GEO Accession viewer

GSE37453	Extensive alternative polyadenylation during zebrafish development
GSE38575	Whole Transcriptome RNA Sequencing Detects Multiple 1a,25-Dihydroxyvitamin D3-Sensitive Metabolic Pathways in Zebrafish Embryos
GSE38786	Id2a knockdown in zebrafish retina
GSE39780	Zygotic gene activatory network in zebrafish is globally controlled by Pou5f1 SoxB1 enhancers
GSE41988	Targeting oncogene expression to endothelial cells induces proliferation of the myelo-erythroid lineage by repressing the notch pathway
GSE42846	Marker gene discovery for Staphylococcus epidermidis infection in zebrafish embryos (RNA-Seq)
GSE42847	Marker gene discovery for Staphylococcus epidermidis infection in zebrafish embryos
GSE44075	Sperm but not oocyte DNA methylome is inherited by zebrafish early embyros
GSE44233	Comparison of cardiomyocyte transcripts after knockdown of Gata4 in zebrafish embryos
GSE44269	Canonical Nucleosome Organization at Promoters Forms During Genome Activation
GSE44351	Gene expression profiling of zebrafish embryos at 5 days post fertilization [Illumina RNA-Seq]
GSE44352	Gene expression profiling of zebrafish embryos at 5 days post fertilization
GSE45209	MicroRNA-146 function in the innate immune response of zebrafish embryos to Salmonella typhimurium infection [RNA-seq]
GSE45410	MicroRNA-146 function in the innate immune response of zebrafish embryos to Salmonella typhimurium infection
GSE45532	Pbx and Prdm1a transcription factors differentially regulate subsets of the fast skeletal muscle program in zebrafish
GSE45699	Transcriptome analysis of the Zebrafish model of Diamond-Blackfan Anemia from RPS19 deficiency via p53-dependent and -independent pathways
GSE46387	Gene Expression Analysis of Zebrafish Melanocytes, Iridophores, and Retinal Pigmented Epithelium Reveals Indicators of Biological Function and Developmental Origin
GSE46512	Ribosome Profiling over a Zebrafish Developmental Timecourse
GSE47558	Nanog, SoxB1 and Pou5f1/Oct4 regulate widespread zygotic gene activation during the maternal-to-zygotic transition
GSE47644	Conservation and divergence of regulatory strategies and the origin of tetrapod digits
GSE47709	Identification of zygotically transcribed genes in zebrafish by 4-thio-UTP metabolic labeling
GSE48254	A Cdx4-Sall4 regulatory module controls the transition from mesoderm formation to embryonic hematopoiesis
GSE49186	Autophagy regulator DRAM1 functions downstream of MYD88 in defense against tuberculosis (RNA-seq)
GSE49188	Autophagy regulator DRAM1 functions downstream of MYD88 in defense against tuberculosis
GSE50203	Transcriptome analysis of heart regeneration in adult zebrafish
GSE50717	Genome-scale DNA methylation maps of Zebrafish Muller glia during retina regeneration
GSE51036	PARN mediates 3'-end trimming of Argonaute-cleaved precursor microRNAs
GSE51278	De Novo Purine Synthesis Mediates Circadian Control of Cell Cycle in Zebrafish (HTS)
GSE51279	De Novo Purine Synthesis Mediates Circadian Control of Cell Cycle in Zebrafish
GSE51326	Assessment of hematopoietic failure due to RPL11 deficiency in a zebrafish model of Diamond–Blackfan anemia by deep sequencing
GSE51893	Identification of genes differentially expressed in MZeomesa embryos compared with wild-type
GSE51894	Smad2 and Eomesa
GSE52110	Whole genome methylation profiling in developing and developed Zebrafish
GSE52605	Overexpression of UHRF1 drives DNA hypomethylation and hepatocellular carcinoma
GSE52703	Developmental enhancers revealed by extensive DNA methylome maps of zebrafish early embryos (MeDIP-seq)
GSE52704	Developmental enhancers revealed by extensive DNA methylome maps of zebrafish early embryos (MRE-seq)
