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Platform GPL16902 Query DataSets for GPL16902
Status Public on Aug 10, 2013
Title Agilent-034031 PanTro_HD_1M_3
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Pan troglodytes
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description Arrays of this design have barcodes that begin with 16034031 or 2534031.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date Mar 28, 2013
Last update date Aug 10, 2013
Contact name Charles Lee
E-mail(s) clee@rics.bwh.harvard.edu
Organization name Brigham and Women's Hospital/Harvard Medical School
Department Pathology
Lab Lee Lab--Molecular Genetic Research Unit
Street address 221 Longwood Ave., EBRC-422
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Samples (1) GSM1113472
Series (1)
GSE45741 Primate genome architecture linked with formation mechanisms and functional consequences of structural variation

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBankAccession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
DESCRIPTION Description
CHROMOSOME
RANGE_GB GenBank Accession number
RANGE_START
RANGE_END

Data table
ID COL ROW SPOT_ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION DESCRIPTION CHROMOSOME RANGE_GB RANGE_START RANGE_END
1 534 1824 PtCGHBrightCorner pos
2 534 1822 DarkCorner pos
3 534 1820 DarkCorner pos
4 534 1818 PanTro2_chr4:23499055-23499115 pos chr4:23499055-23499115 chr4 NC_006471.2 23499055 23499115
5 534 1816 PanTro2_chr4:175364730-175364780 pos chr4:175364730-175364780 chr4 NC_006471.2 175364730 175364780
6 534 1814 PanTro2_chr5:24053350-24053410 pos chr5:24053350-24053410 chr5 NC_006472.2 24053350 24053410
7 534 1812 PanTro2_chr5:20736349-20736409 pos chr5:20736349-20736409 chr5 NC_006472.2 20736349 20736409
8 534 1810 PanTro2_chr4:11465873-11465928 pos chr4:11465873-11465928 chr4 NC_006471.2 11465873 11465928
9 534 1808 PanTro2_chr4:171185245-171185290 pos chr4:171185245-171185290 chr4 NC_006471.2 171185245 171185290
10 534 1806 PanTro2_chr4:3876642-3876690 pos chr4:3876642-3876690 chr4 NC_006471.2 3876642 3876690
11 534 1804 PanTro2_chr4:137553361-137553416 pos chr4:137553361-137553416 chr4 NC_006471.2 137553361 137553416
12 534 1802 PanTro2_chr4:98927774-98927831 pos chr4:98927774-98927831 chr4 NC_006471.2 98927774 98927831
13 534 1800 PanTro2_chr4:132452505-132452565 pos chr4:132452505-132452565 chr4 NC_006471.2 132452505 132452565
14 534 1798 PanTro2_chr4:112824969-112825021 pos chr4:112824969-112825021 chr4 NC_006471.2 112824969 112825021
15 534 1796 PanTro2_chr4:156380104-156380155 pos chr4:156380104-156380155 chr4 NC_006471.2 156380104 156380155
16 534 1794 PanTro2_chr4:104834616-104834674 pos chr4:104834616-104834674 chr4 NC_006471.2 104834616 104834674
17 534 1792 PanTro2_chr4:129087063-129087123 pos chr4:129087063-129087123 chr4 NC_006471.2 129087063 129087123
18 534 1790 PanTro2_chr3:157821477-157821533 pos chr3:157821477-157821533 chr3 NC_006490.2 157821477 157821533
19 534 1788 PanTro2_chr4:191505272-191505328 pos chr4:191505272-191505328 chr4 NC_006471.2 191505272 191505328
20 534 1786 PanTro2_chr3:169640661-169640716 pos chr3:169640661-169640716 chr3 NC_006490.2 169640661 169640716

Total number of rows: 974016

Table truncated, full table size 109958 Kbytes.




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