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Platform GPL14824 Query DataSets for GPL14824
Status Public on Nov 08, 2011
Title SBRI_MTuberculosis_12x130K_ver2.0
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Mycobacterium tuberculosis H37Rv
Manufacturer Nimblegen
Manufacture protocol High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
Catalog number 110405_Mtuber_TR_exp_HX12
Support glass
Coating unknown
 
Description NimbleGen design name 110405_Mtuber_TR_exp_HX12. Custom designed in house tiled array of 107,936 unique probes covering all 4000 ORFs, sense and antisense, and all intergenic regions.
 
Contributor(s) Rustad TR, Morrison R
Submission date Nov 01, 2011
Last update date Feb 19, 2013
Contact name Tige Rustad
E-mail(s) tige.rustad@sbri.org
Phone 206-256-7207
Organization name Seattle Biomedical Research Institute
Department Pathobiology
Lab Sherman
Street address 307 Westlake Avenue N, Suite 500
City Seattle
State/province WA
ZIP/Postal code 98109
Country USA
 
Samples (1093) GSM889308, GSM889309, GSM889310, GSM889311, GSM889312, GSM889313 
Series (9)
GSE36341 mRNA degradation in Mycobacterium tuberculosis under aerobic conditions
GSE36343 mRNA degradation in Mycobacterium tuberculosis during cold and hypoxic stress
GSE36344 mRNA degradation in Mycobacterium tuberculosis with DosR ectopically induced

Data table header descriptions
ID
POSITION
END
SEQ_ID
REAL_G
STRAND
ORF
PRODUCT
N_EXON_BASES

Data table
ID POSITION END SEQ_ID REAL_G STRAND ORF PRODUCT N_EXON_BASES
Rv0001 1 1524 MT_H37RV_V2 TRUE + Rv0001 chromosomal replication initiator protein dnaA 1524
Rv0002 2052 3260 MT_H37RV_V2 TRUE + Rv0002 DNA polymerase III beta chain dnaN 1209
Rv0003 3280 4437 MT_H37RV_V2 TRUE + Rv0003 DNA replication and repair protein recF 1158
Rv0004 4434 4997 MT_H37RV_V2 TRUE + Rv0004 conserved hypothetical protein 564
Rv0005 5123 7267 MT_H37RV_V2 TRUE + Rv0005 DNA gyrase subunit B gyrB 2145
Rv0006 7302 9818 MT_H37RV_V2 TRUE + Rv0006 DNA gyrase subunit A gyrA 2517
Rv0007 9914 10828 MT_H37RV_V2 TRUE + Rv0007 conserved membrane protein 915
Rv0008c 11874 12311 MT_H37RV_V2 TRUE - Rv0008c membrane protein 438
Rv0009 12468 13016 MT_H37RV_V2 TRUE + Rv0009 iron-regulated peptidyl-prolyl-cis-trans-isomerase A ppiA 549
Rv0010c 13133 13558 MT_H37RV_V2 TRUE - Rv0010c conserved membrane protein 426
Rv0011c 13714 13995 MT_H37RV_V2 TRUE - Rv0011c conserved membrane protein 282
Rv0012 14089 14877 MT_H37RV_V2 TRUE + Rv0012 conserved membrane protein 789
Rv0013 14914 15612 MT_H37RV_V2 TRUE + Rv0013 anthranilate synthase component II trpG 699
Rv0014c 15590 17470 MT_H37RV_V2 TRUE - Rv0014c transmembrane serine/threonine-protein kinase B pknB 1881
Rv0015c 17467 18762 MT_H37RV_V2 TRUE - Rv0015c transmembrane serine/threonine-protein kinase A pknA 1296
Rv0016c 18759 20234 MT_H37RV_V2 TRUE - Rv0016c penicillin-binding protein pbpA 1476
Rv0017c 20231 21640 MT_H37RV_V2 TRUE - Rv0017c cell division protein rodA 1410
Rv0018c 21637 23181 MT_H37RV_V2 TRUE - Rv0018c serine/threonine phosphatase ppp 1545
Rv0019c 23270 23737 MT_H37RV_V2 TRUE - Rv0019c conserved hypothetical protein 468
Rv0020c 23861 25444 MT_H37RV_V2 TRUE - Rv0020c conserved hypothetical protein 1584

Total number of rows: 4049

Table truncated, full table size 331 Kbytes.




Download family Format
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Supplementary file Size Download File type/resource
GPL14824_110405_NGver2_GeneInf.ndf.gz 7.2 Mb (ftp)(http) NDF
GPL14824_110405_NGver2_exp_HX12.ncd.gz 312 b (ftp)(http) NCD
GPL14824_MTb.GeneMap.Attributes.txt.gz 123.9 Kb (ftp)(http) TXT

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