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Status
Public on Jan 03, 2012
Title
Agilent-028279 SurePrint G3 Rat GE 8x60K Microarray (Probe Name version)
Technology type
in situ oligonucleotide
Distribution
commercial
Organism
Rattus norvegicus Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
SurePrint G3 Rat GE 8x60K Microarray
Submission date
Jan 03, 2012
Last update date
May 20, 2015
Organization
Agilent Technologies
E-mail(s)
cag_sales-na@agilent.com Phone
877-424-4536
URL
http://www.agilent.com Department
Street address
City
Palo Alto
State/province
CA
ZIP/Postal code
94304
Country
USA
Samples (1409)
GSM856707 , GSM856708 , GSM856709 , GSM856710 , GSM856711 , GSM856712
GSM856713 ,
GSM856714 ,
GSM856715 ,
GSM856716 ,
GSM856717 ,
GSM856718 ,
GSM946937 ,
GSM946938 ,
GSM946939 ,
GSM946940 ,
GSM946941 ,
GSM946942 ,
GSM946943 ,
GSM946944 ,
GSM946945 ,
GSM946946 ,
GSM946947 ,
GSM952538 ,
GSM952539 ,
GSM952540 ,
GSM952541 ,
GSM952542 ,
GSM952543 ,
GSM952544 ,
GSM952545 ,
GSM952546 ,
GSM952547 ,
GSM952548 ,
GSM952549 ,
GSM1140968 ,
GSM1140969 ,
GSM1140970 ,
GSM1140971 ,
GSM1140972 ,
GSM1140973 ,
GSM1140974 ,
GSM1140975 ,
GSM1140976 ,
GSM1140977 ,
GSM1155970 ,
GSM1155971 ,
GSM1155972 ,
GSM1155973 ,
GSM1155974 ,
GSM1155975 ,
GSM1155976 ,
GSM1155977 ,
GSM1155978 ,
GSM1155979 ,
GSM1155980 ,
GSM1155981 ,
GSM1214666 ,
GSM1214667 ,
GSM1214668 ,
GSM1214669 ,
GSM1214670 ,
GSM1214671 ,
GSM1214672 ,
GSM1214673 ,
GSM1244359 ,
GSM1244360 ,
GSM1244361 ,
GSM1244362 ,
GSM1244363 ,
GSM1244364 ,
GSM1244365 ,
GSM1244366 ,
GSM1244367 ,
GSM1244368 ,
GSM1244369 ,
GSM1244370 ,
GSM1244371 ,
GSM1244372 ,
GSM1244373 ,
GSM1244374 ,
GSM1244375 ,
GSM1244376 ,
GSM1244377 ,
GSM1244378 ,
GSM1248913 ,
GSM1248914 ,
GSM1250194 ,
GSM1250195 ,
GSM1250196 ,
GSM1250197 ,
GSM1250198 ,
GSM1250199 ,
GSM1250200 ,
GSM1250201 ,
GSM1250202 ,
GSM1250203 ,
GSM1250204 ,
GSM1250205 ,
GSM1250206 ,
GSM1250207 ,
GSM1250208 ,
GSM1250209 ,
GSM1250210 ,
GSM1250211 ,
GSM1250212 ,
GSM1250213 ,
GSM1250214 ,
GSM1250215 ,
GSM1290119 ,
GSM1290120 ,
GSM1290121 ,
GSM1290122 ,
GSM1290123 ,
GSM1290124 ,
GSM1290125 ,
GSM1290126 ,
GSM1290127 ,
GSM1290128 ,
GSM1290129 ,
GSM1290130 ,
GSM1290131 ,
GSM1290132 ,
GSM1290133 ,
GSM1290134 ,
GSM1335076 ,
GSM1335077 ,
GSM1335078 ,
GSM1335079 ,
GSM1335080 ,
GSM1335081 ,
GSM1335082 ,
GSM1335083 ,
GSM1335084 ,
GSM1335085 ,
GSM1335086 ,
GSM1335087 ,
GSM1501787 ,
GSM1501788 ,
GSM1501789 ,
GSM1501790 ,
GSM1501791 ,
GSM1501792 ,
GSM1501793 ,
GSM1501794 ,
GSM1518657 ,
GSM1518658 ,
GSM1518659 ,
GSM1518660 ,
GSM1518661 ,
GSM1518662 ,
GSM1518663 ,
GSM1518664 ,
GSM1518665 ,
GSM1518666 ,
GSM1518667 ,
GSM1518668 ,
GSM1518669 ,
GSM1518670 ,
GSM1518671 ,
GSM1518672 ,
GSM1518673 ,
GSM1518674 ,
GSM1518675 ,
GSM1518676 ,
GSM1518677 ,
GSM1518678 ,
GSM1518679 ,
GSM1518680 ,
GSM1524394 ,
GSM1524395 ,
GSM1524396 ,
GSM1524397 ,
GSM1524398 ,
GSM1524399 ,
GSM1524400 ,
GSM1524401 ,
GSM1533656 ,
GSM1533657 ,
GSM1533658 ,
GSM1533659 ,
GSM1533660 ,
GSM1533661 ,
GSM1533662 ,
GSM1533663 ,
GSM1533664 ,
GSM1533665 ,
GSM1533666 ,
GSM1533667 ,
GSM1533668 ,
GSM1533669 ,
GSM1533670 ,
GSM1533671 ,
GSM1533672 ,
GSM1533673 ,
GSM1533674 ,
GSM1533675 ,
GSM1533676 ,
GSM1533677 ,
GSM1533678 ,
GSM1533679 ,
GSM1533680 ,
GSM1533681 ,
GSM1533682 ,
GSM1533683 ,
GSM1533684 ,
GSM1533685 ,
GSM1533686 ,
GSM1533687 ,
GSM1533688 ,
GSM1533689 ,
GSM1533690 ,
GSM1533691 ,
GSM1533692 ,
GSM1533693 ,
GSM1533694 ,
GSM1533695 ,
GSM1533696 ,
GSM1533697 ,
GSM1533698 ,
GSM1533699 ,
GSM1533700 ,
GSM1533701 ,
