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Platform GPL14909 Query DataSets for GPL14909
Status Public on Nov 30, 2011
Title NimbleGen_Tufts University Pseudomonas fluorescens Pf0-1 373K array
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Pseudomonas fluorescens Pf0-1
Manufacturer NimbleGen
Manufacture protocol Array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
 
Description NimbleGen design name 2006-07-27_TI205922_60mer, NimbleGen design ID 4328.
Catalog design for Pseudomonas fluorescens PfO-1 (Taxonomy Id: 205922) covering NC_007492. Probes selected for 5736/5736 sequences. Median number of probes/sequence is 13 with an average of 13.00. Each probe will be replicated 5 times on the chip. Probes are randomly distributed over the surface of the array. Unused features have been filled with randomly generated probes of comparable GC content.
The .ndf and .ngd files are linked below as supplementary files.
 
Submission date Nov 21, 2011
Last update date Nov 30, 2011
Contact name Matthew Mastropaolo
E-mail(s) Matthew.Mastropaolo@tufts.edu
Organization name Tufts Universicty School of Medicine
Department Molecular Biology and Microbiology
Lab Center for Adaptation Genetics and Drug Resistance, Levy Lab
Street address 136 Harrison Ave
City Boston
State/province MA
ZIP/Postal code 02111
Country USA
 
Samples (4) GSM838185, GSM838186, GSM838187, GSM838188
Series (1)
GSE33865 Expression analysis of the AdnA regulon in Pseudomonas fluorescens Pf0-1

Data table header descriptions
ID
PROBE_ID
GENE_EXPR_OPTION
SEQ_ID
SEQUENCE
DESCRIPTION SEQ_UNIQUE|SPECIES_CODE|PLASMID|BUILD|FEAT_TYPE|GENE_NAME|SECONDARY_NAME|ACCESSION|GI|FUNCTION|CHROMOSOME|MAPLOC|DESCRIPTION|SEQ_URL|COMMENTS|DATE_ENTERED|SOURCE_DB
ORF ORF Name