GSE52706	Developmental enhancers revealed by extensive DNA methylome maps of zebrafish early embryos
GSE52809	Poly(A)-tail profiling reveals an embryonic switch in translational control
GSE52830	Obesity-associated variants within FTO form long-range functional connections with IRX3
GSE53022	Expression profiling in the heart of wild-type and kctd10 mutant zebrafish larvae
GSE53334	Silencing of odorant receptor gene expression by G protein βγ signaling ensures the expression of one odorant receptor per olfactory sensory neuron
GSE53693	Identification of small ORFs in vertebrates using ribosome footprinting and evolutionary conservation
GSE54152	Systematic Transcriptome Analysis of Zebrafish Model of Diamond-Blackfan Anemia from RPS24 Deficiency (mRNA-Seq)
GSE54259	Systematic Transcriptome Analysis of Zebrafish Model of Diamond-Blackfan Anemia from RPS24 Deficiency (miRNA-Seq)
GSE54270	Systematic Transcriptome Analysis of Zebrafish Model of Diamond-Blackfan Anemia from RPS24 Deficiency
GSE54885	Macrophage-Expressed Perforins Mpeg1 and Mpeg1.2 Have an Anti-Bacterial Function in Zebrafish
GSE56176	Gene expression analysis of hair cell regeneration in the zebrafish lateral line
GSE56977	A high resolution sequencing and modeling identifies distinct dynamic RNA regulatory strategies
GSE57169	Deep sequencing of small RNA facilitates tissue and sex associated microRNA discovery in zebrafish
GSE57792	Gene expression profiling of zebrafish embryos at 5 days post fertilization
GSE58230	Phagocytosis of mycobacteria by zebrafish macrophages is dependent on the scavenger receptor Marco, a key control factor of pro-inflammatory signalling
GSE58344	Transcriptome Analysis Reveals a Comprehensive Regulatory Network Involved in the Zebrafish Model of Diamond-Blackfan Anemia from RPL5 Deficiency [miRNA-Seq]
GSE58346	Transcriptome Analysis Reveals a Comprehensive Regulatory Network Involved in the Zebrafish Model of Diamond-Blackfan Anemia from RPL5 Deficiency [RNA-Seq]
GSE58347	Transcriptome Analysis Reveals a Comprehensive Regulatory Network Involved in the Zebrafish Model of Diamond-Blackfan Anemia from RPL5 Deficiency
GSE59916	Genome-wide DNA methylation map of Zebrafish male and female brain
GSE59917	Genome-wide DNA methylation map of Zebrafish liver
GSE59968	Next Generation Sequencing (NGS) of zebrafish larvae transcriptome by 2,2',4,4'-tetrabromodiphenyl ether (BDE47) treatment
GSE60619	Danio rerio high resolution developmental transcriptomic time-course
GSE61063	Chromatin structure dynamics of hoxa13a, hoxa13b and hoxd13a loci during zebrafish development.
GSE61065	ATAC-seq data in mouse and zebrafish limbs
GSE61202	Identification of differentially expressed genes during development of the zebrafish pineal complex using RNA sequencing
GSE61931	Adenylation of maternally inherited microRNAs by Wispy
GSE61984	Identification and Characterization of MicroRNAs in Zebrafish Spermatozoa by Illumina Sequencing
GSE62221	Global identification of the gene networks and cis-regulatory elements of the cold response in zebrafish
GSE62527	A spinal opsin controls early neural activity and drives a behavioral light response
GSE63133	Spring Varaemia of Carp Virus (SVCV) infection of adult zebrafish
GSE63191	RNA sequencing of the developing zebrafish head
GSE64198	Next Generation Sequencing Identifies Differentially Expressed Genes in Zebrafish Embryos and Larvae Following Benzo[a]pyrene Exposure
GSE65556	Transcriptomics analysis of gene expression in 10 embryo development stages of Danio rerio
GSE66362	RNA-seq of zebrafish brain, liver and skin during perturbation with rotenone at young and old age
GSE66860	RNA-seq of control and foxo3b MO zebrafish cells.
