL1 melanoma cells versus BRAF inhibitor resistant ZMELR1 melanoma cells
GSE93818	Distinct roles for matrix metalloproteinases 2 and 9 in hematopoietic stem cell emergence, migration and niche colonization
GSE95030	‘Placeholder’ nucleosomes underlie germline-to-embryo DNA methylation reprogramming [ChIP-Seq]
GSE95031	‘Placeholder’ nucleosomes underlie germline-to-embryo DNA methylation reprogramming [RNA-Seq]
GSE95032	‘Placeholder’ nucleosomes underlie germline-to-embryo DNA methylation reprogramming [RRBS]
GSE95033	‘Placeholder’ nucleosomes underlie germline-to-embryo DNA methylation reprogramming
GSE95808	Transcriptional profiling of the zebrafish proximal tubule
GSE95813	A chemical screen in zebrafish embryonic cells establishes that Akt activation is required for neural crest development [ATAC-seq]
GSE95814	A chemical screen in zebrafish embryonic cells establishes that Akt activation is required for neural crest development [RNA-seq]
GSE95815	A chemical screen in zebrafish embryonic cells establishes that Akt activation is required for neural crest development
GSE96519	Transcriptome of the distal late segment of the zebrafish mesonephros
GSE96575	Differential gene expression in MZudu v. WT zebrafish gastrulae
GSE96576	Identification of Gon4l-associated genomic regions by DamID-seq
GSE97016	Genome-wide transcriptional responses to nucleotides in zebrafish (Danio rerio) embryos
GSE97267	Evolutionary recruitment of flexible Esrp-dependent splicing programs into diverse embryonic morphogenetic processes
GSE97573	EpCAM controls morphogenetic programs during zebrafish pronephros development
GSE98094	Whole Retina RNAseq after injury and Valproic acid (VPA) treatment in zebrafish
GSE98519	Identification of Lef1-dependent genes in zebrafish and mouse hypothalamus
GSE98647	Transgenerational inheritance of impaired larval T cell development in zebrafish
GSE98648	Structural basis of epigenetic protection of mouse lymphoid progenitor cells by Dnmt1
GSE98707	A conserved RNA regulates miRNA turnover and animal behavior through a near-perfect miRNA site
GSE98741	Early life exposure to low levels of AHR agonist 3,3’,4,4’,5-pentachlorobiphenyl (PCB126) reprograms gene expression in adult brain.
GSE98857	Epigenetical regulation in zebrafish heart regeneration
GSE99308	Transcriptomic Analysis for Differentially Expressed Genes in Ovarian Follicle Activation and Puberty Onset in the Zebrafish
GSE99382	Zebrafish zic2 controls formation of periocular neural crest and choroid fissure morphogenesis
GSE100821	Primary spinal OPC culture system from adult zebrafish to study oligodendrocyte differentiation in vitro
GSE101199	postnb lineage traced cells at 7 and 60 days post cryoinjury (dpi) during adult zebrafish cardiac ventricle regeneration
GSE101200	Comparison of the expression profiles of kdrl:mCherry-positive cells in injured versus uninjured zebrafish cardiac ventricle and analysis of the expression prolife of postnb:citrin-positive cells upon injury compared to the rest of cardiac cells.
GSE101204	Comparison of the expression profile of GFP-positive cells from Tg(-6.8wt1a:EGFP) with the rest of the cells in adult zebrafish cardiac ventricles
GSE101390	Zebrafish Rfx4 controls dorsal and ventral midline formation in the neural tube
GSE101693	RNA-sequencing of Adult Zebrafish Inner Ear Hair Cells
GSE101843	High resolution annotation of Zebrafish transcriptome using long-read sequencing
GSE102063	Whole Retina RNAseq after injury and Cyclopamine(C) treatment in zebrafish
GSE102424	Sequencing of Danio rerio brain for 2 age groups after physical exercise
GSE102426	Sequencing of Danio rerio brain from tert mutants and controls
GSE102427	Sequencing of Danio rerio liver for 2 age groups after physical exercise
GSE102429	Sequencing of Danio rerio liver from tert mutants and controls
GSE102430	Sequencing of Danio rerio muscle for 2 age groups after physical exercise
GSE102431	Sequencing of Danio rerio muscle from tert mutants and controls
GSE102432	Sequencing of Danio rerio skin for 2 age groups after physical exercise
GSE102434	Sequencing of Danio rerio skin from wildtype and two tert mutant phenotypes (JenAge)
GSE102766	Gene expression profiling of the Tlr2 mutant of zebrafish embryos at 4 days post infection of M. marinum
GSE103134	Sequencing of Danio rerio brain from wildtype and Tg-microRNA-sponge animals
GSE103692	Distinct, OR-specific subsets of axon guidance molecules govern early olfactory map formation
GSE103801	Sequencing of Danio rerio embryo from wildtype and microRNA treated animals
GSE103913	High-throughput deep sequence of zebrafish wild-type and ezh2 mutant embryos
GSE104221	Integrative analysis of transcriptional and DNA methylation changes associated with PCB126 exposure in adult zebrafish (Danio rerio)
GSE105013	Systemic gain and loss of chromatin architecture throughout zebrafish development [Hi-C]
GSE105014	Systemic gain and loss of chromatin architecture throughout zebrafish development [4C]
GSE105015	Systemic Loss and Gain of Chromatin Architecture throughout Zebrafish Development.
