NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Platform GPL16500 Query DataSets for GPL16500
Status Public on Jan 11, 2013
Title [BovGene-1_0-st] Bovine Gene 1.0 ST Array [transcript (gene) version]
Technology type in situ oligonucleotide
Distribution commercial
Organism Bos taurus
Manufacturer Affymetrix
Manufacture protocol See manufacturer's web site
 
Description Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://www.ncbi.nlm.nih.gov/projects/geo/info/geo_affy.html

Jan 11, 2013: annotation table updated with netaffx build 33
 
Web link http://www.affymetrix.com/support/technical/byproduct.affx?product=modelorg_1_1_array
http://www.affymetrix.com/support/technical/libraryfilesmain.affx
Submission date Jan 11, 2013
Last update date Nov 27, 2015
Organization Affymetrix, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (563) GSM1464916, GSM1464917, GSM1464918, GSM1464919, GSM1464920, GSM1464921 
Series (31)
GSE60098 Influence of Sex on Basal and Dickkopf-1 Regulated Gene Expression in the Bovine Morula
GSE62382 Neonatal testis transcriptome profiles differ among calves born to cows supplemented with different forms of dietary selenium throughout gestation
GSE63969 Steroid-dependent regulation of bovine oviductal epithelial cells: a transcriptomal analysis of mRNA and miRNA
Relations
Alternative to GPL21098 (Alternative CDF [bovgene10st_Bt_ENTREZG, 19.0.0])
Alternative to GPL21176 (Alternative CDF [bovgene10st_Bt_ENTREZG, 16.0.0])

Data table header descriptions
ID transcript_cluster_id
probeset_id Unique identifier for the probe set.
SPOT_ID genomic location of the transcript cluster in the version of the genome assembly used at annotation time. Coordinates are standard 1-based (length=stop-start+1).
seqname chromosome number
strand (+|-)
start (integer). Coordinates are standard 1-based (length=stop-start+1).
stop (integer). Coordinates are standard 1-based (length=stop-start+1).
total_probes Total number of probes contained by this transcript cluster.
gene_assignment Gene name(s) for each assigned mRNA for mRNAs that corresponds to known genes. (multipart)
mrna_assignment Public mRNAs that should be detected by this probe set based on sequence alignment determined at the time of the current NetAffx annotation update. (multipart).
swissprot
unigene
GO_biological_process
GO_cellular_component
GO_molecular_function
pathway
protein_domains
crosshyb_type
category Array design category of the transcript cluster

Data table
ID probeset_id SPOT_ID seqname strand start stop total_probes gene_assignment mrna_assignment swissprot unigene GO_biological_process GO_cellular_component GO_molecular_function pathway protein_domains crosshyb_type category
12678162 12678162 chr1(+):52363681-52364912 chr1 + 52363681 52364912 12 NM_001105490 // CCDC54 // coiled-coil domain containing 54 // --- // 100125920 /// ENSBTAT00000063186 // CCDC54 // coiled-coil domain containing 54 // --- // 100125920 /// BC114016 // CCDC54 // coiled-coil domain containing 54 // --- // 100125920 NM_001105490 // RefSeq // Bos taurus coiled-coil domain containing 54 (CCDC54), mRNA. // chr1 // 100 // 100 // 12 // 12 // 0 /// ENSBTAT00000063186 // ENSEMBL // cdna:known chromosome:UMD3.1:1:52363681:52364911:1 gene:ENSBTAG00000046313 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 12 // 12 // 0 /// BC114016 // GenBank // Bos taurus coiled-coil domain containing 54, mRNA (cDNA clone MGC:137076 IMAGE:8009238), complete cds. // chr1 // 100 // 100 // 12 // 12 // 0 BC114016 // Q29RU3 --- --- --- --- --- --- --- main