GSE66900	Evolutionary comparison reveals that diverging CCCTC-binding factor (CTCF) sites are signatures of ancestral topological associating domains borders
GSE67479	RNA-seq expression profiling of hair-cells in zebrafish
GSE67480	Expression profiling of Murine and Zebrafish hair cells
GSE67648	Genome-wide analysis of Smad2 and FoxH1 binding sites in zebrafish blastula
GSE68087	Active DNA demethylation at enhancers during the vertebrate phylotypic period
GSE68666	Transcriptional profiling of zebrafish embryos developmentally exposed to oxygenated PAHs 1,9-benz-10-anthrone and benzanthracene-7,12-dione
GSE68737	A single 3D chromatin compartment in amphioxus Hox cluster suggests a stepwise evolutionary origin for vertebrate Hox bimodal regulatory topologies
GSE68920	RNAseq profiling of zebrafish larval macrophages reveals similarities with human M1 and M2 transcriptome signatures
GSE69965	Transcriptome comparison reveals a genetic network regulating the lower temperature limit in fish
GSE70185	The mid-developmental transition and the evolution of animal body plans
GSE70549	RNA-Seq matched to ribosome profiling over a zebrafish developmental timecourse
GSE70623	Transcriptome-wide profiling of Spadetail-regulated genes in early somite progenitors
GSE70727	Genome-wide mapping of Hif-1α binding sites in zebrafish [ChIP-seq]
GSE70847	Genome-wide epigenetic cross-talk between DNA methylation and H3K27me3 in zebrafish embryos
GSE70886	Genome-wide mapping of Hif-1α binding sites in zebrafish
GSE71567	DNA methylome patterns of zebrafish cells under cold pressure
GSE71609	Codon usage and 3′ UTR length determine maternal mRNA stability in zebrafish
GSE71681	Yap and Taz regulate retinal pigment epithelial cell fate
GSE72322	Identifying molecular mechanisms of neural crest (NC) EMT and cell migration
GSE72985	Accelerated cartilage differentiation distinguishes the lower from the upper vertebrate face
GSE73522	Heart Chamber Evolution Reveals Roles of Gene/Genome Duplications on Continuous Character Evolution in Vertebrates
GSE73615	Female Reproductive Impacts of Dietary Methylmercury in Yellow Perch (Perca flavescens) and Zebrafish (Danio rerio)
GSE73794	Methylmercury (MeHg) induced Transgenerational Inheritance of Brain Transcriptome in Zebrafish (Danio rerio) [brain]
GSE73795	Methylmercury (MeHg) induced Transgenerational Inheritance of Retinal Transcriptome in Zebrafish (Danio rerio) [retina]
GSE73797	Methylmercury (MeHg) induced Transgenerational Inheritance of Brain Transcriptome in Zebrafish (Danio rerio)
GSE74244	Deep sequencing of mRNA from Danio rerio at five different timepoints in three different tissues (brain, liver, skin)
GSE74326	Amyloid-β42-induced neurodegeneration enhances stem cell plasticity and neurogenesis in adult zebrafish brain
GSE74415	Small RNA and mRNA expression profiling during zebrafish caudal fin regeneration
GSE74416	Gene expression alteration associated with early embryonic MeHg exposure in zebrafish (Danio rerio)
GSE74929	Epigenetic regulation of hematopoiesis by DNA methylation
GSE75583	Single epicardial cell transcriptome sequencing identifies Caveolin-1 as an essential factor in zebrafish heart regeneration
GSE75728	Injury-dependent hydrogen peroxide oxidation of IKK-alpha regulates keratinocyte migration through induction of EGF
GSE75894	Modulation of tissue repair by regeneration enhancer elements.
GSE75921	Next Generation Sequencing (NGS) of zebrafish embryos transcriptome by pentachlorophenol (PCP) treatment
GSE76212	Dynamic RNA-protein interactions underlie the zebrafish maternal-to-zygotic transition
GSE76499	Transcriptomic approaches in the zebrafish model for tuberculosis – insights into host- and pathogen-specific determinants of the innate immune response
GSE76780	Transcriptional profiling through RNA-seq of zebrafish larval liver after exposure to biliatresone, a biliary toxin.
GSE77025	RNA sequencing of adult zebrafish spinal cord
GSE78106	Trancriptome study of zebrafish mutant fn10a
GSE78954	RNAseq profiling of FACS-sorted zebrafish larval macrophages reveals similarities with human M1 and M2 transcriptome signatures
GSE79161	Tdrd6a recruits Ziwi-bound piRNAs and coordinates deposition of germ plasm mRNAs into primordial germ cells [RIP-Seq]
GSE79285	Tdrd6a recruits Ziwi-bound piRNAs and coordinates deposition of germ plasm mRNAs into primordial germ cells
GSE80768	Gene expression data from NRAS-driven CNS-PNET zebrafish brain tumors and normal brain.
