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Platform GPL17585 Query DataSets for GPL17585
Status Public on Aug 20, 2013
Title [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [probe set (exon) version]
Technology type in situ oligonucleotide
Distribution commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol See manufacturers website
 
 
Submission date Aug 19, 2013
Last update date Oct 21, 2015
Organization Affymetrix, Inc.
E-mail geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (1524) GSM1378086, GSM1378087, GSM1378088, GSM1378089, GSM1378090, GSM1378091 
Series (62)
GSE57265 Expression data of hAEC, hAFSC and hBMSC before and after osteogenic induction in vitro
GSE62410 Transcriptome profiling of Normal and Cancerous Prostate Cells
GSE62497 Transcriptome profiling of Normal and Cancerous Prostate Cells using Affymetrix Human Transcriptome Array 2.0
Relations
Alternative to GPL17586
Alternative to GPL19198 (Alternative CDF [hta20hsensgcdf_18.0.0.cdf])
Alternative to GPL20932 (Alternative CDF [hta20hsensgcdf_19.0.0.cdf])

Data table header descriptions
ID
probeset_id Probeset identifier, as listed in the HTA-2_0.r1.pgf analysis library file.
SPOT_ID Probeset name, as listed in HTA-2_0.r1.pgf analysis library file.
transcript_cluster_ids Pipe delimited list of transcript cluster IDs associated with the probeset_id. A transcript cluster is a collection of transcripts (often a gene) that the probeset is associated with
chromosome Chromosome ID
RANGE_GB
SPOT_ID
RANGE_STRAND Genomic strand (+|-)
RANGE_START Probeset genomic start position - hg19 coordinates
RANGE_STOP Probeset genomic stop position - hg19 coordinates
transcript_cluster_start Transcript cluster (often gene) genomic start position - hg19 coordinates
transcript_cluster_stop Transcript cluster (often gene) genomic stop position - hg19 coordinates
probe_count Number of probes associated with the probeset_id
gene_symbols Gene symbols. Pipe delimited. Pipe index matches descriptions field
descriptions Descriptions. Pipe delimited. Pipe index matches gene_symbols field

Data table
ID probeset_id SPOT_ID transcript_cluster_ids chromosome RANGE_GB SPOT_ID RANGE_STRAND RANGE_START RANGE_STOP transcript_cluster_start transcript_cluster_stop probe_count gene_symbols descriptions
2824546_st 18670005 2824546_st --- --- --- --- --- --- --- --- 3 --- Positive Housekeeping Controls - Probeset Type: normgene->exon
2824549_st 18670007 2824549_st --- --- --- --- --- --- --- --- 1 --- Positive Housekeeping Controls - Probeset Type: normgene->exon
2824551_st 18670009 2824551_st --- --- --- --- --- --- --- --- 2 --- Positive Housekeeping Controls - Probeset Type: normgene->exon
2824554_st 18670011 2824554_st --- --- --- --- --- --- --- --- 2 --- Positive Housekeeping Controls - Probeset Type: normgene->exon
2827992_st 18670020 2827992_st --- --- --- --- --- --- --- --- 2 --- Positive Housekeeping Controls - Probeset Type: normgene->exon
2827995_st 18670022 2827995_st --- --- --- --- --- --- --- --- 1 --- Positive Housekeeping Controls - Probeset Type: normgene->exon
2827996_st 18670023 2827996_st --- --- --- --- --- --- --- --- 2 --- Positive Housekeeping Controls - Probeset Type: normgene->exon
2828010_st 18670027 2828010_st --- --- --- --- --- --- --- --- 2 --- Positive Housekeeping Controls - Probeset Type: normgene->exon
2828012_st 18670028 2828012_st --- --- --- --- --- --- --- --- 2 --- Positive Housekeeping Controls - Probeset Type: normgene->exon
2835442_st 18670032 2835442_st --- --- --- --- --- --- --- --- 2 --- Positive Housekeeping Controls - Probeset Type: normgene->exon
2835447_st 18670033 2835447_st --- --- --- --- --- --- --- --- 2 --- Positive Housekeeping Controls - Probeset Type: normgene->exon
2835453_st 18670036 2835453_st --- --- --- --- --- --- --- --- 3 --- Positive Housekeeping Controls - Probeset Type: normgene->exon
2835456_st 18670038 2835456_st --- --- --- --- --- --- --- --- 2 --- Positive Housekeeping Controls - Probeset Type: normgene->exon
2835459_st 18670039 2835459_st --- --- --- --- --- --- --- --- 2 --- Positive Housekeeping Controls - Probeset Type: normgene->exon
2835461_st 18670041 2835461_st --- --- --- --- --- --- --- --- 2 --- Positive Housekeeping Controls - Probeset Type: normgene->exon
2839509_st 18670049 2839509_st --- --- --- --- --- --- --- --- 2 --- Positive Housekeeping Controls - Probeset Type: normgene->exon
2839511_st 18670051 2839511_st --- --- --- --- --- --- --- --- 2 --- Positive Housekeeping Controls - Probeset Type: normgene->exon
2839513_st 18670053 2839513_st --- --- --- --- --- --- --- --- 2 --- Positive Housekeeping Controls - Probeset Type: normgene->exon
2839515_st 18670054 2839515_st --- --- --- --- --- --- --- --- 1 --- Positive Housekeeping Controls - Probeset Type: normgene->exon
2839517_st 18670056 2839517_st --- --- --- --- --- --- --- --- 2 --- Positive Housekeeping Controls - Probeset Type: normgene->exon

Total number of rows: 925032

Table truncated, full table size 187600 Kbytes.




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Supplementary data files not provided

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