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| Status |
Public on Mar 09, 2012 |
| Title |
Nimblegen Homo sapiens HG18 Expression Array (12x135k) [gene-level] |
| Technology type |
in situ oligonucleotide |
| Distribution |
commercial |
| Organism |
Homo sapiens |
| Manufacturer |
NimbleGen |
| Manufacture protocol |
High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
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| |
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| Description |
This is a whole human genome array in 12-plex format provided by Roche Nimblegen. See manufacturer's website at http://www.nimblegen.com/.
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| Submission date |
Mar 09, 2012 |
| Last update date |
Mar 09, 2012 |
| Organization |
NimbleGen Systems, Inc. |
| E-mail(s) |
geo@ncbi.nlm.nih.gov
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| Phone |
608-218-7600
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| URL |
http://www.nimblegen.com/
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| Street address |
504 S. Rosa Road
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| City |
Madison |
| State/province |
WI |
| ZIP/Postal code |
53719 |
| Country |
USA |
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| Samples (68)
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GSM892324, GSM892325, GSM892326, GSM892327, GSM892328, GSM892329
GSM921457, GSM921458, GSM921459, GSM921460, GSM921461, GSM921462, GSM921463, GSM921464, GSM921465, GSM921466, GSM921467, GSM921468, GSM921469, GSM921470, GSM921471, GSM921472, GSM948770, GSM948771, GSM948772, GSM948773, GSM948774, GSM982137, GSM982138, GSM982139, GSM982140, GSM982141, GSM982142, GSM1003432, GSM1003433, GSM1006996, GSM1006997, GSM1006998, GSM1040822, GSM1040823, GSM1040824, GSM1040825, GSM1062380, GSM1062381, GSM1062382, GSM1062383, GSM1062384, GSM1062385, GSM1062386, GSM1062387, GSM1062388, GSM1062389, GSM1062390, GSM1062391, GSM1062392, GSM1062393, GSM1062394, GSM1062395, GSM1062396, GSM1062397, GSM1062398, GSM1062399, GSM1155648, GSM1155649, GSM1155650, GSM1155651, GSM5456841, GSM5456842
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| Series (11)
|
| GSE36395 |
Efficient Generation of Integration-free and Engraftable induced Neural Stem Cells (iNSC) from Epithelial-like Cells in Human Urine |
| GSE37547 |
GENETIC CORRECTION OF HUNTINGTON'S DISEASE PHENOTYPES IN INDUCED PLURIPOTENT STEM CELLS |
| GSE38730 |
Gene expression profile in human hepatoma HepG2 cells induced by gambogic acid and bortezomib |
| GSE39948 |
BRE silencing effect on gene expression profile of human umbilical cord perivascular (HUCPV) progenitor cells |
| GSE40858 |
Gene expression profiling analysis of nasopharyngeal carcinoma cell CNE1/MTA1-si cells and CNE1 cells |
| GSE41026 |
Expression analysis of HepG2, HepG2-slug and HepG2-slug on Matrigel |
| GSE41028 |
Slug overexpression |
| GSE42486 |
Expression analysis of miR-139-5p mimic-treated EC109 cells |
| GSE43435 |
Thymidine Kinase and mtDNA Depletion in Human Cardiomyopathy: Epigentic and Translational Evidence for Energy Starvation |
| GSE47737 |
miR-106a-5p inhibits the proliferation and migration of astrocytoma cells and promotes apoptosis by targeting FASTK |
| GSE180263 |
LYAR promotes colorectal cancer progression by up-regulating FSCN1 expression and fatty acid metabolism |
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| Data table header descriptions |
| ID |
|
| GB_ACC |
GenBank accession |
| BUILD |
|