GSM1533702 ,
GSM1533703 ,
GSM1533704 ,
GSM1547703 ,
GSM1547704 ,
GSM1547705 ,
GSM1547706 ,
GSM1576939 ,
GSM1576940 ,
GSM1576941 ,
GSM1576942 ,
GSM1576943 ,
GSM1576944 ,
GSM1592090 ,
GSM1592091 ,
GSM1592092 ,
GSM1592093 ,
GSM1592094 ,
GSM1592095 ,
GSM1592096 ,
GSM1592097 ,
GSM1618731 ,
GSM1618732 ,
GSM1618733 ,
GSM1618734 ,
GSM1618735 ,
GSM1618736 ,
GSM1618737 ,
GSM1618738 ,
GSM1626519 ,
GSM1626520 ,
GSM1626521 ,
GSM1626522 ,
GSM1626523 ,
GSM1626524 ,
GSM1626525 ,
GSM1626526 ,
GSM1626527 ,
GSM1626528 ,
GSM1626529 ,
GSM1626530 ,
GSM1626531 ,
GSM1626532 ,
GSM1626533 ,
GSM1626534 ,
GSM1626535 ,
GSM1626536 ,
GSM1626537 ,
GSM1626538 ,
GSM1626539 ,
GSM1626540 ,
GSM1626541 ,
GSM1626542 ,
GSM1626543 ,
GSM1626544 ,
GSM1626545 ,
GSM1626546 ,
GSM1626547 ,
GSM1626548 ,
GSM1626549 ,
GSM1626550 ,
GSM1626551 ,
GSM1626552 ,
GSM1626553 ,
GSM1626554 ,
GSM1635291 ,
GSM1635292 ,
GSM1635293 ,
GSM1635294 ,
GSM1635295 ,
GSM1635296 ,
GSM1635297 ,
GSM1635298 ,
GSM1635299 ,
GSM1635300 ,
GSM1635301 ,
GSM1635302 ,
GSM1635303 ,
GSM1635304 ,
GSM1635305 ,
GSM1635306 ,
GSM1635307 ,
GSM1635308 ,
GSM1635309 ,
GSM1635310 ,
GSM1635311 ,
GSM1635312 ,
GSM1635313 ,
GSM1635314 ,
GSM1635315 ,
GSM1635316 ,
GSM1635317 ,
GSM1635318 ,
GSM1635319 ,
GSM1635320 ,
GSM1635321 ,
GSM1635322 ,
GSM1635323 ,
GSM1635324 ,
GSM1635325 ,
GSM1635326 ,
GSM1635327 ,
GSM1635328 ,
GSM1635329 ,
GSM1635330 ,
GSM1635331 ,
GSM1635332 ,
GSM1635333 ,
GSM1635334 ,
GSM1635335 ,
GSM1635336 ,
GSM1635337 ,
GSM1635338 ,
GSM1635339 ,
GSM1635340 ,
GSM1635341 ,
GSM1635342 ,
GSM1635343 ,
GSM1635344 ,
GSM1635345 ,
GSM1635346 ,
GSM1635347 ,
GSM1635348 ,
GSM1635349 ,
GSM1635350 ,
GSM1635351 ,
GSM1635352 ,
GSM1635353 ,
GSM1635354 ,
GSM1635355 ,
GSM1635356 ,
GSM1635357 ,
GSM1635358 ,
GSM1635359 ,
GSM1635360 ,
GSM1635361 ,
GSM1635362 ,
GSM1635363 ,
GSM1635364 ,
GSM1635365 ,
GSM1635366 ,
GSM1635367 ,
GSM1635368 ,
GSM1635369 ,
GSM1635370 ,
GSM1635371 ,
GSM1635372 ,
GSM1635373 ,
GSM1635374 ,
GSM1676370 ,
GSM1676371 ,
GSM1676372 ,
GSM1676373 ,
GSM1676374 ,
GSM1676375 ,
GSM1676376 ,
GSM1676377 ,
GSM1676378 ,
GSM1676379 ,
GSM1676380 ,
GSM1676381 ,
GSM1676382 ,
GSM1676383 ,
GSM1676384 ,
GSM1676385 ,
GSM1676386 ,
GSM1676387 ,
GSM1676388 ,
GSM1676389 ,
GSM1676390 ,
GSM1676391 ,
GSM1676392 ,
GSM1676393 ,
GSM1676394 ,
GSM1676395 ,
GSM1676396 ,
GSM1676397 ,
GSM1676398 ,
GSM1676399 ,
GSM1676400 ,
GSM1676401 ,
GSM1676402 ,
GSM1676403 ,
GSM1676404 ,
GSM1676405 ,
GSM1676406 ,
GSM1676407 ,
GSM1676408 ,
GSM1676409 ,
GSM1676410 ,
GSM1676411 ,
GSM1676412 ,
GSM1676413 ,
GSM1676414 ,
GSM1676415 ,
GSM1676416 ,
GSM1676417 ,
GSM1676418 ,
GSM1676419 ,
GSM1676420 ,
GSM1676421 ,
GSM1676422 ,
GSM1676423 ,
GSM1676424 ,
GSM1676425 ,
GSM1676426 ,
GSM1676427 ,
GSM1676428 ,
GSM1676429 ,
GSM1676430 ,
GSM1676431 ,
GSM1676432 ,
GSM1676433 ,
GSM1676434 ,
GSM1676435 ,
GSM1676436 ,
GSM1676437 ,
GSM1676438 ,
GSM1676439 ,
GSM1676440 ,
GSM1676441 ,
GSM1676442 ,
GSM1676443 ,
GSM1676444 ,
GSM1676445 ,
GSM1676446 ,
GSM1676447 ,
GSM1676448 ,
GSM1676449 ,
GSM1676450 ,
GSM1676451 ,
GSM1676452 ,
GSM1676453 ,
GSM1676454 ,
GSM1676455 ,
GSM1676456 ,
GSM1676457 ,
GSM1676458 ,
GSM1676459 ,
GSM1676460 ,
GSM1676461 ,
GSM1676462 ,
GSM1676463 ,
GSM1676464 ,
GSM1676465 ,
GSM1676466 ,
GSM1676467 ,
GSM1676468 ,
GSM1676469 ,
GSM1676470 ,
GSM1676471 ,
GSM1676472 ,
GSM1676473 ,
GSM1676474 ,
GSM1676475 ,
GSM1676476 ,
GSM1676477 ,
GSM1676478 ,
GSM1676479 ,
GSM1676480 ,
GSM1676481 ,
GSM1676482 ,
GSM1676483 ,
GSM1676484 ,
GSM1676485 ,
GSM1676486 ,
GSM1676487 ,
GSM1676488 ,
