GEO help: Mouse over screen elements for information.
Status
Public on Nov 28, 2012
Title
NimbleGen mouse DNA Methylation 3x720K CpG Island Plus RefSeq Promoter Arrays
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Mus musculus Manufacturer
NimbleGen
Manufacture protocol
see manufacturer's web site
Description
Format: 3X720K
Submission date
Jun 29, 2012
Last update date
Jun 29, 2012
Contact name
Xiwei Wu
E-mail(s)
xwu@coh.org Organization name
City of Hope National Medical Center
Department
Computational and Quantitative Medicine
Street address
1500 E. Duarte Rd.
City
Duarte
State/province
CA
ZIP/Postal code
91010
Country
USA
Samples (86)
GSM954262 , GSM954263 , GSM954264 , GSM954265 , GSM954266 , GSM954267
GSM954268 ,
GSM954269 ,
GSM1016834 ,
GSM1016835 ,
GSM1016836 ,
GSM1016837 ,
GSM1016838 ,
GSM1016839 ,
GSM1016840 ,
GSM1016841 ,
GSM1016842 ,
GSM1016843 ,
GSM1016844 ,
GSM1016845 ,
GSM1016846 ,
GSM1016847 ,
GSM1016848 ,
GSM1016849 ,
GSM1016850 ,
GSM1016851 ,
GSM1016852 ,
GSM1016853 ,
GSM1016854 ,
GSM1016855 ,
GSM1016856 ,
GSM1016857 ,
GSM1016858 ,
GSM1016859 ,
GSM1016860 ,
GSM1016861 ,
GSM1016862 ,
GSM1016863 ,
GSM1016864 ,
GSM1016865 ,
GSM1016866 ,
GSM1195525 ,
GSM1195526 ,
GSM1195527 ,
GSM1195528 ,
GSM1195529 ,
GSM1195530 ,
GSM1657492 ,
GSM1657493 ,
GSM1657494 ,
GSM1657495 ,
GSM1657496 ,
GSM1674303 ,
GSM1674304 ,
GSM1674305 ,
GSM1674306 ,
GSM2375100 ,
GSM2375101 ,
GSM2375102 ,
GSM2375103 ,
GSM2375104 ,
GSM2375105 ,
GSM2375106 ,
GSM2375107 ,
GSM2375108 ,
GSM2375109 ,
GSM2375110 ,
GSM2375111 ,
GSM2375112 ,
GSM2375113 ,
GSM2375114 ,
GSM3877879 ,
GSM3877880 ,
GSM3877881 ,
GSM3877882 ,
GSM3877883 ,
GSM3877884 ,
GSM3877885 ,
GSM3877886 ,
GSM3877887 ,
GSM3877888 ,
GSM3877889 ,
GSM3877890 ,
GSM3877891 ,
GSM3877892 ,
GSM3877893 Series (11)
GSE39034 Mammalian cells acquire epigenetic hallmarks of human cancer during immortalization
GSE41421 Whole DNA methylome profiling in mice exposed to secondhand smoke
GSE41422 Alterations of DNA methylome during chemical carcinogenesis
GSE49221 Epigenetic Basis of Regeneration: Analysis of Genomic DNA Methylation Profiles in the MRL/MpJ mouse
GSE67877 The methylome of murine foetal skin and scarless wound healing
GSE67878 The methylome and transcriptome of murine foetal skin and scarless wound healing
GSE68523 DNA methylation profiling of nenonatal murine hearts
GSE68524 The transcriptome and methylome of neonatal murine hearts
GSE89518 DNA methylation profiling of mouse tissues
GSE132577 Genome-wide promoter DNA Methylation Profiling of Hepatocellular Carcinomas Arising Either Spontaneously or due to Chronic Exposure to Ginkgo biloba Extract (GBE) in B6C3F1/N Mice [Methylation]
GSE132578 Hepatocellular Carcinomas Arising Either Spontaneously or due to Chronic Exposure to Ginkgo biloba Extract (GBE) in B6C3F1/N Mice
Data table header descriptions ID Probe ID
PROBE ID SEQ_ID Chromosomal location
RANGE_START Chromosomal start position of oligo
RANGE_END Chromosomal end position of oligo