GSE106121	Simultaneous lineage tracing and cell type identification using CRISPR/Cas9 induced genetic scars
GSE106342	RNA-sequencing based linkage analysis identifies supt16h as a target gene from a forward genetic screen
GSE106371	Transcriptome of zebrafish neurohypophyseal astroglia (pituicytes)
GSE106430	Functional genomic and transcriptomic analysis of amphioxus and the origin of vertebrate genomic traits [RNA-Seq]
GSE106431	Functional genomic and transcriptomic analysis of amphioxus and the origin of vertebrate genomic traits
GSE106466	Single-cell RNAseq (SMART-seq2) of wild-type (TLAB) and MZoep (tz57) zebrafish embryos at 50% epiboly stage
GSE106587	Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis
GSE106676	From pioneer to repressor: Bimodal foxd3 activity dynamically remodels neural crest regulatory landscape in vivo
GSE106677	Massively parallel reporter assay of 3’UTR sequences identifies in vivo rules for mRNA degradation
GSE106884	Timeseries of small RNA and mRNA expression during zebrafish heart regeneration
GSE106938	Age-related Islet Inflammation Marks the Proliferative Decline of Pancreatic Beta-cells in Zebrafish
GSE106985	The CCCH-type zinc finger transcription factor Zc3h8 protects hepatocytes from degeneration by repressing the inflammatory response in zebrafish.
GSE107547	Glucocorticoid deficiency causes transcriptional and post-transcriptional reprogramming of glutamine metabolism
GSE108240	Mutations in Bcl9 and Pygo genes cause congenital heart defects by tissue-specific perturbation of Wnt/β-catenin signaling
GSE108493	RNA seq analysis of regenerating hearts from three models of successful cardiac regeneration
GSE108924	Transcriptome analysis of wild-type and maternal ybx1 mutant zebrafish embryos during early development
GSE109219	The evolutionary emergence of the rac3b/rfng/sgca regulatory cluster refined mechanisms for hindbrain boundaries formation
GSE109410	Pou5f3, SoxB1 and Nanog remodel chromatin on High Nucleosome Affinity Regions at Zygotic Genome Activation.
GSE109581	tp53 deficiency causes a wide tumor spectrum and elevates embryonal rhabdomyosarcoma metastasis in zebrafish
GSE109854	Long non-coding RNAs have age-dependent diurnal expression that correlates with age-related changes in genome-wide facultative heterochromatin (ChIP-Seq data set)
GSE109855	Long non-coding RNAs have age-dependent diurnal expression that correlates with age-related changes in genome-wide facultative heterochromatin (RNA-Seq data set)
GSE109856	Long non-coding RNAs have age-dependent diurnal expression that correlates with age-related changes in genome-wide facultative heterochromatin
GSE109978	Hrg1 promotes heme-iron recycling during erythrophagocytosis in zebrafish kidne
GSE110582	Whole genome mapping of DNA G-quadruplexes in multiple species by G4-seq
GSE111280	Whole transcriptomic analysis of zebrafish embryos of dyrk1aakrb1, dyrk1aa knock out mutant and Wild Type (WT) (+/+) in the background of Tg(kdrl:egfp)
GSE111528	Tissue damage signaling is essential for protective neutrophil recruitment to microbial infection in zebrafish (Danio rerio)
GSE113169	A Zebrafish Acromegaly Model Elevates DNA Damage and Impairs DNA Repair Pathways
GSE115263	RNA-Seq of FACS-sorted cardiomyocytes
GSE115381	Transcriptome analysis of wt1b:eGFP positive macrophages in the regenerating zebrafish heart
GSE115398	PGC1a and Exercise Adaptations in Zebrafish
GSE115640	Tbx5 paralogues during zebrafish development
GSE115719	Transcriptome analysis of zebrafish wildtype adult brain and rb1-embryonal brain tumors by RNA-Seq
GSE115720	Transcriptome analysis of wildtype and rb1-/- zebrafish larval head tissue by RNA-Seq
GSE115721	Transcriptome analysis of zebrafish wildtype adult brain and rb1-embryonal brain tumors, and wildtype and rb1-/- zebrafish larval head tissue, by RNA-Seq
GSE116215	Zebrafish control and csf1r mutant microglia transcriptomes
GSE116216	Zebrafish control and csf1r mutant brain transcriptomes
GSE116217	Zebrafish control and csf1r mutant microglia and brain transcriptomes
GSE116358	Pericentromeric hypomethylation elicits an interferon response in an animal model of ICF syndrome [ssRNA-seq]
GSE116359	Pericentromeric hypomethylation elicits an interferon response in an animal model of ICF syndrome [dsRNA-seq]
GSE116360	Pericentromeric hypomethylation elicits an interferon response in an animal model of ICF syndrome
GSE116611	Endocrine and local signaling interact to regulate spermatogenesis in zebrafish: Follicle-stimulating hormone, retinoic acid and androgens
GSE117807	Sequencing of Danio rerio brain for 5 age groups
GSE117820	Sequencing of Danio rerio skin for 5 age groups
GSE118000	Transcriptomic analysis of isolated zebrafish podocytes and endothelial cells exposed to human APOL1 mRNA
GSE118509	Gene expression analysis of wt1b-positive cardiac macrophages
GSE119070	Loss of maternal and zygotic ezh2 reveals the function of Polycomb repression in maintenance of gene expression domain after the body plan is established in zebrafish
GSE120253	Cortisol acting through the glucocorticoid receptor is not responsible for exercise-enhanced growth but does affect the white skeletal muscle transcriptome in zebrafish (Danio rerio)
GSE120275	Genetic control of cellular morphogenesis in Müller glia
GSE120289	Profiles analysis reveals circRNAs involving zebrafish physiological development
GSE120509	Multi-dimensional transcriptome analysis of an intact hematopoietic organ for HSPC expansion [RNA-seq]
GSE120531	Identification and functional analysis of yap1b: a new Yap family member in teleosts that evolved a divergent transcriptional activation domain.