GSE81773	Quantitative Analysis of ZF4 cells Transcriptomes when Infected with Edwardsiella tarda
GSE82246	Yap reprograms glutamine metabolism to increase nucleotide biosynthesis and enable liver growth
GSE83466	The transcription factor, Nuclear factor, erythoid 2 (Nfe2), is a regulator of the oxidative stress response during Danio rerio development
GSE84420	Altered basal and TCDD-induced gene expression in zebrafish embryos made AHRRa-null by ZFN-mediated gene targeting
GSE84600	ChIP-seq analysis of Rad21 binding during genome activation
GSE84601	RNA-seq analysis comparing WT, Rad21 MO and CTCF MO zebrafish embryos at stages (2.5, 3.3, 4.5, 5.3, 10 hpf) pre and post ZGA (zygotic genome activation)
GSE84602	Cohesin facilitates zygotic genome activation in Zebrafish
GSE84845	Next Generation Sequencing (NGS) of zebrafish larvae microRNA expression profilling by 2,2',4,4'-tetrabromodiphenyl ether (BDE47) treatment
GSE85416	Systematic identification and characterization of long non-coding RNAs in zebrafish through RNA-Seq
GSE86023	RNASeq of OMP and TRPC2 neuronal population of zebrafish olfactory sensory neurons
GSE87192	Genome-wide maps of DNA methylation in zebrafish larvae through MeDIP-sequencing after benzo[a]pyrene exposure
GSE87604	The embryo-larval and adult parts of the zebrafish major alpha/beta-globin gene locus are functionally and structurally independent
GSE87704	Transcriptional responses in 6.5 dpf larval zebrafish guts upon feeding a high-fat or low-fat meal
GSE89350	Differential gene expression analysis of 4days post fertilization (dpf) wildtype and flt1ka601zebrafish mutants to identify venous sprouting associated genes
GSE89444	Identification of enhancer regulatory elements that direct epicardial gene expression during zebrafish heart regeneration
GSE89670	The Biotagging toolkit for analysis of specific cell populations in zebrafish reveals gene regulatory logic encoded in the nuclear transcriptome
GSE89815	N6-methyladenosine dynamics during early vertebrate embryogenesis
GSE90971	Ikk2 regulates cytokinesis during vertebrate development (Trancriptome profiling from the wild-type and Ikk2 maternal-zygotic mutant zebrafish)
GSE91024	Genome-wide expression profiling of whole of uhrf1 mutant zebrafish compared to WT siblings at 120 hpf
GSE92489	Transcriptome and Functional Analyses Reveal Roles For Regulators of Epigenetic States, Micro RNA Processing, And Long Non-Coding RNA In Myocyte Dedifferentiation: Insights Into Reprogramming A “Post-Mitotic” Cell
GSE92639	Identification of a specific 13-miRNA expression signature during follicle activation in Zebrafish
GSE92760	Transcriptomic, Proteomic, and Metabolomic Landscape of Positional Memory in the Caudal Fin of Zebrafish
GSE93310	Developmental Exposure To PCB153 Alters Genes Related To Circadian Rhythm And Metabolism In Zebrafish (Danio rerio)
GSE93927	Transcriptomics analysis of gene expressions and DNA 5mC enrichment levels in control and dnmt1 morphants zebrafish embryos
GSE94933	Genomic dissection of conserved transcriptional regulation in intestinal epithelial cells [zebrafish]
GSE94936	Genomic dissection of conserved transcriptional regulation in intestinal epithelial cells
GSE95679	mRNA sequencing analysis of zebrafish embryos, Dcp2 inhibition
GSE95812	Functional Analysis of Regional Gene Expression in Zebrafish Craniofacial Development
GSE96929	H3K27me3 deposition over sarcomeric and cytoskeletal promoters is required for cardiomyocyte cytokinesis and wound invasion during zebrafish heart regeneration [RNA-seq]
GSE96930	H3K27me3-mediated silencing of structural genes is required for zebrafish heart regeneration
GSE97096	Oncogenic BRAF disrupts thyroid morphogenesis and function via Twist expression
GSE97125	Proteolytic processing of LRP2 on RPE cells regulates BMP activity to control eye size and refractive error
GSE98888	Underestimation of inadvertent morpholino RNA targets: evidence from the study of Danio rerio Ser/Arg-rich splicing factors using gene editing tools
GSE99285	Next Generation Sequencing Study of Circadian Changes in Transcriptome of Zebrafish Pineal Gland and Eye
GSE99567	c-MYC drives neuroblastoma tumorigenesis and retinoic acid resistance in zebrafish [RNA-Seq]
GSE99572	c-MYC drives neuroblastoma tumorigenesis and retinoic acid resistance in zebrafish
GSE100912	Dissecting hematopoietic and renal cell heterogeneity in adult zebrafish at single cell resolution using RNA sequencing [bulk RNA-seq]
GSE100913	Dissecting hematopoietic and renal cell heterogeneity in adult zebrafish at single cell resolution using RNA sequencing
GSE101544	Expression profiling of the retina of pde6c, a zebrafish model of retinal degeneration
GSE102059	The plasticizer Bisphenol A favors cancer progression in adult zebrafish by perturbing the epigenome: A systems level analysis of the miRNome (miRNA).
