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GEO help: Mouse over screen elements for information. |
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Status |
Public on Dec 02, 2013 |
Title |
[HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [HuGene10stv1_68_020] |
Technology type |
in situ oligonucleotide |
Distribution |
custom-commercial |
Organism |
Homo sapiens |
Manufacturer |
Affymetrix |
Manufacture protocol |
See manufacturer's web site
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Description |
custom CDF: hugene10stv1_68_020.cdf Alternative to GPL6244
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Submission date |
Sep 17, 2013 |
Last update date |
Dec 04, 2013 |
Contact name |
Johannes Rainer |
E-mail(s) |
johannes.rainer@eurac.edu
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Organization name |
Eurac Researc
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Department |
Institute for Biomedicine
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Lab |
Biomedical Informatics
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Street address |
Via A. Volta 21
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City |
Bolzano |
ZIP/Postal code |
39100 |
Country |
Italy |
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Samples (30)
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GSM1232713, GSM1232714, GSM1232715, GSM1232716, GSM1232717, GSM1232718
GSM1232719, GSM1232720, GSM1232721, GSM1232722, GSM1232723, GSM1232724, GSM1232725, GSM1232726, GSM1232727, GSM1232728, GSM1232729, GSM1232730, GSM1232731, GSM1232732, GSM1232733, GSM1232734, GSM1232735, GSM1232736, GSM1232737, GSM1232738, GSM1232739, GSM1232740, GSM1232741, GSM1232742
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Series (1) |
GSE50936 |
SOCS2 expression correlates with tumor malignancy, exerts growth promoting effects and is enhanced by androgens in prostate cancer |
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Relations |
Alternative to |
GPL6244 (Alternative CDF [official]) |
Data table header descriptions |
ID |
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SPOT_ID |
Ensembl transcript identifier |
gene_id |
Ensembl gene identifier |
probe_count |
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probes |
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transcript_biotype |
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symbol |
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ORF |
Entrez gene ID |
gene_name |
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gene_biotype |
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chromosome_name |
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chromosome_strand |
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Data table |
ID |
SPOT_ID |
gene_id |
probe_count |
probes |
transcript_biotype |
symbol |
ORF |
gene_name |
gene_biotype |
chromosome_name |
chromosome_strand |
68ENST00000446986 |
ENST00000446986 |
ENSG00000224281 |
5 |
1000020;222984;409499;675662;29503 |
processed_transcript |
SLC25A5-AS1 |
100303728 |
SLC25A5-AS1 |
lincRNA |
X |
-1 |
68ENST00000493889 |
ENST00000493889 |
ENSG00000170759 |
4 |
1000064;698807;656739;308849 |
processed_transcript |
KIF5B |
3799 |
KIF5B |
protein_coding |
10 |
-1 |
68ENST00000362715 |
ENST00000362715 |
ENSG00000199585 |
4 |
1000078;508161;1009846;737215 |
rRNA |
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RN5S119 |
rRNA |
2 |
1 |
68ENST00000411412 |
ENST00000411412 |
ENSG00000136535 |
8 |
1000082;772214;980385;1063826;411152;245032;953636;616553 |
protein_coding |
TBR1 |
10716 |
TBR1 |
protein_coding |
2 |
1 |
68ENST00000410035 |
ENST00000410035 |
ENSG00000136535 |
13 |
1000082;772214;980385;255115;344534;411152;245032;340235;222268;1052311;953636;616553;1030766 |
protein_coding |
TBR1 |
10716 |
TBR1 |
protein_coding |
2 |
1 |
68ENST00000477804 |
ENST00000477804 |
ENSG00000136535 |
7 |
1000082;980385;255115;344534;222268;1052311;616553 |
processed_transcript |
TBR1 |
10716 |
TBR1 |
protein_coding |