12678166 12678166 chr1(+):123009129-123060130 chr1 + 123009129 123060130 8 NM_001105506 // PLSCR1 // phospholipid scramblase 1 // --- // 100125943 /// NM_001105506 // PLSCR1 // phospholipid scramblase 1 // --- // 100125943 /// BC149269 // PLSCR1 // phospholipid scramblase 1 // --- // 100125943 /// BC149269 // PLSCR1 // phospholipid scramblase 1 // --- // 100125943 /// ENSBTAT00000044362 // PLSCR1 // phospholipid scramblase 1 // --- // 100125943 /// ENSBTAT00000044362 // PLSCR1 // phospholipid scramblase 1 // --- // 100125943 NM_001105506 // RefSeq // Bos taurus phospholipid scramblase 1 (PLSCR1), mRNA. // chr1 // 100 // 100 // 16 // 16 // 0 /// NM_001105506 // RefSeq // Bos taurus phospholipid scramblase 1 (PLSCR1), mRNA. // chr1 // 100 // 100 // 8 // 8 // 0 /// BC149269 // GenBank // Bos taurus phospholipid scramblase 1, mRNA (cDNA clone MGC:148322 IMAGE:8044257), complete cds. // chr1 // 100 // 100 // 16 // 16 // 0 /// BC149269 // GenBank // Bos taurus phospholipid scramblase 1, mRNA (cDNA clone MGC:148322 IMAGE:8044257), complete cds. // chr1 // 100 // 100 // 8 // 8 // 0 /// ENSBTAT00000044362 // ENSEMBL // cdna:known chromosome:UMD3.1:1:123009129:123060090:1 gene:ENSBTAG00000031306 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 16 // 16 // 0 /// ENSBTAT00000044362 // ENSEMBL // cdna:known chromosome:UMD3.1:1:123009129:123060090:1 gene:ENSBTAG00000031306 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 8 // 8 // 0 /// GENSCAN00000019585 // ENSEMBL // cdna:genscan chromosome:UMD3.1:1:122926147:123270084:1 transcript_biotype:protein_coding // chr1 // 100 // 50 // 4 // 4 // 0 BC149269 // A6QPD9 /// BC149269 // A6QPD9 --- --- --- --- --- ENSBTAT00000044362 // Pfam // IPR005552 // Scramblase /// ENSBTAT00000044362 // Pfam // IPR005552 // Scramblase --- main
12678175 12678175 chr1(+):41953493-41956764 chr1 + 41953493 41956764 3 ENSBTAT00000032401 // LOC100137810 // uncharacterized LOC100137810 // --- // 100137810 ENSBTAT00000032401 // ENSEMBL // cdna:known chromosome:UMD3.1:1:41955547:41957126:1 gene:ENSBTAG00000023668 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 4 // 4 // 0 --- --- --- --- --- --- ENSBTAT00000032401 // Pfam // IPR000276 // GPCR, rhodopsin-like, 7TM --- main
12678178 12678178 chr1(+):74466956-74470640 chr1 + 74466956 74470640 12 --- BC142078 // GenBank // Bos taurus cDNA clone IMAGE:8066625. // chr1 // 100 // 100 // 24 // 24 // 0 /// BC142078 // GenBank // Bos taurus cDNA clone IMAGE:8066625. // chr1 // 100 // 100 // 12 // 12 // 0 --- --- --- --- --- --- --- --- main
12678183 12678183 chr1(+):4955364-4956425 chr1 + 4955364 4956425 7 XM_002684598 // KRTAP24-1 // keratin associated protein 24-1 // --- // 100138320 /// ENSBTAT00000063306 // KRTAP24-1 // keratin associated protein 24-1 // --- // 100138320 XM_002684598 // RefSeq // PREDICTED: Bos taurus keratin associated protein 24-1 (KRTAP24-1), mRNA. // chr1 // 100 // 100 // 7 // 7 // 0 /// ENSBTAT00000063306 // ENSEMBL // cdna:known chromosome:UMD3.1:1:4955536:4956408:1 gene:ENSBTAG00000046384 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 7 // 7 // 0 /// GENSCAN00000005146 // ENSEMBL // cdna:genscan chromosome:UMD3.1:1:4955364:4956326:1 transcript_biotype:protein_coding // chr1 // 100 // 100 // 8 // 8 // 0 /// GENSCAN00000005146 // ENSEMBL // cdna:genscan chromosome:UMD3.1:1:4955364:4956326:1 transcript_biotype:protein_coding // chr1 // 100 // 57 // 4 // 4 // 0 --- --- --- --- --- --- ENSBTAT00000063306 // Pfam // IPR007951 // PMG --- main