GSE102060	The plasticizer Bisphenol A favors cancer progression in adult zebrafish by perturbing the epigenome: A systems level analysis of the miRNome (mRNA).
GSE102425	Sequencing of Danio rerio brain for 2 age groups after Rotenone treatment
GSE102428	Sequencing of Danio rerio liver for 2 age groups
GSE102433	Sequencing of Danio rerio skin for 2 age groups
GSE102662	Prep1 and Pbx2/4 dependent genes in zebraffish embryos
GSE102793	A requirement for dual-specificity phosphatase 6 in zebrafish gametogenesis
GSE103090	Vegetally localised Vrtn functions as a novel repressor to modulate bmp2b transcription during dorsoventral patterning in zebrafish
GSE103120	The DiGeorge Syndrome gene TBX1 is required to specify the nkx2.5+ cardiopharyngeal lineage
GSE104221	Integrative analysis of transcriptional and DNA methylation changes associated with PCB126 exposure in adult zebrafish (Danio rerio)
GSE104953	Differential gene expression in the liver of zebrafish larvae exposed to 1 mM inorganic arsenic from 4-120 hpf
GSE105766	Differential DNA methylation following developmental exposure to triclosan (TCS) in 7dpf zebrafish larvae
GSE106431	Functional genomic and transcriptomic analysis of amphioxus and the origin of vertebrate genomic traits
GSE106676	From pioneer to repressor: Bimodal foxd3 activity dynamically remodels neural crest regulatory landscape in vivo
GSE106722	Differential transcriptomes of developing zebrafish embryos from commencement to completion of gastrulation
GSE107228	Endocardial Notch Signaling Promotes Cardiomyocyte Proliferation in the Regenerating Zebrafish Heart through Wnt Pathway Antagonism
GSE107682	Tdrd6a recruits Ziwi-bound piRNAs and coordinates deposition of germ plasm mRNAs into primordial germ cells [small RNA]
GSE108435	RNA profiling of the liver and gut tissues in zebrafish (Danio rerio) [mRNA]
GSE108436	RNA profiling of the liver and gut tissues in zebrafish (Danio rerio) [miRNA]
GSE108437	RNA profiling of the liver and gut tissues in zebrafish (Danio rerio)
GSE108855	Cell of origin dictates aggression and stem cell activity in acute lymphoblastic leukemia
GSE111882	RNAseq of wild type zebrafish germline (ovary, oocyte, testis)
GSE112826	Vitamin D globally accelerates growth and regeneration in zebrafish
GSE113396	Potential role of gas6 in zebrafish hindbrain development
GSE113398	Potential role of hoxb1b in zebrafish development
GSE113437	Analysis of novel caudal hindbrain genes reveals different regulatory logic for gene expression in rhombomere 4 versus 5/6 in embryonic zebrafish
GSE113676	Dose-dependent transcriptomic responses of zebrafish embryos to Bisphenol A
GSE114038	The Polycomb Group protein Rnf2/Ring1b is essential for zebrafish development and cardiogenesis
GSE114356	This study examined gene expression in zebrafish embryos exposed to 0 (0.01% DMSO), 16 µM, or 32 µM perfluorobutane sulfonate.