GSE120581	Multi-dimensional transcriptome analysis of an intact hematopoietic organ for HSPC expansion
GSE120632	Regulation of CpG methylation by the Glucocorticoid Receptor in zebrafish
GSE120643	Transcriptomics analysis of gene expression in wide type, ybx1 MO, pabpc1a MO zebrafish embryo sample.
GSE120645	m5C profiles in zebrafish embryo sample.
GSE120646	Ybx1 binding sites and Ybx1-binding m5C sites in zebrafish embryo sample.
GSE120724	Dynamic landscapes and regulome of mRNA structure during zebrafish early embryogenesis
GSE121404	The aryl hydrocarbon receptor pathway defines the time frame for restorative neurogenesis
GSE121973	Profiling the endothelial translatome in vivo using ‘AngioTag’ zebrafish
GSE121988	5hmC (48hpf WT dissected heart) 5hMe-Bead-Integrated Click-seq (5hMe-BIC-seq)
GSE121989	RNA Sequencing of sibling and TET2/3 DKO zebrafish
GSE121991	TETs Regulate Proepicardial Cell Migration through Extracellular Matrix Organization during Zebrafish Cardiogenesis
GSE122208	Characterization of Transcriptomic Profile in Early Zebrafish PGCs by Single Cell Sequencing
GSE122643	Glucocorticoids inhibit macrophage differentiation towards a pro-inflammatory phenotype upon wounding without affecting their migration
GSE123105	Selective roles of vertebrate PCF11 in premature and full-length transcript termination
GSE123241	Single cell RNA-Seq reveals Fgf signaling dynamics during sensory hair cell regeneration
GSE123778	Single cell sequencing analysis of the zebrafish pineal gland
GSE124147	Transcription factor induction of vascular blood stem cell niches in vivo [ATAC-Seq]
GSE124148	Transcription factor induction of vascular blood stem cell niches in vivo [RNA-Seq]
GSE124149	Transcription factor induction of vascular blood stem cell niches in vivo [scRNA-Seq]
GSE124150	Transcription factor induction of vascular blood stem cell niches in vivo [TOMO-Seq]
GSE124151	Transcription factor induction of vascular blood stem cell niches in vivo
GSE124555	Selective roles of vertebrate PCF11 in premature and full-length transcript termination (zebrafish 3' mRNA-seq)
GSE124779	RNAseq of rim cells and retinal neuroepithelial cells of zebrafish optic cup at 18-20ss stage
GSE125354	Examination of gene expression in beta-cells isolated from either wildtype or alms1 mutant zebrafish
GSE125945	Genetic ablation of maternal SoxB1 results in the delay of gastrulation gene regulatory program in zebrafish
GSE126647	Pbx4 limits vertebrate heart size and promotes pharyngeal arch artery development through partitioning progenitor fates within the second heart field and restricting proliferation
GSE126747	HDAC1-mediated repression of the retinoic acid-responsive gene ripply3 promotes second heart field development
GSE127174	The miR-199-CDK2 axis modulates neutrophil migration and systemic inflammation
GSE128083	RNA helicase DDX21 mediates nucleotide stress responses (RNA-Seq drCTr9MO)
GSE128084	RNA helicase DDX21 mediates nucleotide stress responses (RNA-Seq drLef)
GSE128086	RNA helicase DDX21 mediates nucleotide stress responses
GSE129035	Dram1 deficiency enhances mycobacterial disease progression due to pyroptotic cell death of infected macrophages
GSE130037	MITF-low zebrafish melanomas reveal cells with no MITF activity at the site of residual disease
GSE130120	RNA 5-methylcytosine facilitates maternal-to-zygotic transition through preventing maternal RNA decay
GSE130800	Transcriptomic profiling of zebrafish livers with nAtf6 overexpression at collected at 78 and 120 hpf
GSE130801	Transcriptomic profiling of zebrafish livers at 5 dpf with nAtf6 overexpression or in response to ethanol exposures
GSE130944	Chromatin accessibility established by Pou5f3, Sox19b and Nanog primes genes for activity during zebrafish genome activation.