Data table
ID PROBE_ID GENE_EXPR_OPTION SEQ_ID SEQUENCE DESCRIPTION ORF
TI205922P00000013_BLOCK1 TI205922P00000013 BLOCK1 TI205922S000001 CGTGTTGCACGCCTGCCGCAAGATCAACGAACTTAAGGAATCCGACGCGGACATCCGCGA 1|Pseudomonas fluorescens|0|512|CDS|Pfl_0001|GI:77456229;InterPro:IPR001957;InterPro:IPR003593;GeneID:3717569|NC_007492|77456228|chromosomal replication initiation protein|NC_007492|565-2088||http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=search&term=Pfl_0001|Pseudomonas fluorescens PfO-1, complete genome.|2006-05-02|GenBank Pfl_0001
TI205922P00000011_BLOCK1 TI205922P00000011 BLOCK1 TI205922S000001 TTCAACGCCCTGCTTGAAGGTGGCCAGCAGGTCATTCTCACCAGTGACCGCTACCCGAAA 1|Pseudomonas fluorescens|0|512|CDS|Pfl_0001|GI:77456229;InterPro:IPR001957;InterPro:IPR003593;GeneID:3717569|NC_007492|77456228|chromosomal replication initiation protein|NC_007492|565-2088||http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=search&term=Pfl_0001|Pseudomonas fluorescens PfO-1, complete genome.|2006-05-02|GenBank Pfl_0001
TI205922P00000008_BLOCK1 TI205922P00000008 BLOCK1 TI205922S000001 TCGCACCGTCGCTCTCCTTATTAATAGGCAGCAAGCGCAGTTCGGCTCCTCGTGCCGCAC 1|Pseudomonas fluorescens|0|512|CDS|Pfl_0001|GI:77456229;InterPro:IPR001957;InterPro:IPR003593;GeneID:3717569|NC_007492|77456228|chromosomal replication initiation protein|NC_007492|565-2088||http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=search&term=Pfl_0001|Pseudomonas fluorescens PfO-1, complete genome.|2006-05-02|GenBank Pfl_0001
TI205922P00000005_BLOCK1 TI205922P00000005 BLOCK1 TI205922S000001 CAACGGTCTCGCACCGTCGCTCTCCTTATTAATAGGCAGCAAGCGCAGTTCGGCTCCTCG 1|Pseudomonas fluorescens|0|512|CDS|Pfl_0001|GI:77456229;InterPro:IPR001957;InterPro:IPR003593;GeneID:3717569|NC_007492|77456228|chromosomal replication initiation protein|NC_007492|565-2088||http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=search&term=Pfl_0001|Pseudomonas fluorescens PfO-1, complete genome.|2006-05-02|GenBank Pfl_0001
TI205922P00000010_BLOCK1 TI205922P00000010 BLOCK1 TI205922S000001 AGAACCCGAATGCCAAGGTCGTGTACTTGCATTCCGAGCGTTTCGTGGCTGACATGGTCA 1|Pseudomonas fluorescens|0|512|CDS|Pfl_0001|GI:77456229;InterPro:IPR001957;InterPro:IPR003593;GeneID:3717569|NC_007492|77456228|chromosomal replication initiation protein|NC_007492|565-2088||http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=search&term=Pfl_0001|Pseudomonas fluorescens PfO-1, complete genome.|2006-05-02|GenBank Pfl_0001
TI205922P00000009_BLOCK1 TI205922P00000009 BLOCK1 TI205922S000001 GCACCGTCGCTCTCCTTATTAATAGGCAGCAAGCGCAGTTCGGCTCCTCGTGCCGCACCG 1|Pseudomonas fluorescens|0|512|CDS|Pfl_0001|GI:77456229;InterPro:IPR001957;InterPro:IPR003593;GeneID:3717569|NC_007492|77456228|chromosomal replication initiation protein|NC_007492|565-2088||http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=search&term=Pfl_0001|Pseudomonas fluorescens PfO-1, complete genome.|2006-05-02|GenBank Pfl_0001
TI205922P00000012_BLOCK1 TI205922P00000012 BLOCK1 TI205922S000001 AGTCGAGTTGCCACACGATGCGGCGTTCTTCATTGCCCAGCGTATTCGCTCCAACGTCCG 1|Pseudomonas fluorescens|0|512|CDS|Pfl_0001|GI:77456229;InterPro:IPR001957;InterPro:IPR003593;GeneID:3717569|NC_007492|77456228|chromosomal replication initiation protein|NC_007492|565-2088||http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=search&term=Pfl_0001|Pseudomonas fluorescens PfO-1, complete genome.|2006-05-02|GenBank Pfl_0001
TI205922P00000004_BLOCK1 TI205922P00000004 BLOCK1 TI205922S000001 ATGGCAACGGTCTCGCACCGTCGCTCTCCTTATTAATAGGCAGCAAGCGCAGTTCGGCTC 1|Pseudomonas fluorescens|0|512|CDS|Pfl_0001|GI:77456229;InterPro:IPR001957;InterPro:IPR003593;GeneID:3717569|NC_007492|77456228|chromosomal replication initiation protein|NC_007492|565-2088||http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=search&term=Pfl_0001|Pseudomonas fluorescens PfO-1, complete genome.|2006-05-02|GenBank Pfl_0001
TI205922P00000001_BLOCK1 TI205922P00000001 BLOCK1 TI205922S000001 TGCGCGAAGAGCTGCCTGCCCAACAATTCAACACCTGGATCCGTCCACTACAGGTCGAAG 1|Pseudomonas fluorescens|0|512|CDS|Pfl_0001|GI:77456229;InterPro:IPR001957;InterPro:IPR003593;GeneID:3717569|NC_007492|77456228|chromosomal replication initiation protein|NC_007492|565-2088||http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=search&term=Pfl_0001|Pseudomonas fluorescens PfO-1, complete genome.|2006-05-02|GenBank Pfl_0001
TI205922P00000007_BLOCK1 TI205922P00000007 BLOCK1 TI205922S000001 TCTCGCACCGTCGCTCTCCTTATTAATAGGCAGCAAGCGCAGTTCGGCTCCTCGTGCCGC 1|Pseudomonas fluorescens|0|512|CDS|Pfl_0001|GI:77456229;InterPro:IPR001957;InterPro:IPR003593;GeneID:3717569|NC_007492|77456228|chromosomal replication initiation protein|NC_007492|565-2088||http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=search&term=Pfl_0001|Pseudomonas fluorescens PfO-1, complete genome.|2006-05-02|GenBank Pfl_0001