12678186 12678186 chr1(+):65718095-65720164 chr1 + 65718095 65720164 9 --- GENSCAN00000043173 // ENSEMBL // cdna:genscan chromosome:UMD3.1:1:65706905:65720114:1 transcript_biotype:protein_coding // chr1 // 100 // 89 // 8 // 8 // 0 --- --- --- --- --- --- --- --- main
12678189 12678189 chr1(+):84326119-84525728 chr1 + 84326119 84525728 13 XM_002684886 // MCF2L2 // MCF.2 cell line derived transforming sequence-like 2 // --- // 100139125 /// ENSBTAT00000013720 // MCF2L2 // MCF.2 cell line derived transforming sequence-like 2 // --- // 100139125 XM_002684886 // RefSeq // PREDICTED: Bos taurus MCF.2 cell line derived transforming sequence-like 2 (MCF2L2), mRNA. // chr1 // 100 // 100 // 13 // 13 // 0 /// ENSBTAT00000013720 // ENSEMBL // cdna:known chromosome:UMD3.1:1:84324970:84525526:1 gene:ENSBTAG00000010394 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 13 // 13 // 0 /// GENSCAN00000004454 // ENSEMBL // cdna:genscan chromosome:UMD3.1:1:84444265:84509466:1 transcript_biotype:protein_coding // chr1 // 100 // 77 // 10 // 10 // 0 /// GENSCAN00000004454 // ENSEMBL // cdna:genscan chromosome:UMD3.1:1:84444265:84509466:1 transcript_biotype:protein_coding // chr1 // 100 // 46 // 6 // 6 // 0 /// GENSCAN00000004450 // ENSEMBL // cdna:genscan chromosome:UMD3.1:1:84329580:84415400:1 transcript_biotype:protein_coding // chr1 // 100 // 38 // 5 // 5 // 0 --- --- --- --- --- --- ENSBTAT00000013720 // Pfam // IPR000219 // Dbl homology (DH) domain /// ENSBTAT00000013720 // Pfam // IPR002017 // Spectrin repeat --- main
12678219 12678219 chr1(+):64552411-64559966 chr1 + 64552411 64559966 12 --- ENSBTAT00000018814 // ENSEMBL // cdna:known chromosome:UMD3.1:1:64552516:64557030:1 gene:ENSBTAG00000014157 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 22 // 22 // 0 /// ENSBTAT00000018814 // ENSEMBL // cdna:known chromosome:UMD3.1:1:64552516:64557030:1 gene:ENSBTAG00000014157 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 92 // 11 // 11 // 0 --- --- --- --- --- --- --- --- main
12678223 12678223 chr1(+):76850454-77001495 chr1 + 76850454 77001495 11 ENSBTAT00000066200 // GMNC // geminin coiled-coil domain containing // --- // 100139788 /// ENSBTAT00000066200 // GMNC // geminin coiled-coil domain containing // --- // 100139788 /// ENSBTAT00000066200 // GMNC // geminin coiled-coil domain containing // --- // 100139788 ENSBTAT00000066200 // ENSEMBL // cdna:known chromosome:UMD3.1:1:76996347:77001495:1 gene:ENSBTAG00000023593 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 55 // 8 // 6 // 0 /// ENSBTAT00000066200 // ENSEMBL // cdna:known chromosome:UMD3.1:1:76996347:77001495:1 gene:ENSBTAG00000023593 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 36 // 4 // 4 // 0 /// ENSBTAT00000066200 // ENSEMBL // cdna:known chromosome:UMD3.1:1:76996347:77001495:1 gene:ENSBTAG00000023593 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 27 // 4 // 3 // 0 --- --- --- --- --- --- --- --- main
