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Status
Public on Nov 08, 2011
Title
SBRI_MTuberculosis_12x130K_ver2.0
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Mycobacterium tuberculosis H37Rv Manufacturer
Nimblegen
Manufacture protocol
High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
Catalog number
110405_Mtuber_TR_exp_HX12
Support
glass
Coating
unknown
Description
NimbleGen design name 110405_Mtuber_TR_exp_HX12. Custom designed in house tiled array of 107,936 unique probes covering all 4000 ORFs, sense and antisense, and all intergenic regions.
Contributor(s)
Rustad TR , Morrison R Submission date
Nov 01, 2011
Last update date
Feb 19, 2013
Contact name
Tige Rustad
E-mail(s)
tige.rustad@sbri.org Phone
206-256-7207
Organization name
Seattle Biomedical Research Institute
Department
Pathobiology
Lab
Sherman
Street address
307 Westlake Avenue N, Suite 500
City
Seattle
State/province
WA
ZIP/Postal code
98109
Country
USA
Samples (1093)
GSM889308 , GSM889309 , GSM889310 , GSM889311 , GSM889312 , GSM889313
GSM889314 ,
GSM889315 ,
GSM889316 ,
GSM889317 ,
GSM889318 ,
GSM889319 ,
GSM889320 ,
GSM889321 ,
GSM889322 ,
GSM889323 ,
GSM889324 ,
GSM889325 ,
GSM889326 ,
GSM889327 ,
GSM889328 ,
GSM889329 ,
GSM889330 ,
GSM889331 ,
GSM889341 ,
GSM889342 ,
GSM889343 ,
GSM889344 ,
GSM889345 ,
GSM889346 ,
GSM889347 ,
GSM889348 ,
GSM889349 ,
GSM889350 ,
GSM889351 ,
GSM889352 ,
GSM889353 ,
GSM889354 ,
GSM889355 ,
GSM889356 ,
GSM889357 ,
GSM889358 ,
GSM889359 ,
GSM889360 ,
GSM889361 ,
GSM889362 ,
GSM889363 ,
GSM889364 ,
GSM889365 ,
GSM889366 ,
GSM889367 ,
GSM889368 ,
GSM889369 ,
GSM889370 ,
GSM889371 ,
GSM889372 ,
GSM889373 ,
GSM889374 ,
GSM889375 ,
GSM889376 ,
GSM889377 ,
GSM889378 ,
GSM889379 ,
GSM889380 ,
GSM889381 ,
GSM889382 ,
GSM889383 ,
GSM889384 ,
GSM889385 ,
GSM889386 ,
GSM889387 ,
GSM889388 ,
GSM889389 ,
GSM889390 ,
GSM889391 ,
GSM889392 ,
GSM889393 ,
GSM889394 ,
GSM1004775 ,
GSM1004776 ,
GSM1004777 ,
GSM1004778 ,
GSM1004779 ,
GSM1004780 ,
GSM1004781 ,
GSM1004782 ,
GSM1004783 ,
GSM1084307 ,
GSM1084308 ,
GSM1084309 ,
GSM1084310 ,
GSM1084311 ,
GSM1084312 ,
GSM1084313 ,
GSM1084314 ,
GSM1084315 ,
GSM1084316 ,
GSM1084317 ,
GSM1084318 ,
GSM1084319 ,
GSM1084320 ,
GSM1084321 ,
GSM1084322 ,
GSM1084323 ,
GSM1084324 ,
GSM1084325 ,
GSM1084326 ,
GSM1084327 ,
GSM1084328 ,
GSM1084329 ,
GSM1084330 ,
GSM1084331 ,
GSM1084332 ,
GSM1084333 ,
GSM1084334 ,
GSM1084335 ,
GSM1084336 ,
GSM1084337 ,
GSM1084338 ,
GSM1084339 ,
GSM1084340 ,
GSM1084341 ,
GSM1084342 ,
GSM1084343 ,
GSM1084344 ,
GSM1084345 ,
GSM1084346 ,
GSM1084347 ,
GSM1084348 ,
GSM1084349 ,
GSM1084350 ,
GSM1084351 ,
GSM1084352 ,
GSM1084353 ,