| FEAT_TYPE |
|
| CHROMOSOME |
|
| START |
|
| STOP |
|
| DESCRIPTION |
|
| SEQ_URL |
|
| Data table |
| ID |
GB_ACC |
BUILD |
FEAT_TYPE |
CHROMOSOME |
START |
STOP |
DESCRIPTION |
SEQ_URL |
| AB000409 |
AB000409 |
HG18 |
transcript |
chr1 |
46795677 |
46842496 |
ExemplarFor 'AB000409'; gene_id '8569'; transcript_id 'AB000409'; gene_name 'MKNK1'; alt 'MNK1'; MAP kinase interacting serine/threonine kinase 1 |
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=Retrieve&dopt=full_report&list_uids=8569 |
| AB000463 |
AB000463 |
HG18 |
transcript |
chr4 |
2790338 |
2805812 |
ExemplarFor 'AB000463'; gene_id '6452'; transcript_id 'AB000463'; gene_name 'SH3BP2'; alt 'CRBM#CRPM#FLJ42079#RES4-23'; SH3-domain binding protein 2 |
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=Retrieve&dopt=full_report&list_uids=6452 |
| AB000781 |
AB000781 |
HG18 |
transcript |
chr10 |
134830875 |
134888424 |
ExemplarFor 'AB000781'; gene_id '85442'; transcript_id 'AB000781'; gene_name 'KNDC1'; alt 'C10orf23#FLJ16067#RASGEF2#RP13-439H18.3#bB439H18.3'; kinase non-catalytic C-lobe domain (KIND) containing 1 |
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=Retrieve&dopt=full_report&list_uids=85442 |
| AB001328 |
AB001328 |
HG18 |
transcript |
chr13 |
98151943 |
98176822 |
ExemplarFor 'AB001328'; gene_id '6564'; transcript_id 'AB001328'; gene_name 'SLC15A1'; alt 'HPECT1#HPEPT1#PEPT1'; solute carrier family 15 (oligopeptide transporter), member 1 |
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=Retrieve&dopt=full_report&list_uids=6564 |
| AB002294 |
AB002294 |
HG18 |
transcript |
chr16 |
30994723 |
31002327 |
ExemplarFor 'AB002294'; gene_id '9726'; transcript_id 'AB002294'; gene_name 'ZNF646'; alt 'KIAA0296'; zinc finger protein 646 |
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=Retrieve&dopt=full_report&list_uids=9726 |
| AB002308 |
AB002308 |
HG18 |
transcript |
chr9 |
138454379 |
138497328 |
ExemplarFor 'AB002308'; gene_id '9919'; transcript_id 'AB002308'; gene_name 'KIAA0310'; alt 'RP11-413M3.10'; KIAA0310 |
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=Retrieve&dopt=full_report&list_uids=9919 |
| AB002311 |
AB002311 |
HG18 |
transcript |
chr4 |
160408695 |
160500749 |
ExemplarFor 'AB002311'; gene_id '9693'; transcript_id 'AB002311'; gene_name 'RAPGEF2'; alt 'CNrasGEF#PDZ-GEF1#PDZGEF1#RA-GEF#Rap GEP#Rap-GEP'; Rap guanine nucleotide exchange factor (GEF) 2 |
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=Retrieve&dopt=full_report&list_uids=9693 |
| AB002313 |
AB002313 |
HG18 |
transcript |
chr22 |
49055536 |
49071150 |
ExemplarFor 'AB002313'; gene_id '23654'; transcript_id 'AB002313'; gene_name 'PLXNB2'; alt 'KIAA0315#MM1#Nbla00445#PLEXB2#dJ402G11.3'; plexin B2 |
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=Retrieve&dopt=full_report&list_uids=23654 |
| AB002360 |
AB002360 |
HG18 |
transcript |
chr13 |
112670814 |
112800864 |
ExemplarFor 'AB002360'; gene_id '23263'; transcript_id 'AB002360'; gene_name 'MCF2L'; alt 'ARHGEF14#DBS#FLJ12122#KIAA0362#OST'; MCF.2 cell line derived transforming sequence-like |
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=Retrieve&dopt=full_report&list_uids=23263 |
| AB002377 |
AB002377 |
HG18 |
transcript |
chr3 |
15683749 |
15875933 |
ExemplarFor 'AB002377'; gene_id '23243'; transcript_id 'AB002377'; gene_name 'ANKRD28'; alt 'KIAA0379'; ankyrin repeat domain 28 |
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=Retrieve&dopt=full_report&list_uids=23243 |
| AB002381 |
AB002381 |
HG18 |
transcript |
chr10 |
76272621 |