GSM1678901 ,
GSM1678902 ,
GSM1678903 ,
GSM1678904 ,
GSM1678905 ,
GSM1678906 ,
GSM1678907 ,
GSM1678909 ,
GSM1702815 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here Series (81)
GSE34739 Exosomal tumor miRNA modulates premetastatic organ cells
GSE34868 Immunodominant myelin basic protein fragments induce mechanical hypersensitivity.
GSE38655 Exosomal tumor microRNA modulates premetastatic organ cells [Agilent]
GSE38942 VSL#3 protects against development of visceral pain in the neonatal maternal separation model: A whole genome microarray study
GSE46910 Gene Expression Analysis of Postnatal Day 6 Testes Sired by Paternally Exposed Males to Saline or BEP
GSE47754 Chronic Psychological Stress regulates Visceral Adipocyte-mediated Glucose Metabolism and Inflammatory Circuits in male Rats
GSE50143 Expression data of CD9 positive germ cells from young and aged Sprague Dawley germ cell specific GFP rats
GSE51381 The ability of VSL#3 to restore the age-related deficit in LTP is associated with changes in brain genes expression
GSE51593 Bone marrow-derived stromal cells from double transgenic rats (of Sprague-Dawley origin) harboring the human angiotensinogen and human renin genes, and control rats
GSE51657 The influence of long-term use of diet enriched with biologically active substances on transcirptomic profile in rats liver
GSE53363 Small artery remodeling depends on the genetic background in spontaneously hypertensive rats (mRNA)
GSE53364 Small artery remodeling depends on the genetic background in spontaneously hypertensive rats
GSE55378 A diet enriched with biologically active substances as a protecting factor against carcinogenesis process induced by 1,2-dimethylhydrazine in rat liver
GSE61301 Gene expression of 7 day combinatorial yohimbine and imipramine treated rat hippocampi
GSE62026 Transcriptomics Analysis and Hormonal Changes of Male and Female Rats Treated Chronically with a Low Dose of Acrylamide in their Drinking Water
GSE62282 S100 calcium-binding proteins A8/A9 initiate the early inflammatory program in injured peripheral nerve
GSE62806 Toxicogenomic Assessment of Liver Responses following subchronic exposure to furan in Fischer F344 rats [cRNA]
GSE62808 Toxicogenomic Assessment of Liver Responses following subchronic exposure to furan in Fischer F344 rats
GSE63377 Gene expression change in the cerebellum and prefrontal cortex of depression rats
GSE64692 Gene expression profiles of hexadecyl-4-124I-iodobenzoate(124I-HIB)-labeled adipose-derived stem cells (ADSCs) in vitro and in vivo
GSE65300 Expression data from retinoic acid injections into the third ventricle of F344 rats compared to vehicle injected rats
GSE66287 Hippocampal response to Hypobaric Hypoxia
GSE66623 Iodine-131 Biomarker Identification in the Rat Thyroid Gland
GSE66976 Age-dependent Response of Isolated Male Germ Cells to Oxidative Stress
GSE68387 IMI MARCAR Project: towards novel biomarkers for cancer risk assessment
GSE68592 Trancriptional profiling of rat bladder after daily administration of Pioglitazone and Rosiglitazone in vivo (mRNA)
GSE68676 Gene expression profiling of ovaries collected from rat treated with pregnant mare serum gonadotropins (PMSG) and without PMSG
GSE69520 Hepatic miRNA profiles and thyroid hormone homeostasis in rats exposed to dietary potassium perfluorooctanesulfonate (PFOS) [mRNA]
GSE69522 Hepatic miRNA profiles and thyroid hormone homeostasis in rats exposed to dietary potassium perfluorooctanesulfonate (PFOS)
