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Platform GPL16854

Query DataSets for GPL16854

Status

Public on Apr 21, 2013

Title

Agilent-039363 Schizosaccharomyces pombe 44K oligo array Ozan_C10S

Technology type

in situ oligonucleotide

Distribution

custom-commercial

Organism

Schizosaccharomyces pombe

Manufacturer

Agilent Technologies

Manufacture protocol

see manufacturer's web site at http://www.agilent.com/

Description

Regions of meiotic islands and ura4 locus were added to the original C10B design. The regions were demarcated by Ozan, and array was designed by Sameet

Arrays of this design have barcodes that begin with 16039363 or 2539363.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

Submission date

Mar 21, 2013

Last update date

Apr 21, 2013

Contact name

Shiv Grewal

Phone

2407607553

Organization name

NCI

Department

LBMB

Lab

Shiv Grewal

Street address

NCI bldg 37 Rm 6068 9000 Rockville Pike

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Samples (2)

GSM1103391, GSM1103392

Series (1)

HDAC mediated suppression of histone turnover promotes epigenetic stability of heterochromatin

Data table header descriptions
ID	Agilent feature number
COL	Column
ROW	Row
SEQUENCE
PROBE_ID
CONTROL_TYPE	Control type
GENE_SYMBOL	Gene Symbol
ACCESSION_STRING	Accession String
CHROMOSOMAL_LOCATION	Chromosomal Location (based on Apr 2007 assembly)
SPOT_ID	Spot identifier

Data table
ID	COL	ROW	SEQUENCE	PROBE_ID	CONTROL_TYPE	GENE_SYMBOL	ACCESSION_STRING	CHROMOSOMAL_LOCATION	SPOT_ID
1	266	170		DarkCorner	pos				--DarkCorner
2	266	168		DarkCorner	pos				--DarkCorner
3	266	166		DarkCorner	pos				--DarkCorner
4	266	164		DarkCorner	pos				--DarkCorner
5	266	162		DarkCorner	pos				--DarkCorner
6	266	160		DarkCorner	pos				--DarkCorner
7	266	158		DarkCorner	pos				--DarkCorner
8	266	156		DarkCorner	pos				--DarkCorner
9	266	154		DarkCorner	pos				--DarkCorner
10	266	152		DarkCorner	pos				--DarkCorner
11	266	150		DarkCorner	pos				--DarkCorner
12	266	148	GTTCTTCAGGTTGTATCCTGCGTGGTATCGCTTGAGCCCTCAAAATGGGCTTCGGGTCTA	OA_C10S_28759	FALSE	SPBC2F12.12c	chr2_1715891_1715950_R	chr2:1715891-1715950
13	266	146	AAATTAGATAAAAAAAATTTAAATAATAATAAATCCATGTATTATTAAATGCTTTCTCAT	OA_C10S_05483	FALSE		chr1_1834930_1834990_R	chr1:1834930-1834990
14	266	144		NA	ignore				--ignore
15	266	142	AAAAAATGTTTATAGAGAACAAAAGTGGAACTTTTAAATCTGACCGATCTGTGTTTATTT	OA_C10S_37245	FALSE		mat_17751_17810_Rf	chr4:17751-17810
16	266	140	TTGTGATATGAGTTTCAAGTTTTGATCTTTTTTAAAATCGTCATCAATCATTTCATCATT	OA_C10S_21261	FALSE		chr2_1640911_1640970_Rm	chr2:1640911-1640970
17	266	138	TTTTATATACGTAGACCTTTATCCAATTTCAAGAAATTTTTATATAATTAAAAGAAACTT	OA_C10S_34741	FALSE		chr2_1775711_1775770_R	chr2:1775711-1775770
18	266	136	CAGAGAGAGAGAGAGAGAGAGAAAAAGAAAAAAAAAAGGATTAAAAAGTAAAAGAAAAAG	OA_C10S_32206	FALSE		chr2_1750361_1750420	chr2:1750361-1750420
19	266	134	AACATTATTTACAACGGAAATTATCGACCATGTGATGTATAAATGAACACAATTCAGTCG	OA_C10S_20444	FALSE		chr2_1632741_1632800f	chr2:1632741-1632800
20	266	132	ATACTGTCCATCGTTACATGCTCAGCTCCACTAACATAGTAAGTTATTGGCGAGTACAAT	OA_C10S_10596	FALSE	SPBC83.12	chr2_1533211_1533270_R	chr2:1533211-1533270

Total number of rows: 45220

Table truncated, full table size 5614 Kbytes.

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML

Supplementary data files not provided

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