GSM1084354 ,
GSM1084355 ,
GSM1084356 ,
GSM1084357 ,
GSM1084358 ,
GSM1084359 ,
GSM1084360 ,
GSM1084361 ,
GSM1084362 ,
GSM1084363 ,
GSM1084364 ,
GSM1084365 ,
GSM1084366 ,
GSM1084367 ,
GSM1084368 ,
GSM1084369 ,
GSM1084370 ,
GSM1084371 ,
GSM1084372 ,
GSM1084373 ,
GSM1084374 ,
GSM1084375 ,
GSM1084376 ,
GSM1084377 ,
GSM1084378 ,
GSM1084379 ,
GSM1084380 ,
GSM1084381 ,
GSM1084382 ,
GSM1084383 ,
GSM1084384 ,
GSM1084385 ,
GSM1084386 ,
GSM1084387 ,
GSM1084388 ,
GSM1084389 ,
GSM1084390 ,
GSM1084391 ,
GSM1084392 ,
GSM1084393 ,
GSM1084394 ,
GSM1084395 ,
GSM1084396 ,
GSM1084397 ,
GSM1084398 ,
GSM1084399 ,
GSM1084400 ,
GSM1084401 ,
GSM1084402 ,
GSM1084403 ,
GSM1084404 ,
GSM1084405 ,
GSM1084406 ,
GSM1084407 ,
GSM1084408 ,
GSM1084409 ,
GSM1084410 ,
GSM1084411 ,
GSM1084412 ,
GSM1084413 ,
GSM1084414 ,
GSM1084415 ,
GSM1084416 ,
GSM1084417 ,
GSM1084418 ,
GSM1084419 ,
GSM1084420 ,
GSM1084421 ,
GSM1084422 ,
GSM1084423 ,
GSM1084424 ,
GSM1084425 ,
GSM1084426 ,
GSM1084427 ,
GSM1084428 ,
GSM1084429 ,
GSM1084430 ,
GSM1084431 ,
GSM1084432 ,
GSM1084433 ,
GSM1084434 ,
GSM1084435 ,
GSM1084436 ,
GSM1084437 ,
GSM1084438 ,
GSM1084439 ,
GSM1084440 ,
GSM1084441 ,
GSM1084442 ,
GSM1084443 ,
GSM1084444 ,
GSM1084445 ,
GSM1084446 ,
GSM1084447 ,
GSM1084448 ,
GSM1084449 ,
GSM1084450 ,
GSM1084451 ,
GSM1084452 ,
GSM1084453 ,
GSM1084454 ,
GSM1084455 ,
GSM1084456 ,
GSM1084457 ,
GSM1084458 ,
GSM1084459 ,
GSM1084460 ,
GSM1084461 ,
GSM1084462 ,
GSM1084463 ,
GSM1084464 ,
GSM1084465 ,
GSM1084466 ,
GSM1084467 ,
GSM1084468 ,
GSM1084469 ,
GSM1084470 ,
GSM1084471 ,
GSM1084472 ,
GSM1084473 ,
GSM1084474 ,
GSM1084475 ,
GSM1084476 ,
GSM1084477 ,
GSM1084478 ,
GSM1084479 ,
GSM1084480 ,
GSM1084481 ,
GSM1084482 ,
GSM1084483 ,
GSM1084484 ,
GSM1084485 ,
GSM1084486 ,
GSM1084487 ,
GSM1084488 ,
GSM1084489 ,
GSM1084490 ,
GSM1084491 ,
GSM1084492 ,
GSM1084493 ,
GSM1084494 ,
GSM1084495 ,
GSM1084496 ,
GSM1084497 ,
GSM1084498 ,
GSM1084499 ,
GSM1084500 ,
GSM1084501 ,
GSM1084502 ,
GSM1084503 ,
GSM1084504 ,
GSM1084505 ,
GSM1084506 ,
GSM1084507 ,
GSM1084508 ,
GSM1084509 ,
GSM1084510 ,
GSM1084511 ,
GSM1084512 ,
GSM1084513 ,
GSM1084514 ,
GSM1084515 ,
GSM1084516 ,
GSM1084517 ,
GSM1084518 ,
GSM1349744 ,
GSM1349745 ,
GSM1349746 ,
GSM1349747 ,
GSM1349748 ,
GSM1349749 ,
GSM1349750 ,
GSM1349751 ,
GSM1349752 ,
GSM1349753 ,
GSM1349754 ,
GSM1349755 ,
GSM1426365 ,
GSM1426366 ,
GSM1426367 ,
GSM1426368 ,
GSM1426369 ,
GSM1426370 ,
GSM1426371 ,
GSM1426372 ,
GSM1426373 ,
GSM1426374 ,
GSM1426375 ,
GSM1426376 ,
GSM1426377 ,
GSM1426378 ,
GSM1426379 ,
GSM1426380 ,
GSM1426381 ,
GSM1426382 ,
GSM1426383 ,
GSM1426384 ,
GSM1426385 ,
GSM1426386 ,
GSM1426387 ,
GSM1426388 ,
GSM1426389 ,