GSE73116 Detecting metastatic tumors after γ-irradiation using longitudinal molecular imaging and gene expression profiling of metastatic tumor nodules
GSE78731 mRNA microarray in MCAo rat model with IV-hUMSC
GSE79471 Gene expression profiling in male rat germ cells after chronic cyclophosphamide treatment
GSE79894 Regular physical activity followed by detraining increases the sensitivity of global gene expression to acute exercise stress
GSE80257 Fingerprinting of the hNGF P61R100E gene expression in rat Dorsal Root Ganglion detected by microarray analysis
GSE83349 Gene modulation in acetic acid-induced oral ulcerative mucositis
GSE84563 Kidney Hypothermic Perfusion with Mesenchymal Stromal Cells or Microvesicles Protects Rat Kidney from Ischemia By Upregulation of Cell Energy Metabolism and Ion Membrane Transport Key Genes
GSE84687 Effect of erythropoietin (EPO) and leukemia-inhibitory factor (LIF) on gene expression profiling in differentiating rat CG4-EPOR oligodendrocytes
GSE85811 Effects of glucose and insulin resistance on gene expression profiling in the isolated working rat heart
GSE86390 Short-term inhalation exposure to copper oxide nanoparticles induces gene expression changes associated with inflammation and cell proliferation in rat bronchoalveolar epithelium
GSE87611 Conversion of terminally committed hepatocytes to culturable bipotent progenitor cells with regenerative capacity
GSE87764 Chemical induction of liver progenitor cells from mature hepatocytes
GSE90464 Rat esophagus: Control vs. NMBA vs. Tocopherols
GSE91017 Cell subpopulations in cultures of rat's olfactory mucosa
GSE92500 Cellular and genetic factors involved in the difference among rat strains to develop procainamide - induced Autoimmunity
GSE92956 Comparative analysis of time-dependent effects of dynamic stretch on gene expression in neonatal rat cardiomyocytes
GSE96085 Global gene expression profiling of radiation-induced rat mammary carcinomas
GSE96567 Genome-wide profiling of DNA methylation and gene expression in radiation-induced rat mammary carcinomas
GSE102350 Substrate stiffness-dependent gene expression profile for cortical neurons
GSE106680 Transcriptomic study on protective effects of Danhong Injection against cerebral ischemia/reperfusion-induced damage
GSE109013 Effects of cross-fostering and developmental exposure to mixtures of environmental contaminants on hepatic gene expression in prepubertal 21 days old and adult male Sprague-Dawley rats I
GSE109014 Effects of cross-fostering and developmental exposure to mixtures of environmental contaminants on hepatic gene expression in prepubertal 21 days old and adult male Sprague-Dawley rats II.
GSE109015 Effects of cross-fostering and developmental exposure to mixtures of environmental contaminants on hepatic gene expression in prepubertal 21 days old and adult male Sprague-Dawley rats III.
GSE109016 Effects of cross-fostering and developmental exposure to mixtures of environmental contaminants on hepatic gene expression in prepubertal 21 days old and adult male Sprague-Dawley rats IV.
GSE109017 Effects of cross-fostering and developmental exposure to mixtures of environmental contaminants on hepatic gene expression in prepubertal 21 days old and adult male Sprague-Dawley rats V.
GSE109018 Effects of cross-fostering and developmental exposure to mixtures of environmental contaminants on hepatic gene expression in prepubertal 21 days old and adult male Sprague-Dawley rats VI.
