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Platform GPL1731 Query DataSets for GPL1731
Status Public on Dec 09, 2004
Title DEL-MAR 14K Integrated Systems
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Gallus gallus
Description Spotted amplified cDNA array on glass. 19200 spot corresponding to 14053 different genes.
liver / fat / muscle / pituitary / hypothalamus / pineal / testis / ovary / oviduct / Oligo
Web link
Contributor(s) Cogburn LA, Porter TE, Ellestad L, Wang X, Carré W
Citation(s) 16554550
Submission date Dec 06, 2004
Last update date Mar 24, 2006
Contact name Larry Albert Cogburn
Phone 302-831-1335
Organization name University of Delaware
Department Animal and Food Sciences
Lab Avian Functional Genomics
Street address 531 South College Ave.
City Newark
State/province DE
ZIP/Postal code 19717
Country USA
Samples (321) GSM113981, GSM113982, GSM113983, GSM113984, GSM113985, GSM113986 
Series (12)
GSE5067 Characterization of Glucocorticoid-Induced Changes in Gene Expression in the Embryonic Pituitary Gland.
GSE5205 Analysis of Hepatic Gene Expression in Chickens with Hormonally-Induced Lean and Fat Phenotypes
GSE7254 Hepatic transcriptional profiling of juvenile broiler chickens divergently selected for high or low body weight

Data table header descriptions
GB_ACC GenBank accession number of sequence
BLAST_X First BlastX result
BLAST_N First BlastN result
CAP3_ASSEMBLY Result of CAP3 Assembly
LOCALISATION Localisation of the gene on Chicken Assembly

Data table
1.1.1 pgp1c.pk002.f23 BI389872 No Hits Found Homo sapiens genomic DNA, chromosome 11q clone:RP11-64D24, complete sequence Contig_16671.1 pgp1c/pgp1c.pk002.f23 chr24:4336858-4341858 1 1 1
1.1.2 pgp1c.pk003.h18 BI390179 unnamed protein product [Mus musculus] No Hits Found Contig_581.1 pgp1c/pgp1c.pk003.h18 chr3:5840848-5845848 1 1 2
1.1.3 pgp1c.pk002.f3 BI389874 No Hits Found No Hits Found pgp1c/pgp1c.pk002.f3 1 1 3
1.1.4 pgp1c.pk003.h23 BI390185 S-adenosylhomocysteine hydrolase-like 1; S-adenosyl homocysteinehydrolase homolog [Homo sapiens] Homo sapiens S-adenosylhomocysteine hydrolase-like 1 (AHCYL1), mRNA Contig_11827.3 pgp1c/pgp1c.pk003.h23 chr26:4915-9915 1 1 4
1.1.5 pgp1c.pk002.f7 BI389876 No Hits Found Homo sapiens 3 BAC RP11-305O4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Contig_1352.2 pgp1c/pgp1c.pk002.f7 chr4:60295673-60300673 1 1 5
1.1.6 pgp1c.pk003.h5 BI390187 sulfotransferase family 4A, member 1; sulfortranferase family 4A,member 1; sulfotransferase-related protein [Homosapiens] Homo sapiens sulfotransferase family 4A, member 1 (SULT4A1), mRNA Contig_25960.1 pgp1c/pgp1c.pk003.h5 chr1:65614231-65619231 1 1 6
1.1.7 pgp1c.pk002.g15 BI389882 similar to 6-phosphogluconate dehydrogenase, decarboxylating [Homo sapiens] Homo sapiens phosphogluconate dehydrogenase (PGD), mRNA Contig_6036.1 pgp1c/pgp1c.pk002.g15 chr21:3572965-3577965 1 1 7
1.1.8 pgp1c.pk003.h7 BI390189 No Hits Found No Hits Found Contig_4962.4 pgp1c/pgp1c.pk003.h7 chr18:6408835-6413835 1 1 8
1.1.9 pgp1n.pk001.l7 BI390636 KIAA0573 protein [Homo sapiens] Homo sapiens thioredoxin domain containing 4 (endoplasmic reticulum) (TXNDC4), mRNA Contig_26536.1 pgp1n/pgp1n.pk001.l7 chr2:89176309-89181309 1 1 9
1.1.10 pgp1n.pk002.o19 BI390969 GLUTATHIONE S-TRANSFERASE (CLASS-ALPHA) Gallus gallus class-alpha glutathione S-transferase (GST) mRNA, complete cds Contig_13404.1 pgp1n/pgp1n.pk002.o19 chr3:86717596-86722596 1 1 10
1.1.11 pgp1n.pk001.m1 No Hits Found Mouse DNA sequence from clone RP23-413O19 on chromosome 11, complete sequence pgp1n/pgp1n.pk001.m1 chr2:1035843-1040843 1 1 11 pgp1n.pk001.m1
1.1.12 pgp1n.pk002.o21 BI390972 laminin alpha 4 [Mus musculus] Homo sapiens laminin, alpha 4 (LAMA4), mRNA pgp1n/pgp1n.pk002.o21 chr3:64188121-64193121 1 1 12
1.1.13 pgp1n.pk001.m17 BI390641 c-myc binding protein [Homo sapiens] Mus musculus, clone MGC:30379 IMAGE:3666296, mRNA, complete cds Contig_784.1 pgp1n/pgp1n.pk001.m17 chrUn:85235125-85240125 1 1 13
1.1.14 pgp1n.pk002.o6 BI395003 Vacuolar ATP synthase subunit E (V-ATPase E subunit) (Vacuolarproton pump E subunit) (V-ATPase 31 kDa subunit) (P31) Homo sapiens ATPase, H+ transporting, lysosomal 31kDa, V1 subunit Eisoform 1 (ATP6V1E1), mRNA Contig_3886.1 pgp1n/pgp1n.pk002.o6 chr1:58448589-58453589 1 1 14
1.1.15 pgp1n.pk001.m7 BI390645 No Hits Found No Hits Found Contig_22630.1 pgp1n/pgp1n.pk001.m7 chr1:106193537-106198537 1 1 15
1.1.16 pgp1n.pk002.o9 BI390980 retinoblastoma-binding protein 1-related protein [Rattusnorvegicus] Homo sapiens RBP1-like protein (BCAA), transcript variant 2, mRNA Contig_6120.1 pgp1n/pgp1n.pk002.o9 chrUn:67051855-67056855 1 1 16
1.1.17 pgp1n.pk003.p9 BI391313 karyopherin alpha 2; RAG cohort 1; importin alpha 1 [Homo sapiens] Homo sapiens karyopherin alpha 2 (RAG cohort 1, importin alpha 1) (KPNA2), mRNA Contig_13027.1 pgp1n/pgp1n.pk003.p9 chr18:6782034-6787034 1 1 17
1.1.18 pgp1n.pk005.a5 BI391638 Chain B, Cytochrome Bc1 Complex From Bovine No Hits Found Contig_15706.3 pgp1n/pgp1n.pk005.a5 chrUn:39550900-39555900 1 1 18
1.1.19 pgp1n.pk004.a12 BI391315 collapsin response mediator protein 1; collapsin response mediator protein 1 (dihydropyrimidinase-like 1) [Homo sapiens] Homo sapiens collapsin response mediator protein 1 (CRMP1), mRNA Contig_25831.1 pgp1n/pgp1n.pk004.a12 chr4:79544863-79549863 1 1 19
1.1.20 pgp1n.pk005.b15 BI391647 WW domain-containing protein 1 [Mus musculus] Homo sapiens, WW domain-containing protein 1, clone MGC:33686 IMAGE:5296005, mRNA, complete cds Contig_2230.1 pgp1n/pgp1n.pk005.b15 chr2:122469176-122474176 1 1 20

Total number of rows: 19200

Table truncated, full table size 3513 Kbytes.

Download family Format
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Supplementary data files not provided

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