2 |
1 |
68ENST00000489530 |
ENST00000489530 |
ENSG00000136535 |
3 |
1000082;980385;616553 |
processed_transcript |
TBR1 |
10716 |
TBR1 |
protein_coding |
2 |
1 |
68ENST00000533592 |
ENST00000533592 |
ENSG00000023191 |
4 |
10000;537940;618220;794104 |
processed_transcript |
RNH1 |
6050 |
RNH1 |
protein_coding |
11 |
-1 |
68ENST00000485981 |
ENST00000485981 |
ENSG00000106686 |
10 |
100013;225735;478466;91508;37766;808314;773423;74224;979962;589555 |
processed_transcript |
SPATA6L |
55064 |
SPATA6L |
protein_coding |
9 |
-1 |
68ENST00000498087 |
ENST00000498087 |
ENSG00000106686 |
9 |
100013;225735;882051;37766;808314;922941;979962;589555;963337 |
processed_transcript |
SPATA6L |
55064 |
SPATA6L |
protein_coding |
9 |
-1 |
68ENST00000381890 |
ENST00000381890 |
ENSG00000106686 |
21 |
100013;365266;614793;862323;1041694;447387;996730;397174;1031344;207079;225735;882051;37766;808314;354146;338139;773423;74224;646170;979962;589555 |
protein_coding |
SPATA6L |
55064 |
SPATA6L |
protein_coding |
9 |
-1 |
68ENST00000451763 |
ENST00000451763 |
ENSG00000106686 |
18 |
100013;490030;862323;1041694;996730;1031344;225735;478466;91508;37766;808314;354146;773423;74224;10362;768303;979962;589555 |
retained_intron |
SPATA6L |
55064 |
SPATA6L |
protein_coding |
9 |
-1 |
68ENST00000223517 |
ENST00000223517 |
ENSG00000106686 |
17 |
100013;490030;862323;1041694;996730;397174;225735;478466;91508;882051;37766;808314;354146;773423;74224;979962;589555 |
processed_transcript |
SPATA6L |
55064 |
SPATA6L |
protein_coding |
9 |
-1 |
68ENST00000486047 |
ENST00000486047 |
ENSG00000106686 |
33 |
100013;641990;94477;290021;365266;321774;614793;862323;1041694;447387;48966;996730;397174;1031344;207079;225735;478466;91508;882051;37766;808314;354146;338139;1059327;10362;480975;768303;777192;441847;681738;646170;979962;589555 |
nonsense_mediated_decay |
SPATA6L |
55064 |
SPATA6L |
protein_coding |
9 |
-1 |
68ENST00000406861 |
ENST00000406861;ENST00000381895 |
ENSG00000106686 |
32 |
100013;641990;94477;365266;490030;614793;862323;1041694;447387;996730;397174;1031344;207079;225735;478466;91508;882051;37766;808314;354146;338139;1059327;773423;74224;10362;480975;768303;777192;681738;646170;979962;589555 |
nonsense_mediated_decay;protein_coding |
SPATA6L |
55064 |
SPATA6L |
protein_coding |
9 |
-1 |
68ENST00000475086 |
ENST00000475086 |
ENSG00000106686 |
22 |
100013;641990;94477;365266;614793;447387;996730;397174;207079;882051;37766;808314;354146;338139;1059327;480975;777192;922941;681738;646170;589555;963337 |
protein_coding |
SPATA6L |
55064 |
SPATA6L |
protein_coding |
9 |
-1 |
68ENST00000461761 |
ENST00000461761 |
ENSG00000106686 |
32 |
100013;641990;94477;365266;614793;862323;1041694;447387;48966;996730;397174;207079;225735;478466;91508;882051;37766;808314;354146;338139;1059327;773423;74224;480975;19704;777192;441847;770442;681738;646170;979962;589555 |
nonsense_mediated_decay |
SPATA6L |
55064 |
SPATA6L |
protein_coding |
9 |
-1 |
68ENST00000454239 |
ENST00000454239 |
ENSG00000106686 |
26 |
100013;641990;94477;365266;614793;862323;1041694;447387;996730;397174;207079;225735;882051;37766;808314;354146;338139;1059327;480975;777192;922941;681738;646170;979962;589555;963337 |
protein_coding |
SPATA6L |
55064 |
SPATA6L |
protein_coding |
9 |
-1 |
68ENST00000471669 |
ENST00000471669 |
ENSG00000106686 |
7 |
100013;862323;1041694;1031344;37766;808314;589555 |
retained_intron |
SPATA6L |
55064 |
SPATA6L |
protein_coding |
9 |
-1 |
68ENST00000496798 |
ENST00000496798 |
ENSG00000106686 |
16 |
100013;862323;1041694;996730;1031344;225735;478466;91508;882051;37766;808314;354146;10362;768303;979962;589555 |
processed_transcript |
SPATA6L |
55064 |
SPATA6L |
protein_coding |
9 |
-1 |
Total number of rows: 112702
Table truncated, full table size 25093 Kbytes.
Supplementary file |
Size |
Download |
File type/resource |
GPL17737_hugene10stv1_68_020.cdf.annotation.txt.gz |
6.2 Mb |
(ftp)(http) |
TXT |
GPL17737_hugene10stv1_68_020.cdf.gz |
24.4 Mb |
(ftp)(http) |
CDF |
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