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Platform GPL14381 Query DataSets for GPL14381
Status Public on Feb 22, 2012
Title Custom E. coli K12 8 x 15K format
Technology type spotted oligonucleotide
Distribution custom-commercial
Organism Escherichia coli
Manufacturer Oxford Gene Technology
Manufacture protocol The oligonucleotide microarray is composed of about 15000 of 60 mer oligonucleotides. Each probe matches to one MseI fragment of the E. Coli chromosome with a size between 60 and 1000 bp. The annotation contains the lenght of this MseI fragments and the number of GATC methylation sites on this fragment.
 
 
Submission date Sep 07, 2011
Last update date Feb 22, 2012
Contact name Torsten Waldminghaus
E-mail(s) torsten.waldminghaus@synmikro.uni-marburg.de
Organization name Synmikro
Department Philipps-Universität Marburg
Street address Hans-Meerwein-Straße
City Marburg
ZIP/Postal code 35032
Country Germany
 
Samples (4) GSM791725, GSM791726, GSM791727, GSM791728
Series (1)
GSE28280 SeqA Chip-chip analysis of E. coli MG1655 and derivatives

Data table header descriptions
ID
GENOME_ACC
region
SEQUENCE probe sequence
strand
length length of MseI chromosomal fragment that the probe matches to
GATC GATC methylation site on MseI fragment

Data table
ID GENOME_ACC region SEQUENCE strand length GATC
8351 NC_000913.2 thrA CATTATCTCGGTGGTAGGTGATGGTATGCGCACCTTGCGTGGGATCTCGGCGAAATTCTT + 702 3
5410 NC_000913.2 thrA AAACTATTGATTCTCGCTCGTGAAACGGGACGTGAACTGGAGCTGGCGGATATTGAAATT + 517 2
2792 NC_000913.2 thrA-IG-thrB TGCCGGTGTCTTTGCTGATCTGCTACGTACCCTCTCATGGAAGTTAGGAGTCTGACATGG + 343 3
3639 NC_000913.2 thrB CCTGGAAAAGAATATGCCGATCGGTTCGGGCTTAGGCTCCAGTGCCTGTTCGGTGGTCGC + 348 1
1131 NC_000913.2 thrB TTCATTACGACAACGTGGCACCGTGTTTTCTCGGTGGTATGCAGTTGATGATCGAAGAAA + 186 1
748 NC_000913.2 thrC GTTTGCCTTCCCGGCTCCGGTCGCCAATGTTGAAAGCGATGTCGGTTGTCTGGAATTGTT + 711 2
9020 NC_000913.2 thrC CACAAATGCTGACCCATATTGCGGGTGATAAGCCAGTGACCATTCTGACCGCGACCTCCG + 305 0
609 NC_000913.2 thrC CCGGTGAAACGTTTTATTGCTGCGACCAACGTGAACGATACCGTGCCACGTTTCCTGCAC + 386 0
12055 NC_000913.2 thrC CGTAGCTTATCGTGCGCTGCGTGATCAGTTGAATCCAGGCGAATATGGCTTGTTCCTCGG + 118 1
5913 NC_000913.2 yaaX GCCACCATAAGAAAGCTCCTCATGATCATCACGGCGGTCATGGTCCAGGCAAACATCACC + 724 3
2590 NC_000913.2 yaaX-IG-yaaA TTAATTCTGCAATATATTGAATCTGCATGCTTTTGTAGGCAGGATAAGGCGTTCACGCCG + 81 0
4607 NC_000913.2 yaaA TTTTCAATAATGAAACGACTCATCAGACCGCGTGCTTTCTTAGCGTAGAAGCTGATGATC + 96 1
13289 NC_000913.2 yaaA GTTCTTCTCATCGAGGAACACCGGCTTGATAATCTCGGCATTCAATTTCTTCGGCTTCAC + 75 0
11412 NC_000913.2 yaaA CGCCTCGTTCAGCTTGTTGGTGATGATATCTCCCCAGAATTGATACAGATCTTTCCCTCG + 136 2
10140 NC_000913.2 yaaA CGGAAAGCATTCGCAAATGCTGTTGGGCAAAATCGAAATCGTCTTCGCTGAAGGTTTCGG + 119 0
14474 NC_000913.2 yaaJ GTCGAACCCATTCCCGCCTCATTGGAAAACATACTGCGCTGAAAACCGTTAGTAATCGCC + 982 5
5956 NC_000913.2 yaaJ CTTGAACTCCGCTGAAAATTATGCCATAGGCGATGAGCAAAAAGACGGCGAACAGAACGC + 594 0
5246 NC_000913.2 yaaJ GATGTAGCGAAACTGCACAAATCCGGTGCGAAAAGTGAACCAACAACCTGCGCCGAAGAG + 117 1
3160 NC_000913.2 yaaJ-IG-talB CATGCATATCCCTCTTATTGCCGGTCGCGATGACTTTCCTGTGTAAACGTTACCAATTGT + 83 0
3469 NC_000913.2 yaaJ-IG-talB GTCTTGTCGGCGGTTGCGCTGACGTTGCGTCGTGATATCATCAGGGCAGACCGGTTACAT + 203 0

Total number of rows: 14554

Table truncated, full table size 1315 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL14381.txt.gz 513.5 Kb (ftp)(http) TXT

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