GSE109019 Effects of cross-fostering and developmental exposure to mixtures of environmental contaminants on hepatic gene expression in prepubertal 21 days old and adult male Sprague-Dawley rats
GSE109656 Change expression of genes in iron chelation and deficient conditions
GSE110553 Effects of in utero and lactational exposure to new generation green plasticizers on adult male rats: a comparative study with di(2-ethylhexyl) phthalate
GSE111261 Gene expression data of prostate of PND 30 Sprague-Dawley rats (SD:Hsd) dosed prenatally and lactationally with HMB
GSE111262 Gene expression data of testis of PND 30 Sprague-Dawley rats (SD:Hsd) dosed prenatally and lactationally with HMB
GSE111267 Transcript Profiling in the Testes and Prostates of Postnatal Day 30 Sprague-Dawley Rats Exposed Prenatally and Lactationally to 2-Hydroxy-4-methoxybenzophenone
GSE111452 Chronic Gene Expression after Traumatic Brain Injury
GSE111514 The trophic effect of nerve growth factor in primary cultures of rat hippocampal neurons is associated to an anti-inflammatory and immunosuppressive transcriptional program
GSE112638 Gene expression profiles of rat hypertrophic zone after treatment of CNP53 or U0126 [U0126]
GSE112639 Gene expression profiles of rat hypertrophic zone after treatment of CNP53 or U0126
GSE113000 Perinatal exposure to an environmentally-relevant mixture of BFRs and ovarian gene expression in the adult rat
GSE115614 Treatment with antidepressant drugs in a rat model of Traumatic Brain Injury
GSE132816 In vivo evaluation of the 94 GHz-chronic exposure effect on Hairless rat skin gene expression [C1]
GSE132817 In vivo evaluation of the 94 GHz-chronic exposure effect on Hairless rat skin gene expression [C2]
GSE132818 In vivo evaluation of the 94 GHz-chronic exposure effect on Hairless rat skin gene expression
GSE149230 Comparison of the hepatic effects of phenobarbital in chimeric mice containing either rat or human hepatocytes with humanized constitutive androstane receptor (CAR) and pregnane X receptor (PXR) mice (hCAR/hPXR mice) [rat liver experiments]
GSE149297 ADRB3 overexpression in rat
GSE158900 Similar pulmonary toxicity and gene expression changes after short-term inhalation exposure to surface-modified copper oxide nanoparticles
GSE159555 Identification of regulated genes associated with ketogenic diet treatment following SCI
GSE171144 Study of the pathology and the underlying molecular mechanism of tissue injury around hematoma following intracerebral hemorrhage
GSE174099 Differential expression profile of liver tissue in rats with hepatic fibrosis
GSE179383 Deciphering the conserved dynamic transcriptional signature and regulatory software governing neuronal fate commitment
GSE184693 The protective role of hydrogen sulfide and its impact on gene expression profiling in rat model of COPD
GSE185702 Enhanced glucose metabolism through activation of HIF-1α covers the energy demand in a rat embryonic heart primordium after heartbeat initiation.
GSE201025 Analysis of gene expression patterns in denervated muscle atrophy
GSE217747 Investigating the Mechanism of Chinese Medicine Formula AACO Against Chronic Heart Failure by Network Pharmacology Analysis and Experimental Validation
Relations Alternative to
GPL14797 (Feature Number version)
Data table header descriptions ID NAME
CONTROL_TYPE Control type
REFSEQ RefSeqAccession
GB_ACC GenBank Accession number
LOCUSLINK_ID LocuslinkID
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
UNIGENE_ID UnigeneID
ENSEMBL_ID EnsemblID
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GO_ID GoIDs
SEQUENCE Sequence
SPOT_ID Spot identifier
Data table ID CONTROL_TYPE REFSEQ GB_ACC LOCUSLINK_ID GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GO_ID SEQUENCE SPOT_ID GE_BrightCorner
pos
--GE_BrightCorner
DarkCorner
pos
--DarkCorner
A_42_P453055
FALSE
NM_031752
NM_031752 78958
Bcam
basal cell adhesion molecule
Rn.7003
ENSRNOT00000045574
ref|NM_031752|ens|ENSRNOT00000045574|gb|AB035510|gb|BC072479
chr1:79069491-79069432
rn|1q21
Rattus norvegicus basal cell adhesion molecule (Bcam), mRNA [NM_031752]