GSE115945	Functional genomic and transcriptomic analysis of amphioxus and the origin of vertebrate genomic traits [4C-seq]
GSE116352	Pericentromeric hypomethylation elicits an interferon response in an animal model of ICF syndrome [BiSulfite-seq]
GSE116360	Pericentromeric hypomethylation elicits an interferon response in an animal model of ICF syndrome
GSE118577	Single cell analyses of Amyloid-beta42 and Interleukin-4 on neural stem cell plasticity I
GSE118599	Single cell analyses of Amyloid-beta42 and Interleukin-4 on neural stem cell plasticity IV
GSE119024	Yap regulates glucose utilization and sustains nucleotide synthesis to enable organ growth
GSE119070	Loss of maternal and zygotic ezh2 reveals the function of Polycomb repression in maintenance of gene expression domain after the body plan is established in zebrafish
GSE119332	The Lysosomal Transcription Factor TFEB regulates myelination downstream of the Rag-Ragulator complex.
GSE119623	RNA-seq of zebrafish embryo dorsal forerunner cells lacking Vestigial like 4 like (Vgll4l) or Yes associated protein 1 (Yap1)/ WW domain containing transcription regulator 1 (Wwtr1/Taz) activities
GSE119718	Morphogenesis and differentiation of embryonic vascular smooth muscle cells in zebrafish
GSE121990	Enhanced Reduced Representation Bisulfite Sequencing of 48hpf WT and tet2/3 DM dissected heart
GSE121991	TETs Regulate Proepicardial Cell Migration through Extracellular Matrix Organization during Zebrafish Cardiogenesis
GSE123026	Whole transcriptomic analysis of zebrafish embryos of dyrk1aakrb1, dyrk1aa knock out mutant and Wild Type (WT) (+/+) in the background of Tg(kdrl:egfp) [32 hpf]
GSE123036	Modelling pancreatic beta-cell inflammation in zebrafish identifies a natural product for human beta-cell protection
GSE124162	Interleukin-4 induces neural stem cell plasticity by antagonizing Serotonin/HTR1 signaling that suppresses BDNF/NGFRA in adult zebrafish Alzheimer's disease model
GSE124970	Lysosome Rich Enterocytes mediate protein absorption in the vertebrate gut
GSE125072	Unravelling the mechanisms of PFOS toxicity by combining morphological and transcriptomic analyses in zebrafish embryos
GSE126617	Sec14l3 potentiates VEGFR2 signaling to regulate zebrafish vasculogenesis
GSE128900	Identification of transcriptome changes associated with toxic effects of methanolic coal dust extract on fish early life stage by RNASeq
GSE128984	Regulation of zebrafish dorsoventral patterning by phase separation of RNA-binding protein rbm14
GSE129081	Mutations in RABL3 Alter KRAS Prenylation and are Associated with Hereditary Pancreatic Cancer
GSE131307	GAS7 Deficiency Promotes Metastasis of MYCN-driven Neuroblastoma
GSE131332	Oncogenic CDK13 Mutations Impede Nuclear RNA Surveillance (zfChIPseq)
GSE131333	Oncogenic CDK13 Mutations Impede Nuclear RNA Surveillance (zfRNAseq)
GSE131334	Oncogenic CDK13 Mutations Impede Nuclear RNA Surveillance
GSE131759	Identification of novel microRNAs and characterization of microRNA expression profiles in zebrafish ovarian follicular cells
GSE132304	Tissue-specific transcriptomes reveal gene expression trajectories in two maturing skin epithelial layers in zebrafish embryos
GSE133076	Progression of liver tumor was promoted by tris(1,3-dichloro-2-propyl)phosphate through the induction of inflammatory responses in krasV12 transgenic zebrafish
GSE133990	FoxH1 represses miR-430 during early embryonic development of zebrafish via non-canonical regulation
GSE134055	A map of cis-regulatory elements and 3D genome structures in zebrafish
GSE135019	Role of the Exon Junction Complex in Danio rerio
GSE135823	To characterize bag3 cardiomyopathy model in adult zebrafish through RNA-Seq
GSE136003	Rbm24 functions as a critical translational regulator to pretect crystallin proteins accumulation for lens transparency. RNA-seq data of 33 hpf rbm24a-/- and wildtype embryo, head explant
GSE136006	Rbm24 functions as a critical translational regulator to pretect crystallin proteins accumulation for lens transparency. RNA-seq data of 33 hpf rbm24a-/- and wildtype zebrafish embryo
GSE136349	Gene expression profile of zebrafish tet2 mutant
GSE136554	Ancient genomic regulatory blocks are a major source for gene deserts in vertebrates after whole genome duplications
GSE139599	Transcriptomic effects of tributyltin (TBT) in zebrafish eleutheroembryos. A functional benchmark dose analysis.