GSE132166	Functionally distinct subgroups of Oligodendrocyte precursor cells integrate neural activity and execute myelin formation
GSE132304	Tissue-specific transcriptomes reveal gene expression trajectories in two maturing skin epithelial layers in zebrafish embryos
GSE133088	Persistent epigenetics changes due to elevated temperature during early development in mature zebrafish gonads
GSE133436	RNA sequencing data of aging zebrafish brain progenitor cells
GSE133437	Genome-wide maps of HPSH-CTCF binding in prim-5 stage zebrafish embryos
GSE133487	Respiratory supercomplexes provide metabolic efficiency in zebrafish
GSE134135	Expression of telomerase prevents ALT and maintains telomeric heterochromatin in juvenile brain tumors.
GSE134187	the role of SMN complex in tissue regeneration
GSE134291	Sexual dimorphic methylation patterns in IL1b and Casp9 in the zebrafish gonads
GSE134334	Deficiency in Ybx1 Leads to Postnatal Lethality and IBD-like Disease in Zebrafish
GSE134400	Zebrafish sex differentiation under LPS-mediated inflamatory process.
GSE134646	Exploring the effects of rearing densities on epigenetic modifications in the zebrafish gonads
GSE135019	Role of the Exon Junction Complex in Danio rerio
GSE135780	Anterior-Posterior gene expression differences in zebrafish Vagus motor neurons
GSE135781	Gene expression changes in Retinoic Acid-treated zebrafish Vagus motor neurons
GSE136448	The effect of Kctd15 expression during early development in zebrafish [Dr_dev]
GSE136449	The effect of Kctd15 expression on the neural crest and sex organs in zebrafish [Dr_emb]
GSE136761	Methylation and Hydroxymethylation profile of zebrafish tet2 mutant
GSE136900	MITF-low melanoma subtype models in zebrafish reveal transcriptional sub-clusters and MITF-independent residual disease
GSE137424	Temporal transcriptome in Pou5f3 and Sox19b mutant zebrafish embryos
GSE137629	Next Generation Sequencing to compare gene expression of PC-3M-Pro4 in cell culture and in zebrafish metastasis
GSE137784	Single-cell transcriptomic analysis of two models of zebrafish beta-catenin-driven HCC
GSE137788	Transcriptomic analysis of two models of zebrafish beta-catenin-driven HCC
GSE137971	Cellular diversity of the regenerating caudal fin
GSE138181	runx1 controls zebrafish heart regeneration by promoting scar deposition as well as inhibiting myocardial proliferation and survival
GSE140045	Domoic acid disruption of neurodevelopment and behavior involves altered myelination in the spinal cord
GSE140240	ATAC-seq profile of zebrafish periderm at 4-somite stage
GSE140241	Zebrafish periderm at 4-somite stage
GSE140821	Gene expression in the adult zebrafish intestine during starvation and refeeding
GSE141114	Structural basis of epigenetic protection of mouse lymphoid progenitor cells by Dnmt1 (Zebrafish)
GSE142484	Single-cell transcriptomic analysis of embryonic vasculogenesis identifies the conversion of Etv2-deficient vascular progenitors into skeletal muscle
GSE143312	Zebrafish Retina thrb-/- RNA-seq
GSE143734	Global gene expression analysis of enveloping layer (EVL) and non-EVL cells from 6 hpf zebrafish embryos
GSE143750	Single-cell transcriptomic analysis of embryonic vasculogenesis identifies the conversion of Etv2-deficient vascular progenitors into skeletal muscle
GSE143945	Aryl hydrocarbon receptor mediates larval zebrafish fin duplication following exposure to benzofluoranthenes.