12678232 12678232 chr1(+):158171126-158172898 chr1 + 158171126 158172898 9 XR_083440 // LOC100139888 // heterogeneous nuclear ribonucleoproteins C1/C2-like // --- // 100139888 XR_083440 // RefSeq // PREDICTED: Bos taurus heterogeneous nuclear ribonucleoproteins C1/C2-like (LOC100139888), miscRNA. // chr1 // 100 // 78 // 7 // 7 // 0 /// GENSCAN00000035439 // ENSEMBL // cdna:genscan chromosome:UMD3.1:1:158120993:158172724:1 transcript_biotype:protein_coding // chr1 // 100 // 56 // 5 // 5 // 0 /// GENSCAN00000035439 // ENSEMBL // cdna:genscan chromosome:UMD3.1:1:158120993:158172724:1 transcript_biotype:protein_coding // chr1 // 100 // 33 // 3 // 3 // 0 --- --- --- --- --- --- --- --- main
12678235 12678235 chr1(+):95201065-95206791 chr1 + 95201065 95206791 8 ENSBTAT00000052461 // ZSCAN23 // zinc finger and SCAN domain containing 23 // --- // --- /// ENSBTAT00000052461 // ZSCAN23 // zinc finger and SCAN domain containing 23 // --- // --- /// XM_003583911 // LOC100851432 // zinc finger and SCAN domain-containing protein 23-like // --- // 100851432 /// XM_003583911 // LOC100851432 // zinc finger and SCAN domain-containing protein 23-like // --- // 100851432 ENSBTAT00000052461 // ENSEMBL // cdna:known chromosome:UMD3.1:1:95203732:95206770:1 gene:ENSBTAG00000037965 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 8 // 8 // 0 /// ENSBTAT00000052461 // ENSEMBL // cdna:known chromosome:UMD3.1:1:95203732:95206770:1 gene:ENSBTAG00000037965 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 50 // 4 // 4 // 0 /// XM_003583911 // RefSeq // PREDICTED: Bos taurus zinc finger and SCAN domain-containing protein 23-like (LOC100851432), mRNA. // chr1 // 100 // 75 // 6 // 6 // 0 /// XM_003583911 // RefSeq // PREDICTED: Bos taurus zinc finger and SCAN domain-containing protein 23-like (LOC100851432), mRNA. // chr1 // 100 // 38 // 3 // 3 // 0 /// GENSCAN00000015531 // ENSEMBL // cdna:genscan chromosome:UMD3.1:1:95205052:95206791:1 transcript_biotype:protein_coding // chr1 // 100 // 100 // 8 // 8 // 0 /// GENSCAN00000015531 // ENSEMBL // cdna:genscan chromosome:UMD3.1:1:95205052:95206791:1 transcript_biotype:protein_coding // chr1 // 100 // 50 // 4 // 4 // 0 --- --- --- --- --- --- ENSBTAT00000052461 // Pfam // IPR003309 // Transcription regulator SCAN /// ENSBTAT00000052461 // Pfam // IPR007087 // Zinc finger, C2H2 /// ENSBTAT00000052461 // Pfam // IPR003309 // Transcription regulator SCAN /// ENSBTAT00000052461 // Pfam // IPR007087 // Zinc finger, C2H2 --- main
12678240 12678240 chr1(+):82540596-82550283 chr1 + 82540596 82550283 6 XM_002684871 // LOC100140254 // tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide-like // --- // 100140254 XM_002684871 // RefSeq // PREDICTED: Bos taurus tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide-like (LOC100140254), mRNA. // chr1 // 100 // 100 // 6 // 6 // 0 /// GENSCAN00000007301 // ENSEMBL // cdna:genscan chromosome:UMD3.1:1:82531895:82550013:1 transcript_biotype:protein_coding // chr1 // 100 // 100 // 6 // 6 // 0 --- --- --- --- --- --- --- --- main