GSE139808	mRNA profile of zebrafish periderm at 4-somite stage
GSE140241	Zebrafish periderm at 4-somite stage
GSE141425	A single cell transcriptome atlas of the developing zebrafish hindbrain [Fgf20a]
GSE141428	A single cell transcriptome atlas of the developing zebrafish hindbrain
GSE142238	Cross-species analysis of melanoma enhancer logic using deep learning
GSE143306	Pou5f3 and Sox19b select gene expression repertoire at zebrafish Zygotic Genome Activation
GSE143416	Withdrawal from chronic alcohol exposure leads to tissue-specific recovery of the zebrafish transcriptome
GSE143439	Nanog affects establishment of chromatin marks at zebrafish Zygotic Genome Activation
GSE144117	Oxidative phosphorylation promotes primary melanoma invasion
GSE144689	High-throughput sequencing of zebrafish wild-type and duox mutant larvae
GSE144831	Cardiac-tbx20 overexpression enhances heart regeneration by promoting cardiomyocytes dedifferentiation and endocardial activation
GSE145330	Injury and apobec2-dependent regulation of zebrafish Muller glial cell gene expression
GSE147253	5’ half of specific tRNAs feeds back to promote corresponding tRNA gene transcription in vertebrate embryos [small RNA-Seq, ssDRIP-seq]
GSE148971	Trdmt1-KO Group and Control in Zebrafish
GSE149081	Pancreatic and intestinal endocrine cells share common transcriptomic signatures and gene regulatory networks
GSE149942	RNAseq expression analysis of FACS-sorted macrophages from cxcr3.2 mutant and wt zebrafish larvae
GSE150376	mRNA seq of WT and tp53 e7/e7 mutant in zebrafish intestine with or without gut microbiota.
GSE151273	Prpf31 is essential for the survival and differentiation of retinal progenitor cells by modulating alternative splicing
GSE152759	Bulk RNA-seq data to assess an improved zebrafish transcriptome annotation
GSE153386	Next Generation Sequencing Based RNAseq Analysis of lri35-/- mutant zebrafish larvae at 5 dpf
GSE154562	Mechanism suppressing transcription of the globin genes in Danio rerio nonerythroid cells
GSE154895	Rab11a-recycling endosomes function to regulate cell signaling during retinal neurogenesis in zebrafish
GSE158566	The RNA helicase Ddx21 controls Vegfc-driven developmental lymphangiogenesis by balancing endothelial cell ribosome biogenesis and p53-p21 signalling [zebrafish]
GSE159560	Calcineurin Controls Proximodistal Blastema Polarity in Zebrafish Fin Regeneration
GSE160475	Zebrafish as an animal model for the antiviral RNA interference pathway
GSE161117	Four-month-old zebrafish brain transcriptome analysis of mitofusin 2 (mfn2) loss-of-function mutation (hu3528 allele) homozygous, heterozygous, and wild type siblings
GSE164128	Elucidating The Role Of ∆9-Tetrahydrocannabinol (Thc) And Cannabidiol (Cbd) In Developmental Toxicity
GSE165203	RNA-seq Analysis of sibling and dhx38-- zebrafish
GSE167416	RNA-sequencing analysis of ZsYellow-negative cells and ZsYellow-positive cardiopharyngeal progenitors and cardiomyocytes purified from the same 14-16 somites stage Tg(nkx2.5:ZsYellow) zebrafish embryos
GSE169013	Phenotypically anchored mRNA and miRNA expression profiling in zebrafish reveals flame retardant chemical toxicity networks
GSE171619	Quantitative Analysis of Transcriptomes of Control and BP-3 exposure embryos (zebrafish) by RNA-sequencing
GSE171661	The splicing factor Prpf31 is required for hematopoietic stem and progenitor cell expansion during zebrafish embryogenesis
GSE171944	RNA seq data examining response to chemical treatment to build the first gene co-expression network of zebrafish
GSE172418	TCDD exposure in control and wfikkn1mutant zebrafish at 48 hpf
GSE173649	Comparitive transcriptome analysis of two zebrafish mutants goosepimples/myovb and romeharsha
GSE175491	Genetic compensation for cilia defects in cep290/NPHP6 mutants by upregulation of cilia-associated small GTPases
GSE175979	polyA+ RNA seq of zebrafish gonad at 25 dpf and 30dpf
GSE176129	Integrated molecular analysis identifies new developmental pericyte markers in zebrafish
GSE178511	Investigation of mettl4 mediated alterative splicing variation
GSE179335	Transcriptome signatures of wastewater effluent exposure in larval zebrafish vary with seasonal mixture composition in an effluent-dominated stream
GSE180330	The RNA helicase Ddx21 controls Vegfc-driven developmental lymphangiogenesis by balancing endothelial cell ribosome biogenesis and p53-p21 signalling
GSE181602	Next Generation Sequencing Based RNAseq Analysis of lri25-/- mutant zebrafish larvae at 5 dpf.