GSE144040	Global promoter usage in the differentfractions of the cell during early zebrafish development
GSE145551	Functional in vivo characterization of zebrafish sox10 enhancers in melanoma and neural crest
GSE146124	Wnt signaling regulates neural plate patterning in distinct temporal phases with dynamic transcriptional outputs
GSE146175	Transcriptomic analyses in brains of exposed F0 zebrafish and their unexposed F2 offspring after exposure to a mixture of PCBs and PBDEs
GSE146605	Functional Characterization and Expression Analyses Show Differential Roles of Maternal and Zygotic Dgcr8 in Early Embryonic Development [miRNA-seq]
GSE146606	Functional Characterization and Expression Analyses Show Differential Roles of Maternal and Zygotic Dgcr8 in Early Embryonic Development
GSE147068	Transcriptome of the panx1a-knock out zebrafish
GSE147112	Zebrafish Ski7 tunes RNA levels during the oocyte-to-embryo transition
GSE149152	Fli1+ cells transcriptional analysis reveals LMO2-PRDM16 axis in angiogenesis
GSE149786	Zebrafish embryonic mpeg+ macrophages
GSE149787	Zebrafish juvenile mpeg+ macrophages
GSE149789	Zebrafish mpeg+ cells
GSE149919	Transgenerational whole genome bisulphite sequencing data from adult zebrafish exposed to low level TCDD
GSE150046	Gene expression profile of zebrafish synpo2 mutant
GSE150189	Analysis of gene network branching during optic cup morphogenesis in zebrafish
GSE150346	Analysis of gene network branching during optic cup morphogenesis in zebrafish (RNA-Seq)
GSE151452	RNA exosome mutations in pontocerebellar hypoplasia alter ribosome biogenesis and p53 levels
GSE151676	Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [tfap2a/e]
GSE151677	Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [2D culture]
GSE151678	Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma [3D culture]
GSE151679	Cell state diversity promotes metastasis through heterotypic cluster formation in melanoma
GSE152038	Insulin-like 3 affects zebrafish spermatogenic cells directly and via Sertoli cells
GSE152199	ATAC sequencing of zebrafish pancreatic beta-cells
GSE152531	Induction of adult cardiomyocyte renewal by Klf1
GSE152741	Chromatin architecture transitions from zebrafish sperm through early embryogenesis [Hi-C]
GSE152742	Chromatin architecture transitions from zebrafish sperm through early embryogenesis [ChIP-seq]
GSE152743	Chromatin architecture transitions from zebrafish sperm through early embryogenesis [ATAC-seq]
GSE152744	Chromatin architecture transitions from zebrafish sperm through early embryogenesis
GSE152842	Molecular classification of zebrafish retinal ganglion cells links genes to behavior
GSE152982	Single-cell transcriptomic analysis 30 hpf Zebrafish trunks
GSE153755	Unfolded protein response (UPR) and endoplasmic reticulum (ER) stress in acromegaly
GSE153828	Embryonic transcriptome analysis of wt vs irf6-/- zebrafish at 4hpf
GSE154193	Endothelial Brg1-Notch Signaling Regulates Zebrafish Heart Regeneration
GSE154885	Transcriptome of nkx2.2a(+), olig2(+), dbx1b(+) cells from 14hpf zebrafish embryo
GSE157816	Nanoplastics and sunscreens contained in personal care products induce neurotoxicity in early zebrafish embryos
GSE158098	Redundant mechanisms driven independently by RUNX1 and GATA2 for hematopoietic development
GSE158101	Redundant mechanisms driven independently by RUNX1 and GATA2 for hematopoietic development
GSE158104	Keratin5-cytoskeleton-BMP4 network regulates cell phenotype conversions during cardiac regeneration
GSE158538	Bulk RNA-seq of fin and body melanocytes and microenvironments
GSE159845	Critical Role for a Subset of Intestinal Macrophages in Shaping Gut Microbiota in Adult Zebrafish
GSE160138	Nrl-dependent and independent rod photoreceptor development in zebrafish [RNA-Seq]
GSE160140	Nrl-dependent and independent rod photoreceptor development in zebrafish [scRNA-Seq]
GSE160141	Nrl-dependent and independent rod photoreceptor development in zebrafish
GSE160475	Zebrafish as an animal model for the antiviral RNA interference pathway
GSE160662	Paternal hypoxia exposure primes offspring for increased hypoxia resistance
GSE160708	RNAseq on uhrf1 zebrafish mutant larvae at 5 dpf compared to phenotypically normal siblings
GSE160726	Transcriptomic profiling of the liver from dnmt1 mutant zebrafish larvae compared to their phenotypically normal siblings at 120 hpf
GSE160728	Transcriptomic profiling of whole larvae and the liver from dnmt1 mutant zebrafish larvae compared to their phenotypically normal siblings at 120 hpf
GSE161855	A Cell Atlas of Microbe-Responsive Processes in the Zebrafish Intestine
GSE161867	The role of Niemann-Pick type C2 in zebrafish embryonic development
GSE162415	Temporal transcriptome in Pou5f3, Nanog and Sox19b mutant zebrafish embryos
GSE162433	RNA Sequencing of sorted neutrophils cells from tet mutant zebrafish embryos
GSE162435	RNA Sequencing and RRBS of sorted myeloid cells from tet mutant zebrafish embryos
GSE164423	Transcriptomic Analysis of the Zebrafish Prion Mutants Supports Conserved Cross-Species Function of the Cellular Prion Protein
GSE164966	Activation of Nkx2.5 Transcriptional Program is Required for Adult Myocardial Repair
GSE167125	Chromatin architecture transitions from zebrafish sperm through early embryogenesis [ChIP-seq II]
GSE167187	δ-cell conversion to insulin+ bihormonal cells in zebrafish
GSE168133	scRNA-seq timeline of first pharyngeal arch migratory stream in zebrafish
GSE168179	A single-cell transcriptomic analysis of cranial neural crest development reveals timing of lineage decisions and novel regulators