SEQUENCE Sequence of oligo
RANGE_GB
Data table ID PROBE ID SEQ_ID RANGE_START RANGE_END SEQUENCE RANGE_GB 1
CHR01FS003521489
chr1:3521464-3522165
3521489
3521542
AATATCCTATAAGATTGGCACAGAAAGCACACTTGAGTTAGTGAGGACTTCAGG
NC_000067.5
2
CHR01FS003521564
chr1:3521464-3522165
3521564
3521613
GGTGATGTGCAGGTGGACACCTAGGATTGCATGATAGCTTGAAAGGATTA
NC_000067.5
3
CHR01FS003521689
chr1:3521464-3522165
3521689
3521738
GTGGTGGCCTATTACCTCGCGGCACCGCAGCCTGGCACCCACCCGGCTGG
NC_000067.5
4
CHR01FS003521789
chr1:3521464-3522165
3521789
3521838
GGCAGCGGGAGAGTGTCTGAGCTCCCCGCGGGGAGGCTGGACAGCCCTGG
NC_000067.5
5
CHR01FS003521874
chr1:3521464-3522165
3521874
3521923
TCATGGCATCGTTGGCAGACCGGGTCTGGGGCAACAGGCGCATCGCCGCC
NC_000067.5
6
CHR01FS003521969
chr1:3521464-3522165
3521969
3522018
AACAAATGGATCTATGTACACCACGCTTCCCCAAGATGAGCCTGACACTG
NC_000067.5
7
CHR01FS003522064
chr1:3521464-3522165
3522064
3522113
CTGGACATCTTTGCCCTTAAAAATCTGCCGCTCTCCAAGCTCCTCCTCCT
NC_000067.5
8
CHR01FS003522164
chr1:3521464-3522165
3522164
3522213
ACAACACCATAGGCATCTATCAGCTGGCCAAGGCCATGACCACGCCGGTT
NC_000067.5
9
CHR01FS003660593
chr1:3660577-3664539
3660593
3660642
ACAGTAGTAGTCTCTCTCAACCCCCACCCTGATACAGTACCTCCAGATTT
NC_000067.5
10
CHR01FS003660683
chr1:3660577-3664539
3660683
3660732
GATGCAAAAGGAGCAGGACGCAGACCTGTGTTTGCCGCTGGTCCGGGTGG
NC_000067.5
11
CHR01FS003660778
chr1:3660577-3664539
3660778
3660827
TGCTGGCGTTGGATGCTTGCCTCTGCGGCGTGGAAGGACGAACCTCGCCT
NC_000067.5
12
CHR01FS003660888
chr1:3660577-3664539
3660888
3660937
CTGGAGGTGGTGGTCGTGGAGCTGTCCTCGGTGCTGAAATCATGCACAAA
NC_000067.5
13
CHR01FS003660998
chr1:3660577-3664539
3660998
3661047
CCCAAACCACCAGCGCTGGCCACGCAGGTAGTAGTCCACCGCGAGCCAGA
NC_000067.5
14
CHR01FS003661098
chr1:3660577-3664539
3661098
3661147
AGGCAGTCCCACAGCGAGTAACGCCGCTGCTCCCTGCCCAGGCGCAGGCA
NC_000067.5
15
CHR01FS003661188
chr1:3660577-3664539
3661188
3661237
CCCGAGCCGCCCGAGCCCGCCGAGCCGCCGCTCCCCGCGCAGCAGCAGCA
NC_000067.5
16
CHR01FS003661293
chr1:3660577-3664539
3661293
3661342
TCCTCGGCTCCGGACCCCGACGGCAAGCCTGGAGCCAGTCCTTGCACAGA
NC_000067.5
17
CHR01FS003661398
chr1:3660577-3664539
3661398
3661447
ATCTTCAGCCTCCCGTCTGACTTAGCGGCCATGATGCCTCGGCAGCGGAG
NC_000067.5
18
CHR01FS003661478
chr1:3660577-3664539
3661478
3661527
TGCTGTCTCCTCCTCCCGCCACCTCCTCGCCTCGCCCTGGCTTCCTTCCC
NC_000067.5
19
CHR01FS003661593
chr1:3660577-3664539
3661593
3661642
CGCTGGGCCCGGCTAGCCGCACGCTCGGGACCCGCAGGAGCGCCGCCTGG
NC_000067.5
20
CHR01FS003661688
chr1:3660577-3664539
3661688
3661737
CTGACAGCCGCCCGCGCTCCGCGCCGGCCCGGCCCCGCGGCTGCAGCACG
NC_000067.5
713168 91769 Kbytes .Supplementary file Size Download File type/resource GPL15761_100718_MM9_CpG_Refseq_Prom_MeDIP.ndf.gz
46.8 Mb
(ftp) (http) NDF
GPL15761_100718_MM9_CpG_Refseq_Prom_MeDIP.pos.gz
6.1 Mb
(ftp) (http) POS
GPL15761_100718_MM9_CpG_Refseq_Prom_MeDIP_FT.txt.gz
19.7 Mb
(ftp) (http) TXT
GPL15761_100718_MM9_CpG_Refseq_Prom_MeDIP_FT_with_gpl_info.txt.gz
22.1 Mb
(ftp) (http) TXT
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