GSE181684	5’ half of specific tRNAs feeds back to promote corresponding tRNA gene transcription in vertebrate embryos
GSE182868	Next Generation Sequencing of zebrafish spinal cord transcriptomes before and after injury
GSE182869	Next Generation Sequencing of zebrafish intraspinal serotonergic neurons in the injury segment and distal segments after spinal cord injury
GSE182911	Specialized injury-induced serotonergic neurons promote circuit reorganization and function restoration after spinal cord injury in zebrafish
GSE186576	Sulfonamide functional head group drives developmental toxicity of short-chain per- and polyfluorolkyl substances
GSE190741	PCB126 exposure induced DNA methylation and gene expression changes in adult zebrafish testis
GSE193281	Identification of an evolutionarily conserved domain in Neurod1 essential for triggering enteroendocrine cell differentiation
GSE193591	Cell type specific transcriptome profiling reveals a role for thioredoxin in neutrophils and tumor initiation
GSE194272	RNA-Seq of 24 hours post fertilization zebrafish Kcng4b loss-of-function embryos
GSE196211	High-resolution single cell transcriptome analysis of zebrafish sensory hair cell regeneration
GSE197757	scRNA-seq of roof and floor endothelial cells at 21 hpf and 28 hpf in zebrafish
GSE197927	MITF deficiency and oncogenic GNAQ each promote proliferation programs in zebrafish melanocyte lineage cells
GSE199586	RNA-seq of HNRNPAB morpholino in zebrafish
GSE199758	Binaprofen induced zebrafish liver injury by mitochondria pathway
GSE203631	Multigenerational Effects of Dietary Benzo[a]pyrene Exposure on Behavior, Gene Expression, and DNA Methylation
GSE204989	Developmental exposure to low-level saxitoxin affects neuronal gene expression in zebrafish (Danio rerio)
GSE206903	Control of cranial ectomesenchyme fate by Nr2f nuclear receptors
GSE211424	An injury responsive enhancer promotes heart regeneration in zebrafish
GSE213081	Next Generation Sequencing of zebrafish V2a interneurons in spinal segments rostral to the lesion after spinal cord injury
GSE213126	RNA-seq of microglia from 3-dpf siblings, mafba and mafbb single mutant and DMut zebrafish
GSE217001	Variable phenotypes and penetrance between and within different zebrafish transition zone mutants
GSE223889	Oncogenic CDK13 Mutations Impede Nuclear RNA Surveillance [zf3primeseq]
GSE230044	Single cell resolution of the adult zebrafish intestine under conventional conditions, and in response to an acute, natural infection
GSE234227	Double-stranded RNA triggers a distinct integrated stress response in the early embryo [cas9 tol2]
GSE234229	Double-stranded RNA triggers a distinct integrated stress response in the early embryo [dsRNA tp53]
GSE234230	Double-stranded RNA triggers a distinct integrated stress response in the early embryo
GSE238175	Depletion of tet2 results in age-dependent changes in DNA methylation and gene expression in a zebrafish model of myelodysplastic syndrome [RNAseq]
GSE238176	Depletion of tet2 results in age-dependent changes in DNA methylation and gene expression in a zebrafish model of myelodysplastic syndrome
GSE243993	Molecular blueprints for spinal circuit modules controlling locomotor speed
GSE246374	RNA-seq analysis of the WT and bcas2-KO zebrafish embryos at 3 dpf
GSE265771	Double-stranded RNA triggers a distinct integrated stress response in the early embryo [RNA-seq, Ribo-seq]