GSE168359	Establishment of Developmental Gene Silencing by Ordered Polycomb Complex Recruitment in Early Zebrafish Embryos [RNA-seq]
GSE168360	Establishment of Developmental Gene Silencing by Ordered Polycomb Complex Recruitment in Early Zebrafish Embryos [ChIP-seq]
GSE168361	Establishment of Developmental Gene Silencing by Ordered Polycomb Complex Recruitment in Early Zebrafish Embryos [ATAC-seq]
GSE168362	Establishment of Developmental Gene Silencing by Ordered Polycomb Complex Recruitment in Early Zebrafish Embryos
GSE168727	TLR7 ligation augments hematopoiesis in Rps14 deficiency via paradoxical inflammatory signalling
GSE169689	Redundant mechanisms driven independently by RUNX1 and GATA2 for hematopoietic development [zebrafish bulk RNA-seq2]
GSE171482	scRNA-seq of tailbud development in zebrafish
GSE171906	RNA-Seq from zebrafish adult tissues
GSE172031	Developmental chromatin programs determine oncogenic competence in melanoma [Zebrafish]
GSE172069	Developmental chromatin programs determine oncogenic competence in melanoma
GSE173179	mRNA sequence analysis of zebrafish embryos injected with the codon tag reporter library
GSE175444	Distinctive roles for the chromatin remodeling ATPases Brg1 and Brm in early zebrafish embryos [ChIP-seq]
GSE175446	Distinctive roles for the chromatin remodeling ATPases Brg1 and Brm in early zebrafish embryos [RNA-seq]
GSE175447	Distinctive roles for the chromatin remodeling ATPases Brg1 and Brm in early zebrafish embryos
GSE178801	Transcriptional Profile in Zebrafish Melanocytes and Melanoma Tumors [RNA-seq]
GSE178802	Chromatin Accessibility in Zebrafish Melanocytes and Melanoma Tumors [ATAC-seq]
GSE178803	Transcriptional Profile and Chromatin Accessibility in Zebrafish Melanocytes and Melanoma Tumors
GSE178842	Reduced representation bisulfite sequencing (RRBS) of the retina of crumbs 2a (crb2a m289/m289) zebrafish model of Leber congenital amaurosis and retinitis pigmentosa.
GSE178919	Repurposing Tamoxifen as Potential Host-Directed Therapeutic For Tuberculosis
GSE179520	Downregulation of WT1 transcription factor gene expression is required to promote myocardial fate [RNA-seq]
GSE179522	Downregulation of WT1 transcription factor gene expression is required to promote myocardial fate
GSE179883	Whole larval transcriptional changes due to nlrc3l deficiency in larval zebrafish.
GSE180778	Regulation of retina microexons by srrm3 in zebrafish
GSE180781	Regulation of retina microexons by srrm3 in zebrafish and by SRRM3, SRRM4 and MSI1 in human cell lines
GSE181571	Increased DNA replication length offsets developmental defects induced by hypomorphic DNA methylcytosine methyltransferase activity [RNA-Seq]
GSE181572	Increased DNA replication length offsets developmental defects induced by hypomorphic DNA methylcytosine methyltransferase activity [Bisulfite-Seq]
GSE181573	Increased DNA replication length offsets developmental defects induced by hypomorphic DNA methylcytosine methyltransferase activity
GSE182979	Transcriptome analysis of young and old zebrafish ventricles
GSE183002	Comprehensive genome wide analysis of Satb2 function during vertebrate embryogenesis
GSE185283	Time-resolved RNA sequencing reveals distinct post-transcriptional regimes during zebrafish embryogenesis
GSE185731	Single cell transcriptomic analysis of spinal Dmrt3 neurons in zebrafish and mouse identifies distinct subtypes and reveal novel subpopulations within the dI6 domain
GSE186889	RNA-Seq analysis of Wild Type and lrpap1-/- zebrafish eyes at three month
GSE188560	Transcriptomic profiling of adult zebrafish photoreceptors
GSE189352	Characterization of zebrafish melanoma-derived interstitial EVs and their ncRNA content
GSE189906	Melanopsin elevates locomotor activity during the wake state of the diurnal zebrafish
GSE190741	PCB126 exposure induced DNA methylation and gene expression changes in adult zebrafish testis
GSE192436	Expression of histone 3 wildtype vs. histone 3 (K27M) using MiniCoopR in zebrafish
GSE192439	Expression of histone 3 wildtype vs. histone 3 (K9M) using MiniCoopR in zebrafish
GSE192511	Translational profiling of zebrafish retina cells using translating ribosome affinity purification methods
GSE192947	A regulatory network of Sox and Six transcription factors initiate a cell fate transformation during hearing regeneration in adult zebrafish
GSE193373	Gene expression profiling of Zebrafish larvae treated with bepridil
GSE194054	Nr2f1a maintains atrial nkx2.5 expression to repress pacemaker identity within venous atrial cardiomyocytes of zebrafish
GSE195548	Sinus venosus adaptation models prolonged cardiovascular disease and reveals insights into evolutionary transitions of the vertebrate heart
GSE195550	Sinus venosus adaptation models prolonged cardiovascular disease and reveals insights into evolutionary transitions of the vertebrate heart
GSE196043	mRNA aging shapes the Cap2 methylome in mammalian mRNA
GSE196102	RNA seq analysis of adult olfactory epithelium exposed to Phenyl ethyl ethanol during early development in zebrafish
GSE199023	Gene expression changes induced by transgenic expression of CCDC6-RET or BRAF(V600E) oncogenes in zebrafish thyroid tumors [Zebrafish RET vs BRAF adult tumors]
GSE199697	leptin b and its regeneration enhancer illustrate regenerative features of zebrafish hearts
GSE200756	Stage- and cell type-specific requirements of ikzf1 during haematopoietic differentiation in zebrafish
GSE200936	Effect of endothelial specific inhibition of Brg1 on gene expression during zebrafish heart regeneration [RNA-seq]
GSE200938	Effect of endothelial specific inhibition of Brg1
GSE201139	RNA-seq experiments on heart regeneration in WT, foxm1 and dusp6 mutants.