GO:0004872(receptor activity)|GO:0005055(laminin receptor activity)|GO:0005886(plasma membrane)|GO:0007155(cell adhesion)|GO:0007160(cell-matrix adhesion)|GO:0007165(signal transduction)|GO:0009986(cell surface)|GO:0016021(integral to membrane)|GO:0043236(laminin binding)
TGGCAGTCAGCGTCGGTCTCTTGCTACTCGTAGTCGCTGCTTTCTACTGCATGAGACGCA
A_42_P453171
FALSE
NM_001107063
NM_001107063 303653
Cdc42ep4
CDC42 effector protein (Rho GTPase binding) 4
Rn.8595
ENSRNOT00000048264
ref|NM_001107063|ens|ENSRNOT00000048264|gb|BC161986|tc|TC614652
chr10:103366334-103366275
rn|10q32.1
Rattus norvegicus CDC42 effector protein (Rho GTPase binding) 4 (Cdc42ep4), mRNA [NM_001107063]
GO:0005737(cytoplasm)|GO:0007266(Rho protein signal transduction)|GO:0008360(regulation of cell shape)|GO:0015629(actin cytoskeleton)|GO:0015630(microtubule cytoskeleton)|GO:0031274(positive regulation of pseudopodium assembly)
TTTTTCTGAAATCTGTTTTGCTCGGCTCCTGTAACTCTACCCAGAACAAGGGTAGAGGCT
A_42_P453894
FALSE
NM_001108296
NM_001108296 360617
RGD1306682
similar to RIKEN cDNA 1810046J19
Rn.143893
ENSRNOT00000009485
ref|NM_001108296|ens|ENSRNOT00000009485|gb|FQ214212|tc|TC587562
chr10:87243261-87243202
rn|10q31
Rattus norvegicus similar to RIKEN cDNA 1810046J19 (RGD1306682), mRNA [NM_001108296]
GO:0008430(selenium binding)|GO:0045454(cell redox homeostasis)
CACAAAGAGGGATTAGACATTTCTATGGTCTAAGGAAGAAAAGAGATGTTCTCCGTGGAC
A_42_P453935
FALSE
NM_001198580
NM_001198580 288770
Naca
nascent polypeptide-associated complex alpha subunit
Rn.162909
ENSRNOT00000003550
ref|NM_001198580|ref|NM_001105939|ref|NM_001198562|ens|ENSRNOT00000003550
chr7:1341431-1341490
rn|7q11
Rattus norvegicus nascent polypeptide-associated complex alpha subunit (Naca), transcript variant 3, mRNA [NM_001198580]
TTACAGGGGTTACGAGAGTCACTATCCGGAAATCTAAAAATATCCTCTTTGTCATCACAA
A_42_P453959
FALSE
NM_001107833
NM_001107833 311866
Lrsam1
leucine rich repeat and sterile alpha motif containing 1
Rn.61607
ENSRNOT00000060186
ref|NM_001107833|ens|ENSRNOT00000060186|ens|ENSRNOT00000034151|tc|TC599544
chr3:11918584-11918525
rn|3p11
Rattus norvegicus leucine rich repeat and sterile alpha motif containing 1 (Lrsam1), mRNA [NM_001107833]
GO:0000209(protein polyubiquitination)|GO:0004842(ubiquitin-protein ligase activity)|GO:0005737(cytoplasm)|GO:0008270(zinc ion binding)|GO:0030163(protein catabolic process)|GO:0044425(membrane part)|GO:0045806(negative regulation of endocytosis)|GO:0046755(non-lytic virus budding)|GO:0046872(metal ion binding)|GO:0051865(protein autoubiquitination)|GO:0070086(ubiquitin-dependent endocytosis)
AACGAAGCAGGAAAATTACTGGCTCATCCAGTACCAACGGCTTTTGAACCAGAAGCCTTT
A_42_P453976
FALSE
XM_219476
XM_219476 309104
Ifitm6
interferon induced transmembrane protein 6
Rn.136568
ref|XM_219476|ref|XM_001061891|tc|TC646750
chr1:201204979-201204920
rn|1q41
PREDICTED: Rattus norvegicus interferon induced transmembrane protein 6 (Ifitm6), mRNA [XM_219476]
GO:0009607(response to biotic stimulus)|GO:0016021(integral to membrane)
CAGGGATAACAAGCCTATCCTATAGCCGACATAATTAGAACCTACTAGTTAGGTACTAAC
A_42_P454206
FALSE
NM_001173354
NM_001173354 315949
Armc8
armadillo repeat containing 8
Rn.8146
ref|NM_001173354|tc|TC585383
chr8:104342200-104342141
rn|8q31
Rattus norvegicus armadillo repeat containing 8 (Armc8), mRNA [NM_001173354]
GO:0005488(binding)
AACAGAACTTGGGTTTTATGCACATGTCAGAGTGCTAATGTGAGAAAATCTGGGAATGGA
A_42_P454301
FALSE
NM_001107166
NM_001107166 304670
Tnpo2
transportin 2
Rn.228319
ENSRNOT00000005571
ref|NM_001107166|ens|ENSRNOT00000005571|gb|BI276117|tc|TC588749
chr19:24755817-24755758
rn|19q11
Rattus norvegicus transportin 2 (Tnpo2), mRNA [NM_001107166]
GO:0005488(binding)|GO:0006886(intracellular protein transport)|GO:0008565(protein transporter activity)
TTTTATTACCATTACCCCATGGGCTCCCAGGTCTATCCATCTGTTACTGTGCTGTGCTGG
A_42_P454311
FALSE
NM_001037654
NM_001037654 363062
Dixdc1
DIX domain containing 1
Rn.8331
ENSRNOT00000039045
ref|NM_001037654|ens|ENSRNOT00000039045|gb|AY770507|tc|TC585766
chr8:54018279-54018220
rn|8q23
Rattus norvegicus DIX domain containing 1 (Dixdc1), mRNA [NM_001037654]
