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Platform GPL16733 Query DataSets for GPL16733
Status Public on Mar 05, 2013
Title NimbleGen Mus musculus 2.1M 2007-09-21_MM8_Deluxe_Promoter_HX1 tiling design
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mus musculus
Manufacturer NimbleGen Systems Inc.
Manufacture protocol http://www.nimblegen.com
Catalog number 05542332001
 
Description Promoter tiling array using NimbleGen platform. Mouse MM8 build. Probe length 50-75bp isothermal. Tiled regions are 8200bp upstream and 3000bp downstream of 5 prime ends of genes as annotated in MM8.
 
Web link http://www.nimblegen.com/products/chip/promoter.html
Submission date Feb 28, 2013
Last update date Mar 05, 2013
Contact name Xinxian Deng
E-mail(s) dengx2@u.washington.edu
Organization name University of Washington
Department Laboratory Medicine and Pathology
Lab HSB C526
Street address 1959 NE Pacific St.
City Seattle
State/province WA
ZIP/Postal code 98195
Country USA
 
Samples (14) GSM1092225, GSM1092226, GSM1092227, GSM1092228, GSM1092231, GSM1092232 
Series (4)
GSE30761 Mammalian X upregulation
GSE44835 Upregulation of the mammalian X chromosome is associated with enhanced transcription initiation, MOF-mediated H4K16 acetylation, and longer RNA half-life
GSE59779 Studies of regulation of mouse X inactivation and genes escaping XCI

Data table header descriptions
ID
PROBE_ID
SEQ_ID
CHROMOSOME
RANGE_GB
SPOT_ID
RANGE_START Start position of the probe within chromosome
RANGE_END End position of the probe within chromosome
SEQUENCE DNA sequence synthesized on the array

Data table
ID PROBE_ID SEQ_ID CHROMOSOME RANGE_GB SPOT_ID RANGE_START RANGE_END SEQUENCE
1 CHR01FS003521489 chr1:3521465-3522165 chr1 NC_000067.4 3521489 3521542 AATATCCTATAAGATTGGCACAGAAAGCACACTTGAGTTAGTGAGGACTTCAGG
2 CHR01FS003521569 chr1:3521465-3522165 chr1 NC_000067.4 3521569 3521619 TGTGCAGGTGGACACCTAGGATTGCATGATAGCTTGAAAGGATTAAATCTC
3 CHR01FS003521689 chr1:3521465-3522165 chr1 NC_000067.4 3521689 3521738 GTGGTGGCCTATTACCTCGCGGCACCGCAGCCTGGCACCCACCCGGCTGG
4 CHR01FS003521789 chr1:3521465-3522165 chr1 NC_000067.4 3521789 3521838 GGCAGCGGGAGAGTGTCTGAGCTCCCCGCGGGGAGGCTGGACAGCCCTGG
5 CHR01FS003521874 chr1:3521465-3522165 chr1 NC_000067.4 3521874 3521923 TCATGGCATCGTTGGCAGACCGGGTCTGGGGCAACAGGCGCATCGCCGCC
6 CHR01FS003521969 chr1:3521465-3522165 chr1 NC_000067.4 3521969 3522018 AACAAATGGATCTATGTACACCACGCTTCCCCAAGATGAGCCTGACACTG
7 CHR01FS003522069 chr1:3521465-3522165 chr1 NC_000067.4 3522069 3522118 CATCTTTGCCCTTAAAAATCTGCCGCTCTCCAAGCTCCTCCTCCTGGCCC
8 CHR01FS003658583 chr1:3658579-3673235 chr1 NC_000067.4 3658583 3658632 CAGCCAGCAACACAATTGTCTGACAGACTGTGGTCTCCTTTATATGTTCA
9 CHR01FS003658683 chr1:3658579-3673235 chr1 NC_000067.4 3658683 3658736 GACCCAGTGGATACTGTCTCATTGTAGTATTTTTCTCCACGTTTTCCTACTTCT
10 CHR01FS003658798 chr1:3658579-3673235 chr1 NC_000067.4 3658798 3658853 GATTCAAAAGTCTAATAAATGTTACAATTAAAATGACTTCTTCAGTACACTGAGTT
11 CHR01FS003658883 chr1:3658579-3673235 chr1 NC_000067.4 3658883 3658944 ATCTGTAGGAGGCACACACAGGTGTTTAGTGACAATAACTAATAAGCACTTATATTGCTGAT
12 CHR01FS003658993 chr1:3658579-3673235 chr1 NC_000067.4 3658993 3659045 CAAGTTACCAAATAGGTTGATAAGTTTTTGGTACCACACTGCTAGATTAAAAC
13 CHR01FS003659103 chr1:3658579-3673235 chr1 NC_000067.4 3659103 3659155 GTTCTTCCTCATAATTAAAGAATACCCAACTTGGACCTTCCAATACTTTTCTG
14 CHR01FS003659198 chr1:3658579-3673235 chr1 NC_000067.4 3659198 3659256 TCTCCCAGGGTCTGAAATATATATGTTTCCACATCAATTTGTCTAACAGTACACCATGC
15 CHR01FS003659283 chr1:3658579-3673235 chr1 NC_000067.4 3659283 3659332 AATACGTTCTAAGGCAGGAGGTCTAGGGCCATGCTCACCCTGCTTTACAG
16 CHR01FS003659383 chr1:3658579-3673235 chr1 NC_000067.4 3659383 3659435 CAAGGACGCTGACTTCTGCCAGAAAGAGAAGTGTGTGAATCTATGTTACAAAT
17 CHR01FS003659528 chr1:3658579-3673235 chr1 NC_000067.4 3659528 3659578 CAAAAAGCATACAGGTGAAAGTACAGAGTACATGCCAGTATCAGCCCACTT
18 CHR01FS003659613 chr1:3658579-3673235 chr1 NC_000067.4 3659613 3659666 ACTAAATTGCTTTAAAGCCAAGGAGTCTCTAGGGTAACAGCCTCTATATTTTTC
19 CHR01FS003659728 chr1:3658579-3673235 chr1 NC_000067.4 3659728 3659785 AAAAGAACAGATTTCTGAGCATATTGTCCCACCACATTCCTACATCTGTGCAGTAATG
20 CHR01FS003659828 chr1:3658579-3673235 chr1 NC_000067.4 3659828 3659887 ACTTCAGTGTATAAGCAAAGTGACAACTATGTAAAGAGACTTGGTGGATCAAGTGAGAAG

Total number of rows: 2138023

Table truncated, full table size 290852 Kbytes.




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