76462056 |
ExemplarFor 'AB002381'; gene_id '23522'; transcript_id 'AB002381'; gene_name 'MYST4'; alt 'DKFZp313G1618#FLJ90335#KIAA0383#MORF#MOZ2#qkf#querkopf'; MYST histone acetyltransferase (monocytic leukemia) 4 |
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=Retrieve&dopt=full_report&list_uids=23522 |
| AB002382 |
AB002382 |
HG18 |
transcript |
chr11 |
57236664 |
57342494 |
ExemplarFor 'AB002382'; gene_id 'N/A'; transcript_id 'AB002382'; gene_name 'N/A'; alt 'N/A'; Homo sapiens mRNA for KIAA0384 gene, partial cds. |
http://www.ncbi.nlm.nih.gov/gquery/gquery.fcgi?term=AB002382 |
| AB002384 |
AB002384 |
HG18 |
transcript |
chr6 |
24912491 |
25019174 |
ExemplarFor 'AB002384'; gene_id '9750'; transcript_id 'AB002384'; gene_name 'C6orf32'; alt 'DIFF40#DIFF48#FAM65B#KIAA0386#PL48'; chromosome 6 open reading frame 32 |
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=Retrieve&dopt=full_report&list_uids=9750 |
| AB003177 |
AB003177 |
HG18 |
transcript |
chr12 |
120811020 |
120838932 |
ExemplarFor 'AB003177'; gene_id 'N/A'; transcript_id 'AB003177'; gene_name 'N/A'; alt 'N/A'; Homo sapiens mRNA for proteasome subunit p27, complete cds. |
http://www.ncbi.nlm.nih.gov/gquery/gquery.fcgi?term=AB003177 |
| AB003333 |
AB003333 |
HG18 |
transcript |
chr13 |
30608764 |
30634032 |
ExemplarFor 'AB003333'; gene_id '10808'; transcript_id 'AB003333'; gene_name 'HSPH1'; alt 'DKFZp686M05240#HSP105A#HSP105B#KIAA0201#NY-CO-25'; heat shock 105kDa/110kDa protein 1 |
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=Retrieve&dopt=full_report&list_uids=10808 |
| AB006589 |
AB006589 |
HG18 |
transcript |
chr14 |
63763182 |
63874567 |
ExemplarFor 'AB006589'; gene_id '2100'; transcript_id 'AB006589'; gene_name 'ESR2'; alt '5p152#ER-BETA#ESR-BETA#ESRB#Erb#NR3A2'; estrogen receptor 2 (ER beta) |
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=Retrieve&dopt=full_report&list_uids=2100 |
| AB006590 |
AB006590 |
HG18 |
transcript |
chr14 |
63769558 |
63819550 |
ExemplarFor 'AB006590'; gene_id '2100'; transcript_id 'AB006590'; gene_name 'ESR2'; alt '5p152#ER-BETA#ESR-BETA#ESRB#Erb#NR3A2'; estrogen receptor 2 (ER beta) |
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=Retrieve&dopt=full_report&list_uids=2100 |
| AB006621 |
AB006621 |
HG18 |
transcript |
chr20 |
40134827 |
41251879 |
ExemplarFor 'AB006621'; gene_id '11122'; transcript_id 'AB006621'; gene_name 'PTPRT'; alt 'KIAA0283#RPTPrho'; protein tyrosine phosphatase, receptor type, T |
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=Retrieve&dopt=full_report&list_uids=11122 |
| AB006625 |
AB006625 |
HG18 |
transcript |
chr19 |
62015611 |
62043879 |
ExemplarFor 'AB006625'; gene_id '5178'; transcript_id 'AB006625'; gene_name 'PEG3'; alt 'DKFZp781A095#KIAA0287#PW1#ZSCAN24'; paternally expressed 3 |
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=Retrieve&dopt=full_report&list_uids=5178 |
| AB007457 |
AB007457 |
HG18 |
transcript |
chr7 |
86792601 |
86812738 |
ExemplarFor 'AB007457'; gene_id '11257'; transcript_id 'AB007457'; gene_name 'TP53AP1'; alt 'H_RG012D21.9#P53TG1#P53TG1-D#TP53 target gene 1#TP53TG1'; TP53 activated protein 1 |
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=Retrieve&dopt=full_report&list_uids=11257 |
Total number of rows: 45033
Table truncated, full table size 13659 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL15338_100718_HG18_opt_expr.ndf.gz |
8.5 Mb |
(ftp)(http) |
NDF |
| GPL15338_100718_HG18_opt_expr.ngd.gz |
2.7 Mb |
(ftp)(http) |
NGD |
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