12678244 12678244 chr1(+):96642034-96642735 chr1 + 96642034 96642735 3 --- GENSCAN00000044354 // ENSEMBL // cdna:genscan chromosome:UMD3.1:1:96601847:96675917:1 transcript_biotype:protein_coding // chr1 // 100 // 100 // 3 // 3 // 0 /// NM_001205978 // RefSeq // Bos taurus Kruppel-like factor 3 (basic) (KLF3), mRNA. // chr1 // 33 // 100 // 5 // 15 // 1 /// NM_001205978 // RefSeq // Bos taurus Kruppel-like factor 3 (basic) (KLF3), mRNA. // chr1 // 33 // 100 // 3 // 9 // 1 /// NM_001205978 // RefSeq // Bos taurus Kruppel-like factor 3 (basic) (KLF3), mRNA. // chr1 // 33 // 100 // 1 // 3 // 1 /// ENSBTAT00000023232 // ENSEMBL // cdna:known chromosome:UMD3.1:6:59593804:59610697:1 gene:ENSBTAG00000017488 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 33 // 100 // 5 // 15 // 1 /// ENSBTAT00000023232 // ENSEMBL // cdna:known chromosome:UMD3.1:6:59593804:59610697:1 gene:ENSBTAG00000017488 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 33 // 100 // 3 // 9 // 1 --- --- --- --- --- --- --- --- main
12678246 12678246 chr1(+):59371394-59387525 chr1 + 59371394 59387525 8 XM_002684782 // TIGIT // T cell immunoreceptor with Ig and ITIM domains // --- // 100140801 /// ENSBTAT00000015813 // TIGIT // T cell immunoreceptor with Ig and ITIM domains // --- // 100140801 /// XM_002684782 // TIGIT // T cell immunoreceptor with Ig and ITIM domains // --- // 100140801 /// ENSBTAT00000015813 // TIGIT // T cell immunoreceptor with Ig and ITIM domains // --- // 100140801 XM_002684782 // RefSeq // PREDICTED: Bos taurus T cell immunoreceptor with Ig and ITIM domains (TIGIT), mRNA. // chr1 // 100 // 100 // 16 // 16 // 0 /// ENSBTAT00000015813 // ENSEMBL // cdna:known chromosome:UMD3.1:1:59371394:59387525:1 gene:ENSBTAG00000011921 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 16 // 16 // 0 /// XM_002684782 // RefSeq // PREDICTED: Bos taurus T cell immunoreceptor with Ig and ITIM domains (TIGIT), mRNA. // chr1 // 100 // 100 // 8 // 8 // 0 /// ENSBTAT00000015813 // ENSEMBL // cdna:known chromosome:UMD3.1:1:59371394:59387525:1 gene:ENSBTAG00000011921 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 8 // 8 // 0 /// GENSCAN00000037586 // ENSEMBL // cdna:genscan chromosome:UMD3.1:1:59368218:59375625:1 transcript_biotype:protein_coding // chr1 // 100 // 75 // 6 // 6 // 0 --- --- --- --- --- --- ENSBTAT00000015813 // Pfam // IPR013106 // Immunoglobulin V-set /// ENSBTAT00000015813 // Pfam // IPR013151 // Immunoglobulin /// ENSBTAT00000015813 // Pfam // IPR013106 // Immunoglobulin V-set /// ENSBTAT00000015813 // Pfam // IPR013151 // Immunoglobulin --- main
12678251 12678251 chr1(+):4893265-4895000 chr1 + 4893265 4895000 10 --- BC119911 // GenBank // Bos taurus cDNA clone IMAGE:8284388, partial cds. // chr1 // 100 // 100 // 20 // 20 // 0 /// BC119911 // GenBank // Bos taurus cDNA clone IMAGE:8284388, partial cds. // chr1 // 100 // 100 // 10 // 10 // 0 BC119911 // Q0VCZ9 /// BC119911 // Q0VCZ9 --- --- --- --- --- --- --- main
12678254 12678254 chr1(+):45021286-45044430 chr1 + 45021286 45044430 1 --- GENSCAN00000029718 // ENSEMBL // cdna:genscan scaffold:UMD3.1:GJ057939.1:942:1090:1 transcript_biotype:protein_coding // chr1 // 100 // 100 // 3 // 3 // 0 --- --- --- --- --- --- --- --- main
12678266 12678266 chr1(+):93789331-93798359 chr1 + 93789331 93798359 5 XM_002683605 // LOC100294973 // aTP-binding cassette, sub-family C (CFTR/MRP), member 4-like // --- // 100294973 /// XM_002683605 // LOC100294973 // aTP-binding cassette, sub-family C (CFTR/MRP), member 4-like // --- // 100294973 XM_002683605 // RefSeq // PREDICTED: Bos taurus aTP-binding cassette, sub-family C (CFTR/MRP), member 4-like (LOC100294973), mRNA. // chr1 // 100 // 100 // 10 // 10 // 0 /// XM_002683605 // RefSeq // PREDICTED: Bos taurus aTP-binding cassette, sub-family C (CFTR/MRP), member 4-like (LOC100294973), mRNA. // chr1 // 100 // 100 // 5 // 5 // 0 --- --- --- --- --- --- --- --- main