GSE201604	Oxoeicosanoid signaling promotes early antimicrobial defense in zebrafish (Danio rerio)
GSE202238	Alx function in the developing eye
GSE203631	Multigenerational Effects of Dietary Benzo[a]pyrene Exposure on Behavior, Gene Expression, and DNA Methylation
GSE205498	Transcriptomic evolution across bilaterian tissues
GSE205599	Fin ray branching is defined by TRAP+ osteolytic tubules in zebrafish
GSE206039	VGLL2-NCOA2 leverages developmental programs for pediatric sarcomagenesis
GSE207457	Transcriptome profiles of zebrafish larvae from a caffeine-induced anxiety model and a high fat-diet induced obesity model [RNA-Seq]
GSE207476	Transcriptomics analysis of gene expression at three different developmental stages of zebrafish embryos
GSE207549	Transcriptome profiles of zebrafish larvae from a caffeine-induced anxiety model and a high fat-diet induced obesity model [miRNA-Seq]
GSE207550	Transcriptome profiles of zebrafish larvae from a caffeine-induced anxiety model and a high fat-diet induced obesity model
GSE207660	Effects of scd deletion on gene expression during zebrafish liver lipid homeostasis
GSE207739	Evaluating the toxicity of two endocrine disrupting chemicals, Raloxifene and Resorcinol using a larval zebrafish transcriptomic approach
GSE210642	X-linked myotubular myopathy is associated with epigenetic alterations and is ameliorated by HDAC inhibition
GSE210940	Hematopoietic stem and progenitor cell heterogeneity is inherited from the embryonic hemogenic endothelium [RNA-seq]
GSE210942	Hematopoietic stem and progenitor cell heterogeneity is inherited from the embryonic hemogenic endothelium.
GSE213263	Craters on the melanoma surface serve as hubs for CD8+ T cells [ATAC-Seq]
GSE213286	Craters on the melanoma surface serve as hubs for CD8+ T cells
GSE214952	Stage- and cell type-specific requirements of ikzf1 during hematopoietic differentiation in zebrafish [ikaros]
GSE214955	Stage- and cell type-specific requirements of ikzf1 during hematopoietic differentiation in zebrafish
GSE216619	Taxonomy of introns, their evolution, and the role of minor introns in stress response
GSE217623	Comparison of proteogenomic strategies for the generation of zebrafish fit-for-purpose protein databases
GSE220564	Dlx3b/4b-dependent genes in early zebrafish inner ear development
GSE220565	Atoh1b-dependent genes in early zebrafish inner ear development
GSE225089	Mettl16 promotes hematopoietic stem and progenitor cell expansion in embryonic hematopoiesis [RNA-seq]
GSE225137	Mettl16 promotes hematopoietic stem and progenitor cell expansion in embryonic hematopoiesis
GSE227113	Transcription factor induction of vascular blood stem cell niches in vivo [ATAC-Seq 2]
GSE227754	DNA methylation profiling of zebrafish DNMT3aa and DNMT3ab mutants
GSE228057	Transcriptome profiling Zebrafish Sap130a gene mutations in embryogenesis
GSE228450	Transcriptome profiling Zebrafish Sap130b gene mutations in embryogenesis
GSE228451	Transcriptome profiling Zebrafish Sap130a and Sap130b gene mutations in embryogenesis
GSE229261	Low input RNA-seq of endothelial cells sorted from tail of zebrafish larvae
GSE229995	Unexpected consequences of combined glucocerebrosidase and acid sphingomyelinase deficiency in a model of Parkinson’s disease
GSE230236	The secreted neuronal signal Spock1 regulates the blood-brain barrier
GSE232902	Transcriptomic analysis of long wavelength-sensing cones of zebrafish retina
GSE233631	Microbiota dysbiosis associated with type 2 diabetes-like effects caused by chronic exposure to a mixture of chlorinated persistent organic pollutants in zebrafish [I]
GSE233633	Microbiota dysbiosis associated with type 2 diabetes-like effects caused by chronic exposure to a mixture of chlorinated persistent organic pollutants in zebrafish
GSE234104	Sex blind: bridging the gap between drug exposure and sex-related gene expression in Danio rerio using next-generation sequencing (NGS) data and a literature review to find the missing links in pharmaceutical and environmental toxicology studies