GSM1426390 ,
GSM1426391 ,
GSM1426392 ,
GSM1426393 ,
GSM1426394 ,
GSM1426395 ,
GSM1426396 ,
GSM1426397 ,
GSM1426398 ,
GSM1426399 ,
GSM1426400 ,
GSM1426401 ,
GSM1426402 ,
GSM1426403 ,
GSM1426404 ,
GSM1426405 ,
GSM1426406 ,
GSM1426407 ,
GSM1426408 ,
GSM1426409 ,
GSM1426410 ,
GSM1426411 ,
GSM1426412 ,
GSM1426413 ,
GSM1426414 ,
GSM1426415 ,
GSM1426416 ,
GSM1426417 ,
GSM1426418 ,
GSM1426419 ,
GSM1426420 ,
GSM1426421 ,
GSM1426422 ,
GSM1426423 ,
GSM1426424 ,
GSM1426425 ,
GSM1426426 ,
GSM1426427 ,
GSM1426428 ,
GSM1426429 ,
GSM1426430 ,
GSM1426431 ,
GSM1426432 ,
GSM1426433 ,
GSM1426434 ,
GSM1426435 ,
GSM1426436 ,
GSM1426437 ,
GSM1426438 ,
GSM1426439 ,
GSM1426440 ,
GSM1426441 ,
GSM1426442 ,
GSM1426443 ,
GSM1426444 ,
GSM1426445 ,
GSM1426446 ,
GSM1426447 ,
GSM1426448 ,
GSM1426449 ,
GSM1426450 ,
GSM1426451 ,
GSM1426452 ,
GSM1426453 ,
GSM1426454 ,
GSM1426455 ,
GSM1426456 ,
GSM1426457 ,
GSM1426458 ,
GSM1426459 ,
GSM1426460 ,
GSM1426461 ,
GSM1426462 ,
GSM1426463 ,
GSM1426464 ,
GSM1426465 ,
GSM1426466 ,
GSM1426467 ,
GSM1426468 ,
GSM1426469 ,
GSM1426470 ,
GSM1426471 ,
GSM1426472 ,
GSM1426473 ,
GSM1426474 ,
GSM1426475 ,
GSM1426476 ,
GSM1426477 ,
GSM1426478 ,
GSM1426479 ,
GSM1426480 ,
GSM1426481 ,
GSM1426482 ,
GSM1426483 ,
GSM1426484 ,
GSM1426485 ,
GSM1426486 ,
GSM1426487 ,
GSM1426488 ,
GSM1426489 ,
GSM1426490 ,
GSM1426491 ,
GSM1426492 ,
GSM1426493 ,
GSM1426494 ,
GSM1426495 ,
GSM1426496 ,
GSM1426497 ,
GSM1426498 ,
GSM1426499 ,
GSM1426500 ,
GSM1426501 ,
GSM1426502 ,
GSM1426503 ,
GSM1426504 ,
GSM1426505 ,
GSM1426506 ,
GSM1426507 ,
GSM1426508 ,
GSM1426509 ,
GSM1426510 ,
GSM1426511 ,
GSM1426512 ,
GSM1426513 ,
GSM1426514 ,
GSM1426515 ,
GSM1426516 ,
GSM1426517 ,
GSM1426518 ,
GSM1426519 ,
GSM1426520 ,
GSM1426521 ,
GSM1426522 ,
GSM1426523 ,
GSM1426524 ,
GSM1426525 ,
GSM1426526 ,
GSM1426527 ,
GSM1426528 ,
GSM1426529 ,
GSM1426530 ,
GSM1426531 ,
GSM1426532 ,
GSM1426533 ,
GSM1426534 ,
GSM1426535 ,
GSM1426536 ,
GSM1426537 ,
GSM1426538 ,
GSM1426539 ,
GSM1426540 ,
GSM1426541 ,
GSM1426542 ,
GSM1426543 ,
GSM1426544 ,
GSM1426545 ,
GSM1426546 ,
GSM1426547 ,
GSM1426548 ,
GSM1426549 ,
GSM1426550 ,
GSM1426551 ,
GSM1426552 ,
GSM1426553 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here Series (9)
GSE36341 mRNA degradation in Mycobacterium tuberculosis under aerobic conditions
GSE36343 mRNA degradation in Mycobacterium tuberculosis during cold and hypoxic stress
GSE36344 mRNA degradation in Mycobacterium tuberculosis with DosR ectopically induced
GSE36345 mRNA degradation in Mycobacterium tuberculosis
GSE40917 Expression Analysis of WR99210-treated Mycobacterium tuberculosis H37Rv