GO:0003779(actin binding)|GO:0004871(signal transducer activity)|GO:0005622(intracellular)|GO:0005737(cytoplasm)|GO:0005829(cytosol)|GO:0005925(focal adhesion)|GO:0005938(cell cortex)|GO:0007275(multicellular organismal development)|GO:0019904(protein domain specific binding)|GO:0021695(cerebellar cortex development)|GO:0030054(cell junction)|GO:0030900(forebrain development)|GO:0031435(mitogen-activated protein kinase kinase kinase binding)|GO:0043010(camera-type eye development)|GO:0043015(gamma-tubulin binding)|GO:0043025(neuronal cell body)|GO:0043234(protein complex)|GO:0043679(axon terminus)|GO:0046330(positive regulation of JNK cascade)|GO:0050772(positive regulation of axonogenesis)|GO:0060070(canonical Wnt receptor signaling pathway)|GO:0060071(Wnt receptor signaling pathway, planar cell polarity pathway)|GO:0090263(positive regulation of canonical Wnt receptor signaling pathway)
TCAAAGTAATAACGTGTTTTAACTGCCTATATGTACCAGAGTTGTGAACAAGTCAAAACC
A_42_P454378
FALSE
NM_019214
NM_019214 29440
Slc26a4
solute carrier family 26, member 4
Rn.11792
ENSRNOT00000010350
ref|NM_019214|ens|ENSRNOT00000010350|gb|AF167412|tc|TC574930
chr6:49395832-49394773
rn|6q16
Rattus norvegicus solute carrier family 26, member 4 (Slc26a4), mRNA [NM_019214]
GO:0005215(transporter activity)|GO:0006821(chloride transport)|GO:0006885(regulation of pH)|GO:0008271(secondary active sulfate transmembrane transporter activity)|GO:0008272(sulfate transport)|GO:0015108(chloride transmembrane transporter activity)|GO:0015111(iodide transmembrane transporter activity)|GO:0015698(inorganic anion transport)|GO:0015705(iodide transport)|GO:0016020(membrane)|GO:0016021(integral to membrane)|GO:0016324(apical plasma membrane)|GO:0032880(regulation of protein localization)|GO:0055085(transmembrane transport)
ACTTTGCTTTGCTTCAAGACGATGTACTAGAAAAGATGGAGCAGTGTGGGTTCTTTGATG
A_42_P455785
FALSE
NM_080781
NM_080781 114023
Copb1
coatomer protein complex, subunit beta 1
Rn.4327
ENSRNOT00000016292
ref|NM_080781|ens|ENSRNOT00000016292|gb|X57228|gb|BC061882
chr1:172200815-172200007
rn|1q34
Rattus norvegicus coatomer protein complex, subunit beta 1 (Copb1), mRNA [NM_080781]
GO:0000139(Golgi membrane)|GO:0005198(structural molecule activity)|GO:0005515(protein binding)|GO:0005737(cytoplasm)|GO:0005783(endoplasmic reticulum)|GO:0005792(microsome)|GO:0005793(ER-Golgi intermediate compartment)|GO:0005794(Golgi apparatus)|GO:0005798(Golgi-associated vesicle)|GO:0005829(cytosol)|GO:0005886(plasma membrane)|GO:0006886(intracellular protein transport)|GO:0006890(retrograde vesicle-mediated transport, Golgi to ER)|GO:0006891(intra-Golgi vesicle-mediated transport)|GO:0016044(cellular membrane organization)|GO:0016192(vesicle-mediated transport)|GO:0030117(membrane coat)|GO:0030126(COPI vesicle coat)|GO:0030137(COPI-coated vesicle)|GO:0031410(cytoplasmic vesicle)|GO:0048205(COPI coating of Golgi vesicle)
TTCGTGCAAAAAGTCAGGGAATGGCCTTGAGCCTTGGAGATAAAATCAACCTGTCTCAAA
A_42_P455802
FALSE
NM_001013929
NM_001013929 297797
Atp6v1h
ATPase, H+ transporting, lysosomal V1 subunit H
Rn.21454
ENSRNOT00000043993
ref|NM_001013929|ens|ENSRNOT00000043993|ens|ENSRNOT00000065402|gb|BC083669
chr5:14603736-14603677
rn|5q12
Rattus norvegicus ATPase, H+ transporting, lysosomal V1 subunit H (Atp6v1h), mRNA [NM_001013929]
GO:0006897(endocytosis)
TGATCCACAAGTTTTAGCTGTTGCTGCTCATGATGTTGGAGAATATGTCCGGCATTATCC
A_42_P456080
FALSE
tc|TC595970
chr3:096121418-096121359
rn|3q33
CCTGGCTGCATGATGAAATTCAACTTGAATGCTAAATGATTCTTGGCACAATCCACTGTA
A_42_P456080
A_42_P456155
FALSE
NM_001126097
NM_001126097 690848
Uqcr11
ubiquinol-cytochrome c reductase, complex III subunit XI
Rn.3254
ENSRNOT00000022747
ref|NM_001126097|ens|ENSRNOT00000022747|gb|FQ217927|gb|BC157815
chr7:10820937-10820996
rn|7q11
Rattus norvegicus ubiquinol-cytochrome c reductase, complex III subunit XI (Uqcr11), nuclear gene encoding mitochondrial protein, mRNA [NM_001126097]
GO:0008121(ubiquinol-cytochrome-c reductase activity)|GO:0009055(electron carrier activity)
TCTCCCTTGAGGATTTCCCAGCTCAAGAATCCTTTGAGCTCCCAACACTTGCATGTCGGG
A_42_P456701
FALSE
NM_001009697
NM_001009697 315763
Mtfmt
mitochondrial methionyl-tRNA formyltransferase
Rn.34645
ENSRNOT00000019671
ref|NM_001009697|ens|ENSRNOT00000019671|gb|BC088470|gb|FQ226710
chr8:69701562-69701621
rn|8q24