GSE234435	Molecular basis of retinal remodeling in a Zebrafish model of Retinitis Pigmentosa
GSE234661	Single Cell RNA Sequencing of adult WT Zebrafish Retina
GSE235280	Ancient vertebrate dermal armor evolved from trunk neural crest
GSE236051	Dual transcriptomics of host-pathogen interaction of neonatal sepsis/meningitis causing isolate Cronobacter turicensis z3032 with zebrafish larvae
GSE238174	Depletion of tet2 results in age-dependent changes in DNA methylation and gene expression in a zebrafish model of myelodysplastic syndrome [DNAmethylation]
GSE238176	Depletion of tet2 results in age-dependent changes in DNA methylation and gene expression in a zebrafish model of myelodysplastic syndrome
GSE238240	Retina-derived signals control pace of neurogenesis in visual brain areas but not circuit configuration
GSE239498	Transcriptome analysis of cardiac tissue from Wild-type (WT) andsalvianolate-treated Zebrafish
GSE239594	Transcriptomic differences between deeply quiescent and activated adult NSCs
GSE239597	Transcriptomic differences between juvenile and adult quiescent NSCs
GSE239598	Prosaposin promotes neural stem cell quiescence
GSE239622	CDKN1A Deficiency in Zebrafish Promote Follicle Maturation and Degeneration Mediated by CRISPR/Cas9 Targeted Disruption
GSE239623	Genetic Evidence for the Gatekeeping Role of Ybx1 in Controlling Follicle Activation and Early Folliculogenesis by Regulation of Cdkn1a in the Zebrafish
GSE240125	Evaluating the toxicity of two endocrine disrupting chemicals, BPA and TBBPA using a larval zebrafish transcriptomic approach
GSE241107	Control of poly(A)-tail length and translation in vertebrate oocytes and early embryos
GSE248535	Social stress in fathers affects sperm small RNA and offspring transcriptome profiles
GSE248952	Cohesin composition and dosage independently affect early development in zebrafish
GSE249932	laser-captured chondrocyte transcriptomes from cranial base
GSE252307	Behavioral and transcriptomic analyses of mecp2 function in zebrafish
GSE252417	The human pathogen Mycobacterium tuberculosis and the fish pathogen Mycobacterium marinum trigger the same core set of late immune response genes in zebrafish larvae
GSE255304	Ctla-4 deficiency induces an inflammatory bowel disease-like phenotype in a zebrafish model [bulkRNA-seq]
GSE270352	Specific oncogene activation of the cell of origin in mucosal melanoma [ATAC-Seq]
GSE276252	Effect of D-glucose and L-glucose on gene expression of zebrafish embryos at 72 hpf (hours post fertilization) and 96 hpf.
GSE278690	Phenotypic impact of individual conserved neuronal microexons and their regulators in zebrafish
GSE283253	Effect of rhpn2 knowout on gene expression of zebrafish embryos at 72 hpf (hours post fertilization) .
GSE287811	Reactivation of an Embryonic Cardiac Neural Crest Transcriptional Subcircuit During Zebrafish Heart Regeneration [scRNA-seq]
GSE287813	Reactivation of an Embryonic Cardiac Neural Crest Transcriptional Subcircuit During Zebrafish Heart Regeneration [bulk ATAC-seq]
GSE287815	Reactivation of an Embryonic Cardiac Neural Crest Transcriptional Subcircuit During Zebrafish Heart Regeneration [bulk RNA-seq]
GSE288660	p21, ccng1, foxo3b and fbxw7 contribute to p53-dependent cell-cycle arrest [PNP IR]
GSE288666	p21, ccng1, foxo3b and fbxw7 contribute to p53-dependent cell-cycle arrest [MPNP timecross]
GSE288667	p21, ccng1, foxo3b and fbxw7 contribute to p53-dependent cell-cycle arrest [MPNP 18hpf]
GSE291774	Transcriptome analysis of nphp1(ex15-del4); nphp4(sa38686) double mutant zebrafish
GSE291847	Targeting GLP-1 signaling ameliorates cystogenesis in a zebrafish model of nephronophthisis
GSE294778	Investigation into molecular mechanisms behind microbiome and normal neurobehavioral development in zebrafish
GSE297343	Transcriptomic effects of INTS1 knockout in zebrafish larvae
GSE303101	Sox11 genes affect neuronal differentiation in the developing zebrafish enteric nervous system
GSE309552	Cilia Spin the Reissner fiber, an extracellular thread required for morphogenesis