GSE43466 Reconstruction of the Mycobacterium tuberculosis Regulatory Network and Deconstruction of the Hypoxic Response
GSE55979 Folate Pathway Disruption Leads to Critical Depletion of Methionine Derivatives in Mycobacterium tuberculosis
GSE59086 Mapping and manipulating the M. tuberculosis transcriptome using a transcription factor overexpression-derived regulatory network
GSE68856 Towards understanding the biological function of the unusual chaperonin GroEL1 of Mycobacterium tuberculosis
Data table header descriptions ID POSITION END SEQ_ID REAL_G STRAND ORF PRODUCT N_EXON_BASES
Data table ID POSITION END SEQ_ID REAL_G STRAND ORF PRODUCT N_EXON_BASES Rv0001
1
1524
MT_H37RV_V2
TRUE
+
Rv0001 chromosomal replication initiator protein dnaA
1524
Rv0002
2052
3260
MT_H37RV_V2
TRUE
+
Rv0002 DNA polymerase III beta chain dnaN
1209
Rv0003
3280
4437
MT_H37RV_V2
TRUE
+
Rv0003 DNA replication and repair protein recF
1158
Rv0004
4434
4997
MT_H37RV_V2
TRUE
+
Rv0004 conserved hypothetical protein
564
Rv0005
5123
7267
MT_H37RV_V2
TRUE
+
Rv0005 DNA gyrase subunit B gyrB
2145
Rv0006
7302
9818
MT_H37RV_V2
TRUE
+
Rv0006 DNA gyrase subunit A gyrA
2517
Rv0007
9914
10828
MT_H37RV_V2
TRUE
+
Rv0007 conserved membrane protein
915
Rv0008c
11874
12311
MT_H37RV_V2
TRUE
-
Rv0008c membrane protein
438
Rv0009
12468
13016
MT_H37RV_V2
TRUE
+
Rv0009 iron-regulated peptidyl-prolyl-cis-trans-isomerase A ppiA
549
Rv0010c
13133
13558
MT_H37RV_V2
TRUE
-
Rv0010c conserved membrane protein
426
Rv0011c
13714
13995
MT_H37RV_V2
TRUE
-
Rv0011c conserved membrane protein
282
Rv0012
14089
14877
MT_H37RV_V2
TRUE
+
Rv0012 conserved membrane protein
789
Rv0013
14914
15612
MT_H37RV_V2
TRUE
+
Rv0013 anthranilate synthase component II trpG
699
Rv0014c
15590
17470
MT_H37RV_V2
TRUE
-
Rv0014c transmembrane serine/threonine-protein kinase B pknB
1881
Rv0015c
17467
18762
MT_H37RV_V2
TRUE
-
Rv0015c transmembrane serine/threonine-protein kinase A pknA
1296
Rv0016c
18759
20234
MT_H37RV_V2
TRUE
-
Rv0016c penicillin-binding protein pbpA
1476
Rv0017c
20231
21640
MT_H37RV_V2
TRUE
-
Rv0017c cell division protein rodA
1410
Rv0018c
21637
23181
MT_H37RV_V2
TRUE
-
Rv0018c serine/threonine phosphatase ppp
1545
Rv0019c
23270
23737
MT_H37RV_V2
TRUE
-
Rv0019c conserved hypothetical protein
468
Rv0020c
23861
25444
MT_H37RV_V2
TRUE
-
Rv0020c conserved hypothetical protein
1584
4049 331 Kbytes .Supplementary file Size Download File type/resource GPL14824_110405_NGver2_GeneInf.ndf.gz
7.2 Mb
(ftp) (http) NDF
GPL14824_110405_NGver2_exp_HX12.ncd.gz
312 b
(ftp) (http) NCD
GPL14824_MTb.GeneMap.Attributes.txt.gz
123.9 Kb
(ftp) (http) TXT
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