Rattus norvegicus mitochondrial methionyl-tRNA formyltransferase (Mtfmt), nuclear gene encoding mitochondrial protein, mRNA [NM_001009697]
GO:0004479(methionyl-tRNA formyltransferase activity)|GO:0005739(mitochondrion)|GO:0008168(methyltransferase activity)|GO:0009058(biosynthetic process)|GO:0016740(transferase activity)
CCAGCAACTGCTGTGATTTTGAAAGAAGATGACAGCTTGGGAGAAAGAGAAAATGGTTAT
A_42_P457003
FALSE
NM_012802
NM_012802 25267
Pdgfra
platelet derived growth factor receptor, alpha polypeptide
Rn.55127
ENSRNOT00000003077
ref|NM_012802|ens|ENSRNOT00000003077|gb|M63837|gb|FQ222292
chr14:35369767-35369708
rn|14p11
Rattus norvegicus platelet derived growth factor receptor, alpha polypeptide (Pdgfra), mRNA [NM_012802]
GO:0000166(nucleotide binding)|GO:0001553(luteinization)|GO:0001701(in utero embryonic development)|GO:0004872(receptor activity)|GO:0005018(platelet-derived growth factor alpha-receptor activity)|GO:0005021(vascular endothelial growth factor receptor activity)|GO:0005161(platelet-derived growth factor receptor binding)|GO:0005524(ATP binding)|GO:0005575(cellular_component)|GO:0005634(nucleus)|GO:0005737(cytoplasm)|GO:0005886(plasma membrane)|GO:0005887(integral to plasma membrane)|GO:0008210(estrogen metabolic process)|GO:0008284(positive regulation of cell proliferation)|GO:0008585(female gonad development)|GO:0009653(anatomical structure morphogenesis)|GO:0009725(response to hormone stimulus)|GO:0009887(organ morphogenesis)|GO:0010033(response to organic substance)|GO:0010035(response to inorganic substance)|GO:0018108(peptidyl-tyrosine phosphorylation)|GO:0019838(growth factor binding)|GO:0023019(signal transduction involved in regulation of gene expression)|GO:0030198(extracellular matrix organization)|GO:0030324(lung development)|GO:0030325(adrenal gland development)|GO:0030335(positive regulation of cell migration)|GO:0030539(male genitalia development)|GO:0032355(response to estradiol stimulus)|GO:0033327(Leydig cell differentiation)|GO:0034097(response to cytokine stimulus)|GO:0035790(platelet-derived growth factor receptor-alpha signaling pathway)|GO:0042060(wound healing)|GO:0042063(gliogenesis)|GO:0042475(odontogenesis of dentine-containing tooth)|GO:0042803(protein homodimerization activity)|GO:0043548(phosphatidylinositol 3-kinase binding)|GO:0043627(response to estrogen stimulus)|GO:0045740(positive regulation of DNA replication)|GO:0046777(protein autophosphorylation)|GO:0046983(protein dimerization activity)|GO:0048008(platelet-derived growth factor receptor signaling pathway)|GO:0048010(vascular endothelial growth factor receptor signaling pathway)|GO:0048146(positive regulation of fibroblast proliferation)|GO:0048407(platelet-derived growth factor binding)|GO:0048705(skeletal system morphogenesis)|GO:0048839(inner ear development)|GO:0055003(cardiac myofibril assembly)|GO:0055093(response to hyperoxia)|GO:0060021(palate development)|GO:0060325(face morphogenesis)|GO:0061298(retina vasculature development in camera-type eye)|GO:0071230(cellular response to amino acid stimulus)|GO:0072277(metanephric glomerular capillary formation)
TATCTGTTGCTATGTAGACTTGGAGAATACTGCCAAAACGTGTATGACAAGCTGTATCAC
A_42_P457692
FALSE
NM_001008363
NM_001008363 360772
Zfand2a
zinc finger, AN1-type domain 2A
Rn.19157
ENSRNOT00000047634
ref|NM_001008363|ens|ENSRNOT00000047634|gb|BC085928|tc|TC574549
chr12:15672551-15672610
rn|12q11
Rattus norvegicus zinc finger, AN1-type domain 2A (Zfand2a), mRNA [NM_001008363]
GO:0005634(nucleus)|GO:0005737(cytoplasm)|GO:0008270(zinc ion binding)|GO:0046872(metal ion binding)
GGCCTCAGATTCTATCCCAACTATTGCAAGGAAACAGTCACCAGACTGAAGACAATATCA
A_42_P457773
FALSE
NM_001024998
NM_001024998 307180
Txndc15
thioredoxin domain containing 15
Rn.4142
ENSRNOT00000000146
ref|NM_001024998|ens|ENSRNOT00000000146|gb|BC091340|tc|TC612888
chr17:14938656-14938597
rn|17p14
Rattus norvegicus thioredoxin domain containing 15 (Txndc15), mRNA [NM_001024998]
GO:0016020(membrane)|GO:0016021(integral to membrane)|GO:0045454(cell redox homeostasis)
GCTAACGTGTGGACTTGCCACGGAAGTCAGGTTCAAGAATCATGTTCTTGTTGAACTACT
30507 16651 Kbytes .Supplementary data files not provided
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