12678271 12678271 chr1(+):77415804-77436595 chr1 + 77415804 77436595 8 ENSBTAT00000017899 // TMEM207 // transmembrane protein 207 // --- // 100295666 /// XM_002702440 // TMEM207 // transmembrane protein 207 // --- // 100295666 /// ENSBTAT00000017899 // TMEM207 // transmembrane protein 207 // --- // 100295666 /// ENSBTAT00000017899 // TMEM207 // transmembrane protein 207 // --- // 100295666 /// XM_002702440 // TMEM207 // transmembrane protein 207 // --- // 100295666 /// XM_002702440 // TMEM207 // transmembrane protein 207 // --- // 100295666 ENSBTAT00000017899 // ENSEMBL // cdna:known chromosome:UMD3.1:1:77415804:77436583:1 gene:ENSBTAG00000013456 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 16 // 14 // 0 /// XM_002702440 // RefSeq // PREDICTED: Bos taurus transmembrane protein 207 (TMEM207), mRNA. // chr1 // 100 // 100 // 14 // 12 // 0 /// ENSBTAT00000017899 // ENSEMBL // cdna:known chromosome:UMD3.1:1:77415804:77436583:1 gene:ENSBTAG00000013456 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 8 // 8 // 0 /// ENSBTAT00000017899 // ENSEMBL // cdna:known chromosome:UMD3.1:1:77415804:77436583:1 gene:ENSBTAG00000013456 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 88 // 8 // 7 // 0 /// XM_002702440 // RefSeq // PREDICTED: Bos taurus transmembrane protein 207 (TMEM207), mRNA. // chr1 // 100 // 88 // 7 // 7 // 0 /// XM_002702440 // RefSeq // PREDICTED: Bos taurus transmembrane protein 207 (TMEM207), mRNA. // chr1 // 100 // 75 // 7 // 6 // 0 /// GENSCAN00000028901 // ENSEMBL // cdna:genscan chromosome:UMD3.1:1:77427716:77436466:1 transcript_biotype:protein_coding // chr1 // 100 // 50 // 4 // 4 // 0 --- --- --- --- --- --- --- --- main
12678279 12678279 chr1(+):152898001-152899476 chr1 + 152898001 152899476 6 --- GENSCAN00000003915 // ENSEMBL // cdna:genscan chromosome:UMD3.1:1:152898001:152930229:1 transcript_biotype:protein_coding // chr1 // 100 // 100 // 10 // 10 // 0 /// GENSCAN00000003915 // ENSEMBL // cdna:genscan chromosome:UMD3.1:1:152898001:152930229:1 transcript_biotype:protein_coding // chr1 // 100 // 83 // 5 // 5 // 0 --- --- --- --- --- --- --- --- main
12678281 12678281 chr1(+):4693604-4703336 chr1 + 4693604 4703336 5 XM_002702416 // LOC100296223 // uncharacterized LOC100296223 // --- // 100296223 /// XM_002702416 // LOC100296223 // uncharacterized LOC100296223 // --- // 100296223 XM_002702416 // RefSeq // PREDICTED: Bos taurus uncharacterized LOC100296223 (LOC100296223), mRNA. // chr1 // 100 // 100 // 10 // 10 // 0 /// XM_002702416 // RefSeq // PREDICTED: Bos taurus uncharacterized LOC100296223 (LOC100296223), mRNA. // chr1 // 100 // 100 // 5 // 5 // 0 /// GENSCAN00000005171 // ENSEMBL // cdna:genscan chromosome:UMD3.1:1:4693604:4713438:1 transcript_biotype:protein_coding // chr1 // 100 // 100 // 25 // 25 // 0 /// GENSCAN00000005171 // ENSEMBL // cdna:genscan chromosome:UMD3.1:1:4693604:4713438:1 transcript_biotype:protein_coding // chr1 // 100 // 100 // 15 // 15 // 0 /// GENSCAN00000005171 // ENSEMBL // cdna:genscan chromosome:UMD3.1:1:4693604:4713438:1 transcript_biotype:protein_coding // chr1 // 100 // 100 // 5 // 5 // 0 --- --- --- --- --- --- --- --- main

Total number of rows: 26773

Table truncated, full table size 477516 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap