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Platform GPL16919 Query DataSets for GPL16919
Status Public on Aug 10, 2013
Title Agilent-034048 RheMac2_HD_1M_8
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Macaca mulatta
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16034048 or 2534048.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Mar 28, 2013
Last update date Aug 10, 2013
Contact name Charles Lee
E-mail(s) clee@rics.bwh.harvard.edu
Organization name Brigham and Women's Hospital/Harvard Medical School
Department Pathology
Lab Lee Lab--Molecular Genetic Research Unit
Street address 221 Longwood Ave., EBRC-422
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Samples (1) GSM1113497
Series (1)
GSE45741 Primate genome architecture linked with formation mechanisms and functional consequences of structural variation

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBankAccession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
CHROMOSOME
RANGE_GB GenBank Accession number
RANGE_START
RANGE_END

Data table
ID COL ROW SPOT_ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION CHROMOSOME RANGE_GB RANGE_START RANGE_END
1 534 1824 MmuCGHBrightCorner pos
2 534 1822 DarkCorner pos
3 534 1820 DarkCorner pos
4 534 1818 RheMac2_chr14:10952929-10952989 FALSE chr14:10952929-10952989 chr14 NC_007871.1 10952929 10952989
5 534 1816 RheMac2_chr12:8067769-8067817 FALSE chr12:8067769-8067817 chr12 NC_007869.1 8067769 8067817
6 534 1814 RheMac2_chr11:133701315-133701361 FALSE chr11:133701315-133701361 chr11 NC_007868.1 133701315 133701361
7 534 1812 RheMac2_chr12:37210760-37210817 FALSE chr12:37210760-37210817 chr12 NC_007869.1 37210760 37210817
8 534 1810 RheMac2_chr13:20394373-20394429 FALSE chr13:20394373-20394429 chr13 NC_007870.1 20394373 20394429
9 534 1808 RheMac2_chr13:117026519-117026565 FALSE chr13:117026519-117026565 chr13 NC_007870.1 117026519 117026565
10 534 1806 RheMac2_chr13:33099709-33099769 FALSE chr13:33099709-33099769 chr13 NC_007870.1 33099709 33099769
11 534 1804 RheMac2_chr13:135184992-135185039 FALSE chr13:135184992-135185039 chr13 NC_007870.1 135184992 135185039
12 534 1802 RheMac2_chr13:123040597-123040647 FALSE chr13:123040597-123040647 chr13 NC_007870.1 123040597 123040647
13 534 1800 RheMac2_chr13:112984599-112984654 FALSE chr13:112984599-112984654 chr13 NC_007870.1 112984599 112984654
14 534 1798 RheMac2_chr14:8391541-8391586 FALSE chr14:8391541-8391586 chr14 NC_007871.1 8391541 8391586
15 534 1796 RheMac2_chr12:60815314-60815364 FALSE chr12:60815314-60815364 chr12 NC_007869.1 60815314 60815364
16 534 1794 RheMac2_chr12:101260555-101260610 FALSE chr12:101260555-101260610 chr12 NC_007869.1 101260555 101260610
17 534 1792 RheMac2_chr11:116772549-116772601 FALSE chr11:116772549-116772601 chr11 NC_007868.1 116772549 116772601
18 534 1790 RheMac2_chr13:134803950-134804006 FALSE chr13:134803950-134804006 chr13 NC_007870.1 134803950 134804006
19 534 1788 RheMac2_chr12:52867184-52867244 FALSE chr12:52867184-52867244 chr12 NC_007869.1 52867184 52867244
20 534 1786 RheMac2_chr13:13247732-13247792 FALSE chr13:13247732-13247792 chr13 NC_007870.1 13247732 13247792

Total number of rows: 974016

Table truncated, full table size 112204 Kbytes.




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