TI205922P00000006_BLOCK1 TI205922P00000006 BLOCK1 TI205922S000001 CGGTCTCGCACCGTCGCTCTCCTTATTAATAGGCAGCAAGCGCAGTTCGGCTCCTCGTGC 1|Pseudomonas fluorescens|0|512|CDS|Pfl_0001|GI:77456229;InterPro:IPR001957;InterPro:IPR003593;GeneID:3717569|NC_007492|77456228|chromosomal replication initiation protein|NC_007492|565-2088||http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=search&term=Pfl_0001|Pseudomonas fluorescens PfO-1, complete genome.|2006-05-02|GenBank Pfl_0001
TI205922P00000003_BLOCK1 TI205922P00000003 BLOCK1 TI205922S000001 GAGCATGGCAACGGTCTCGCACCGTCGCTCTCCTTATTAATAGGCAGCAAGCGCAGTTCG 1|Pseudomonas fluorescens|0|512|CDS|Pfl_0001|GI:77456229;InterPro:IPR001957;InterPro:IPR003593;GeneID:3717569|NC_007492|77456228|chromosomal replication initiation protein|NC_007492|565-2088||http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=search&term=Pfl_0001|Pseudomonas fluorescens PfO-1, complete genome.|2006-05-02|GenBank Pfl_0001
TI205922P00000002_BLOCK1 TI205922P00000002 BLOCK1 TI205922S000001 GGATGAGCATGGCAACGGTCTCGCACCGTCGCTCTCCTTATTAATAGGCAGCAAGCGCAG 1|Pseudomonas fluorescens|0|512|CDS|Pfl_0001|GI:77456229;InterPro:IPR001957;InterPro:IPR003593;GeneID:3717569|NC_007492|77456228|chromosomal replication initiation protein|NC_007492|565-2088||http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=search&term=Pfl_0001|Pseudomonas fluorescens PfO-1, complete genome.|2006-05-02|GenBank Pfl_0001
TI205922P00000013_BLOCK2 TI205922P00000013 BLOCK2 TI205922S000001 CGTGTTGCACGCCTGCCGCAAGATCAACGAACTTAAGGAATCCGACGCGGACATCCGCGA 1|Pseudomonas fluorescens|0|512|CDS|Pfl_0001|GI:77456229;InterPro:IPR001957;InterPro:IPR003593;GeneID:3717569|NC_007492|77456228|chromosomal replication initiation protein|NC_007492|565-2088||http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=search&term=Pfl_0001|Pseudomonas fluorescens PfO-1, complete genome.|2006-05-02|GenBank Pfl_0001
TI205922P00000011_BLOCK2 TI205922P00000011 BLOCK2 TI205922S000001 TTCAACGCCCTGCTTGAAGGTGGCCAGCAGGTCATTCTCACCAGTGACCGCTACCCGAAA 1|Pseudomonas fluorescens|0|512|CDS|Pfl_0001|GI:77456229;InterPro:IPR001957;InterPro:IPR003593;GeneID:3717569|NC_007492|77456228|chromosomal replication initiation protein|NC_007492|565-2088||http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=search&term=Pfl_0001|Pseudomonas fluorescens PfO-1, complete genome.|2006-05-02|GenBank Pfl_0001
TI205922P00000008_BLOCK2 TI205922P00000008 BLOCK2 TI205922S000001 TCGCACCGTCGCTCTCCTTATTAATAGGCAGCAAGCGCAGTTCGGCTCCTCGTGCCGCAC 1|Pseudomonas fluorescens|0|512|CDS|Pfl_0001|GI:77456229;InterPro:IPR001957;InterPro:IPR003593;GeneID:3717569|NC_007492|77456228|chromosomal replication initiation protein|NC_007492|565-2088||http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=search&term=Pfl_0001|Pseudomonas fluorescens PfO-1, complete genome.|2006-05-02|GenBank Pfl_0001
TI205922P00000005_BLOCK2 TI205922P00000005 BLOCK2 TI205922S000001 CAACGGTCTCGCACCGTCGCTCTCCTTATTAATAGGCAGCAAGCGCAGTTCGGCTCCTCG 1|Pseudomonas fluorescens|0|512|CDS|Pfl_0001|GI:77456229;InterPro:IPR001957;InterPro:IPR003593;GeneID:3717569|NC_007492|77456228|chromosomal replication initiation protein|NC_007492|565-2088||http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=search&term=Pfl_0001|Pseudomonas fluorescens PfO-1, complete genome.|2006-05-02|GenBank Pfl_0001
TI205922P00000010_BLOCK2 TI205922P00000010 BLOCK2 TI205922S000001 AGAACCCGAATGCCAAGGTCGTGTACTTGCATTCCGAGCGTTTCGTGGCTGACATGGTCA 1|Pseudomonas fluorescens|0|512|CDS|Pfl_0001|GI:77456229;InterPro:IPR001957;InterPro:IPR003593;GeneID:3717569|NC_007492|77456228|chromosomal replication initiation protein|NC_007492|565-2088||http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=search&term=Pfl_0001|Pseudomonas fluorescens PfO-1, complete genome.|2006-05-02|GenBank Pfl_0001
TI205922P00000009_BLOCK2 TI205922P00000009 BLOCK2 TI205922S000001 GCACCGTCGCTCTCCTTATTAATAGGCAGCAAGCGCAGTTCGGCTCCTCGTGCCGCACCG 1|Pseudomonas fluorescens|0|512|CDS|Pfl_0001|GI:77456229;InterPro:IPR001957;InterPro:IPR003593;GeneID:3717569|NC_007492|77456228|chromosomal replication initiation protein|NC_007492|565-2088||http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=search&term=Pfl_0001|Pseudomonas fluorescens PfO-1, complete genome.|2006-05-02|GenBank Pfl_0001
TI205922P00000012_BLOCK2 TI205922P00000012 BLOCK2 TI205922S000001 AGTCGAGTTGCCACACGATGCGGCGTTCTTCATTGCCCAGCGTATTCGCTCCAACGTCCG 1|Pseudomonas fluorescens|0|512|CDS|Pfl_0001|GI:77456229;InterPro:IPR001957;InterPro:IPR003593;GeneID:3717569|NC_007492|77456228|chromosomal replication initiation protein|NC_007492|565-2088||http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene&cmd=search&term=Pfl_0001|Pseudomonas fluorescens PfO-1, complete genome.|2006-05-02|GenBank Pfl_0001

Total number of rows: 372840

Table truncated, full table size 172440 Kbytes.




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Supplementary file Size Download File type/resource
GPL14909_2006_07_27_TI205922_60mer.ndf.gz 21.1 Mb (ftp)(http) NDF
GPL14909_2006_07_27_TI205922_60mer.ngd.gz 273.6 Kb (ftp)(http) NGD

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