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Status
Public on Jul 16, 2018
Title
080125_Majewski_HG18chr13q14
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Homo sapiens Manufacturer
NimbleGen
Manufacture protocol
High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
Description
NimbleGen design name 080125_Majewski_HG18chr13q14. A custom tiling array interrogating a 5MB window around Rb1. Matching probes (PM) roughly every 9bp. The design includes random GC and other control probes.
Submission date
Jul 18, 2013
Last update date
Aug 05, 2022
Contact name
Bogdan Czerniak
E-mail(s)
bczernia@mdanderson.org Organization name
UT MD Anderson Cancer Center
Department
Pathology
Street address
1515 Holcombe
City
Houston
State/province
TX
ZIP/Postal code
77030
Country
USA
Samples (40)
GSM1192521 , GSM1192522 , GSM1192523 , GSM1192524 , GSM1192525 , GSM1192526
GSM1192527 ,
GSM1192528 ,
GSM1192529 ,
GSM1192530 ,
GSM1192531 ,
GSM1192532 ,
GSM1192533 ,
GSM1192534 ,
GSM1192535 ,
GSM1192536 ,
GSM1192537 ,
GSM1192538 ,
GSM1192539 ,
GSM1192540 ,
GSM1192541 ,
GSM1192542 ,
GSM1192543 ,
GSM1192544 ,
GSM1192545 ,
GSM1192546 ,
GSM1192547 ,
GSM1192548 ,
GSM1192549 ,
GSM1192550 ,
GSM1192551 ,
GSM1192552 ,
GSM1192553 ,
GSM1192554 ,
GSM1192555 ,
GSM1192556 ,
GSM1192557 ,
GSM1192558 ,
GSM1192559 ,
GSM1192560 Series (1)
GSE49024 Expression analysis of RB1 region in bladder cancer cases
Data table header descriptions ID CHROMOSOME chromosome of the probe
RANGE_GB RANGE_START RANGE_END LENGTH SEQUENCE
Data table ID CHROMOSOME RANGE_GB RANGE_START RANGE_END LENGTH SEQUENCE CHR13FS045100002
chr13
NC_000013.9
45100002
45100046
45
AGCTCTTTGCCTCATCCAGCCATAAGAAGTTGTACCCCAGGGTAA
CHR13FS045100011
chr13
NC_000013.9
45100011
45100055
45
CCTCATCCAGCCATAAGAAGTTGTACCCCAGGGTAACCGAGGCTA
CHR13FS045100019
chr13
NC_000013.9
45100019
45100063
45
AGCCATAAGAAGTTGTACCCCAGGGTAACCGAGGCTAGGGATTAT
CHR13FS045100027
chr13
NC_000013.9
45100027
45100071
45
GAAGTTGTACCCCAGGGTAACCGAGGCTAGGGATTATCTACAGGC
CHR13FS045100038
chr13
NC_000013.9
45100038
45100082
45
CCAGGGTAACCGAGGCTAGGGATTATCTACAGGCCCAGAAATATA
CHR13FS045100047
chr13
NC_000013.9
45100047
45100098
52
CCGAGGCTAGGGATTATCTACAGGCCCAGAAATATAAGAAGAACAAACAGAT
CHR13FS045100054
chr13
NC_000013.9
45100054
45100116
63
TAGGGATTATCTACAGGCCCAGAAATATAAGAAGAACAAACAGATCAGCACATTGCTATCTTG
CHR13FS045100065
chr13
NC_000013.9
45100065
45100127
63
TACAGGCCCAGAAATATAAGAAGAACAAACAGATCAGCACATTGCTATCTTGGCTTTACTGTA
CHR13FS045100074
chr13
NC_000013.9
45100074
45100135
62
AGAAATATAAGAAGAACAAACAGATCAGCACATTGCTATCTTGGCTTTACTGTACAGAGCCC
CHR13FS045100083
chr13
NC_000013.9
45100083
45100139
57
AGAAGAACAAACAGATCAGCACATTGCTATCTTGGCTTTACTGTACAGAGCCCTTAA
CHR13FS045100091
chr13
NC_000013.9
45100091
45100147
57
AAACAGATCAGCACATTGCTATCTTGGCTTTACTGTACAGAGCCCTTAACCACATTT
CHR13FS045100099
chr13
NC_000013.9
45100099
45100149
51
CAGCACATTGCTATCTTGGCTTTACTGTACAGAGCCCTTAACCACATTTGA
CHR13FS045100108
chr13
NC_000013.9
45100108
45100166
59
GCTATCTTGGCTTTACTGTACAGAGCCCTTAACCACATTTGAGAGTGTCATAAGAAAAA
CHR13FS045100117
chr13
NC_000013.9
45100117
45100173
57
GCTTTACTGTACAGAGCCCTTAACCACATTTGAGAGTGTCATAAGAAAAAAATAATC
CHR13FS045100126
chr13
NC_000013.9
45100126
45100182
57
TACAGAGCCCTTAACCACATTTGAGAGTGTCATAAGAAAAAAATAATCCCTGAATAG
CHR13FS045100135
chr13
NC_000013.9
45100135
45100188
54
CTTAACCACATTTGAGAGTGTCATAAGAAAAAAATAATCCCTGAATAGTTAAAA
CHR13FS045100145
chr13
NC_000013.9
45100145
45100197
53
TTTGAGAGTGTCATAAGAAAAAAATAATCCCTGAATAGTTAAAAAGAAAAACA
CHR13FS045100189
chr13
NC_000013.9
45100189
45100245
57
AGAAAAACAAAGAGAAAGAAATCAAACACCATGTGGATCTCTCTCTTTGGTTGTACA
CHR13FS045100198
chr13
NC_000013.9
45100198
45100258
61
AAGAGAAAGAAATCAAACACCATGTGGATCTCTCTCTTTGGTTGTACAGCAGATCTAATTC
CHR13FS045100206
chr13
NC_000013.9
45100206
45100262
57
GAAATCAAACACCATGTGGATCTCTCTCTTTGGTTGTACAGCAGATCTAATTCTGCT
385012 41664 Kbytes .Supplementary data files not provided
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